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Merge pull request #20 from erin-price/master
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dsarov authored Nov 3, 2020
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Expand Up @@ -20,7 +20,7 @@ ARDaP was written by Derek Sarovich ([@DerekSarovich](https://twitter.com/DerekS
- [Parameters](#parameters)
- [Inclusion of Assembled Genomes](#Inclusion-of-Assembled-Genomes)
- [Custom Database Creation](#Database-Creation)
- [ARDaP Reports](#ARDaP-Reports)
- [AMR Report Summary](#ARDaP-Report)
- [Troubleshooting](#Troubleshooting)
- [Citation](#citation)

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**- Description of the GWAS component of ARDaP for AMR determinant prediction across well-curated genomic datasets with associated AMR phenotyping data**


## ARDaP Reports
## AMR Report Summary

ARDaP summarises the AMR findings, if any, for each (meta)genome or (meta)transcriptome of interest in an easy-to-interpret report (Figure 4). This report also correlates AMR genotype with AMR phenotype. Finally, ARDaP flags quality issues, incorrect species, and natural genetic variation that does not confer AMR.

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