diff --git a/src/edam_mod.ttl b/src/edam_mod.ttl
new file mode 100644
index 0000000..6b30c64
--- /dev/null
+++ b/src/edam_mod.ttl
@@ -0,0 +1,39897 @@
+@prefix : .
+@prefix dc: .
+@prefix doap: .
+@prefix edam: .
+@prefix foaf: .
+@prefix oboInOwl: .
+@prefix oboOther: .
+@prefix owl: .
+@prefix rdf: .
+@prefix rdfs: .
+@prefix xsd: .
+@prefix xsd: .
+
+ a owl:Ontology ;
+ :next_id "4010" ;
+ oboOther:date "18.06.2020 09:15 UTC" ;
+ oboOther:idspace "EDAM http://edamontology.org/ \"EDAM relations and concept properties\"",
+ "EDAM_data http://edamontology.org/data_ \"EDAM types of data\"",
+ "EDAM_format http://edamontology.org/format_ \"EDAM data formats\"",
+ "EDAM_operation http://edamontology.org/operation_ \"EDAM operations\"",
+ "EDAM_topic http://edamontology.org/topic_ \"EDAM topics\"" ;
+ oboOther:remark "EDAM editors: Jon Ison, Matúš Kalaš, Hervé Ménager, and Veit Schwämmle. Contributors: see http://edamontologydocs.readthedocs.io/en/latest/contributors.html. License: see http://edamontologydocs.readthedocs.io/en/latest/license.html.",
+ "EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM is a simple ontology - essentially a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use by curators, software developers and end-users. EDAM is suitable for large-scale semantic annotations and categorisation of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries." ;
+ dc:contributor "Veit Schwämmle" ;
+ dc:creator "Hervé Ménager",
+ "Jon Ison",
+ "Matúš Kalaš" ;
+ dc:format "application/rdf+xml" ;
+ dc:title "Bioinformatics operations, data types, formats, identifiers and topics" ;
+ doap:Version "1.25" ;
+ oboInOwl:hasSubset "concept_properties \"EDAM concept properties\"",
+ "data \"EDAM types of data\"",
+ "edam \"EDAM\"",
+ "formats \"EDAM data formats\"",
+ "identifiers \"EDAM types of identifiers\"",
+ "operations \"EDAM operations\"",
+ "relations \"EDAM relations\"",
+ "topics \"EDAM topics\"" ;
+ oboInOwl:savedBy "Jon Ison, Matúš Kalaš, Hervé Ménager" ;
+ rdfs:isDefinedBy :EDAM.owl ;
+ foaf:page :page .
+
+:citation a owl:AnnotationProperty ;
+ rdfs:label "Citation" ;
+ :created_in "1.13" ;
+ oboOther:is_metadata_tag "true" ;
+ oboInOwl:hasBroadSynonym "Publication reference" ;
+ oboInOwl:hasDefinition "'Citation' concept property ('citation' metadata tag) contains a dereferenceable URI, preferrably including a DOI, pointing to a citeable publication of the given data format." ;
+ oboInOwl:hasRelatedSynonym "Publication" ;
+ oboInOwl:inSubset "concept_properties" .
+
+:created_in a owl:AnnotationProperty ;
+ rdfs:label "Created in" ;
+ oboOther:is_metadata_tag "true" ;
+ oboInOwl:hasDefinition "Version in which a concept was created." ;
+ oboInOwl:inSubset "concept_properties" .
+
+
+:data_0007 a owl:Class ;
+ rdfs:label "Tool" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A bioinformatics package or tool, e.g. a standalone application or web service." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0958 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+
+:data_0005 a owl:Class ;
+ rdfs:label "Resource type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "A type of computational resource used in bioinformatics." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0581 a owl:Class ;
+ rdfs:label "Database" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A digital data archive typically based around a relational model but sometimes using an object-oriented, tree or graph-based model." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0957 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0583 a owl:Class ;
+ rdfs:label "Directory metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "A directory on my disk from which files are read." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0831 a owl:Class ;
+ rdfs:label "MeSH vocabulary" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0582 ;
+ oboInOwl:hasDefinition "Controlled vocabulary from National Library of Medicine. The MeSH thesaurus is used to index articles in biomedical journals for the Medline/PubMED databases." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0832 a owl:Class ;
+ rdfs:label "HGNC vocabulary" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0582 ;
+ oboInOwl:hasDefinition "Controlled vocabulary for gene names (symbols) from HUGO Gene Nomenclature Committee." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0835 a owl:Class ;
+ rdfs:label "UMLS vocabulary" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0582 ;
+ oboInOwl:hasDefinition "Compendium of controlled vocabularies for the biomedical domain (Unified Medical Language System)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0843 a owl:Class ;
+ rdfs:label "Database entry" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "An entry (retrievable via URL) from a biological database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0844 a owl:Class ;
+ rdfs:label "Molecular mass" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Mass of a molecule." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2050 .
