From 487116f2303392fdc9fc9b57ffb3ff7240019f95 Mon Sep 17 00:00:00 2001
From: Carlo Russo <crl.russo@hotmail.com>
Date: Fri, 10 Nov 2023 11:13:25 +0100
Subject: [PATCH] Added github action unit test

---
 .github/workflow/ci_env.yml | 46 +++++++++++++++++++++++++++++++++++++
 requirements.txt            |  6 ++---
 2 files changed, 49 insertions(+), 3 deletions(-)
 create mode 100644 .github/workflow/ci_env.yml

diff --git a/.github/workflow/ci_env.yml b/.github/workflow/ci_env.yml
new file mode 100644
index 0000000..96e116a
--- /dev/null
+++ b/.github/workflow/ci_env.yml
@@ -0,0 +1,46 @@
+name: Lisflood OS Unit Tests
+
+on: [push]
+
+jobs:
+  tests:
+    runs-on: ubuntu-20.04
+    strategy:
+      max-parallel: 5
+
+    steps:
+    - name: Checkout github repo
+      uses: actions/checkout@v3
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: 3.7
+    - name: Conda info
+      shell: bash -el {0}
+      run: conda info
+    - name: Install python and gcc
+      shell: bash -el {0}
+      run: |
+        conda install -c conda-forge python=3.7
+        conda install -c conda-forge gcc=12.1.0
+    - name: Install gdal eccodes pcraster hdf5
+      shell: bash -el {0}
+      run: |
+        conda install -c conda-forge gdal==3.5.1 eccodes pcraster
+        conda install -c conda-forge hdf5
+    - name: Install dependencies
+      shell: bash -el {0}
+      run: |
+        pip install -r requirements.txt
+        pip install .
+    - name: Check installation
+      shell: bash -el {0}
+      run: |
+        gdal-config --version
+        python -c "from osgeo import gdal; print(gdal.__version__)"
+        conda list
+    - name: Test with pytest
+      shell: bash -el {0}
+      run: |
+        pip install pytest pytest-cov
+        pytest
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
index 12d00c9..f1dc6e0 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -12,13 +12,13 @@ lisflood-utilities>=0.12.19
 llvmlite>=0.37.0
 lxml>=4.6.5
 more-itertools>=7.2.0
-netCDF4>=1.5.3
+netCDF4>=1.5.3,<=1.6.4
 nine>=1.0.0
 numba>=0.54.0
-numexpr>=2.7.0
+numexpr==2.8.1
 numpy>=1.21.0
 packaging>=19.2
-pandas>=1
+pandas>=1,<2
 pathlib2>=2.3.5
 pkginfo>=1.5.0.1
 pluggy>=0.13.0