+
+:data_0845 a owl:Class ;
+ rdfs:label "Molecular charge" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_formal_charge" ;
+ oboInOwl:hasDefinition "Net charge of a molecule." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2050 .
+
+:data_0851 a owl:Class ;
+ rdfs:label "Sequence mask character" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "A character used to replace (mask) other characters in a molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0852 a owl:Class ;
+ rdfs:label "Sequence mask type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of sequence masking to perform." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Sequence masking is where specific characters or positions in a molecular sequence are masked (replaced) with an another (mask character). The mask type indicates what is masked, for example regions that are not of interest or which are information-poor including acidic protein regions, basic protein regions, proline-rich regions, low compositional complexity regions, short-periodicity internal repeats, simple repeats and low complexity regions. Masked sequences are used in database search to eliminate statistically significant but biologically uninteresting hits." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0853 a owl:Class ;
+ rdfs:label "DNA sense specification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.20" ;
+ :oldParent :data_2534 ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "The strand of a DNA sequence (forward or reverse)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The forward or 'top' strand might specify a sequence is to be used as given, the reverse or 'bottom' strand specifying the reverse complement of the sequence is to be used." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0854 a owl:Class ;
+ rdfs:label "Sequence length specification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "A specification of sequence length(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0855 a owl:Class ;
+ rdfs:label "Sequence metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2955 ;
+ oboInOwl:hasDefinition "Basic or general information concerning molecular sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is used for such things as a report including the sequence identifier, type and length." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0856 a owl:Class ;
+ rdfs:label "Sequence feature source" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "How the annotation of a sequence feature (for example in EMBL or Swiss-Prot) was derived." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This might be the name and version of a software tool, the name of a database, or 'curated' to indicate a manual annotation (made by a human)." ;
+ rdfs:subClassOf :data_2914 .
+
+:data_0859 a owl:Class ;
+ rdfs:label "Sequence signature model" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0950 ;
+ oboInOwl:hasDefinition "Data files used by motif or profile methods." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0861 a owl:Class ;
+ rdfs:label "Sequence alignment (words)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0863 ;
+ oboInOwl:hasDefinition "Alignment of exact matches between subsequences (words) within two or more molecular sequences." ;
+ oboInOwl:hasExactSynonym "Sequence word alignment" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0864 a owl:Class ;
+ rdfs:label "Sequence alignment parameter" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Some simple value controlling a sequence alignment (or similar 'match') operation." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0866 a owl:Class ;
+ rdfs:label "Sequence alignment metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "Report of general information on a sequence alignment, typically include a description, sequence identifiers and alignment score." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0868 a owl:Class ;
+ rdfs:label "Profile-profile alignment" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "\"Sequence-profile alignment\" and \"Profile-profile alignment\" are synonymous with \"Sequence signature matches\" which was already stated as including matches (alignment) and other data." ;
+ :oldParent :data_1916 ;
+ oboInOwl:hasDefinition "A profile-profile alignment (each profile typically representing a sequence alignment)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0858 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated true .
+
+:data_0869 a owl:Class ;
+ rdfs:label "Sequence-profile alignment" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "\"Sequence-profile alignment\" and \"Profile-profile alignment\" are synonymous with \"Sequence signature matches\" which was already stated as including matches (alignment) and other data." ;
+ :obsolete_since "1.24" ;
+ :oldParent :data_1916 ;
+ oboInOwl:hasDefinition "Alignment of one or more molecular sequence(s) to one or more sequence profile(s) (each profile typically representing a sequence alignment)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0858 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated true .
+
+:data_0875 a owl:Class ;
+ rdfs:label "Protein topology" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Predicted or actual protein topology represented as a string of protein secondary structure elements." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:comment "The location and size of the secondary structure elements and intervening loop regions is usually indicated." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0876 a owl:Class ;
+ rdfs:label "Protein features report (secondary structure)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Secondary structure (predicted or real) of a protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0877 a owl:Class ;
+ rdfs:label "Protein features report (super-secondary)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Super-secondary structure of protein sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:comment "Super-secondary structures include leucine zippers, coiled coils, Helix-Turn-Helix etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0879 a owl:Class ;
+ rdfs:label "Secondary structure alignment metadata (protein)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "An informative report on protein secondary structure alignment-derived data or metadata." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0882 a owl:Class ;
+ rdfs:label "Secondary structure alignment metadata (RNA)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "An informative report of RNA secondary structure alignment-derived data or metadata." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0884 a owl:Class ;
+ rdfs:label "Tertiary structure record" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0883 ;
+ oboInOwl:hasDefinition "An entry from a molecular tertiary (3D) structure database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0885 a owl:Class ;
+ rdfs:label "Structure database search results" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:consider :data_2080 ;
+ oboInOwl:hasDefinition "Results (hits) from searching a database of tertiary structure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0890 a owl:Class ;
+ rdfs:label "Structural (3D) profile alignment" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A 3D profile-3D profile alignment (each profile representing structures or a structure alignment)." ;
+ oboInOwl:hasExactSynonym "Structural profile alignment" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1916 .
+
+:data_0891 a owl:Class ;
+ rdfs:label "Sequence-3D profile alignment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0893 ;
+ oboInOwl:hasDefinition "An alignment of a sequence to a 3D profile (representing structures or a structure alignment)." ;
+ oboInOwl:hasExactSynonym "Sequence-structural profile alignment" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0894 a owl:Class ;
+ rdfs:label "Amino acid annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report about a specific amino acid." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0895 a owl:Class ;
+ rdfs:label "Peptide annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report about a specific peptide." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0899 a owl:Class ;
+ rdfs:label "Protein structural motifs and surfaces" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "3D structural motifs in a protein." ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0900 a owl:Class ;
+ rdfs:label "Protein domain classification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Data concerning the classification of the sequences and/or structures of protein structural domain(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0901 a owl:Class ;
+ rdfs:label "Protein features report (domains)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "structural domains or 3D folds in a protein or polypeptide chain." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0902 a owl:Class ;
+ rdfs:label "Protein architecture report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_1537 ;
+ oboInOwl:hasDefinition "An informative report on architecture (spatial arrangement of secondary structure) of a protein structure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0903 a owl:Class ;
+ rdfs:label "Protein folding report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report on an analysis or model of protein folding properties, folding pathways, residues or sites that are key to protein folding, nucleation or stabilisation centers etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1537 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0904 a owl:Class ;
+ rdfs:label "Protein features (mutation)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "Data on the effect of (typically point) mutation on protein folding, stability, structure and function." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0905 a owl:Class ;
+ rdfs:label "Protein interaction raw data" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Protein-protein interaction data from for example yeast two-hybrid analysis, protein microarrays, immunoaffinity chromatography followed by mass spectrometry, phage display etc." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf :data_3108 .
+
+:data_0909 a owl:Class ;
+ rdfs:label "Vmax" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The maximum initial velocity or rate of a reaction. It is the limiting velocity as substrate concentrations get very large." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2024 .
+
+:data_0910 a owl:Class ;
+ rdfs:label "Km" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Km is the concentration (usually in Molar units) of substrate that leads to half-maximal velocity of an enzyme-catalysed reaction." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2024 .
+
+:data_0911 a owl:Class ;
+ rdfs:label "Nucleotide base annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report about a specific nucleotide base." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0917 a owl:Class ;
+ rdfs:label "Gene classification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "A report on the classification of nucleic acid / gene sequences according to the functional classification of their gene products." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0918 a owl:Class ;
+ rdfs:label "DNA variation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0923 a owl:Class ;
+ rdfs:label "PCR experiment report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "PCR experiments, e.g. quantitative real-time PCR." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0926 a owl:Class ;
+ rdfs:label "RH scores" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Radiation hybrid scores (RH) scores for one or more markers." ;
+ oboInOwl:hasExactSynonym "Radiation Hybrid (RH) scores" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Radiation Hybrid (RH) scores are used in Radiation Hybrid mapping." ;
+ rdfs:subClassOf :data_3108 .
+
+:data_0931 a owl:Class ;
+ rdfs:label "Microarray experiment report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "microarray experiments including conditions, protocol, sample:data relationships etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0932 a owl:Class ;
+ rdfs:label "Oligonucleotide probe data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2717 ;
+ oboInOwl:hasDefinition "Data on oligonucleotide probes (typically for use with DNA microarrays)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0933 a owl:Class ;
+ rdfs:label "SAGE experimental data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2535 ;
+ oboInOwl:hasDefinition "Output from a serial analysis of gene expression (SAGE) experiment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0934 a owl:Class ;
+ rdfs:label "MPSS experimental data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2535 ;
+ oboInOwl:hasDefinition "Massively parallel signature sequencing (MPSS) data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0935 a owl:Class ;
+ rdfs:label "SBS experimental data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2535 ;
+ oboInOwl:hasDefinition "Sequencing by synthesis (SBS) data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0936 a owl:Class ;
+ rdfs:label "Sequence tag profile (with gene assignment)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.14" ;
+ oboInOwl:hasDefinition "Tag to gene assignments (tag mapping) of SAGE, MPSS and SBS data. Typically this is the sequencing-based expression profile annotated with gene identifiers." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2535 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0937 a owl:Class ;
+ rdfs:label "Electron density map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasBroadSynonym "Protein X-ray crystallographic data" ;
+ oboInOwl:hasDefinition "X-ray crystallography data." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2537 .
+
+:data_0938 a owl:Class ;
+ rdfs:label "Raw NMR data" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Nuclear magnetic resonance (NMR) raw data, typically for a protein." ;
+ oboInOwl:hasNarrowSynonym "Protein NMR data" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2537 .
+
+:data_0939 a owl:Class ;
+ rdfs:label "CD spectra" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Protein secondary structure from protein coordinate or circular dichroism (CD) spectroscopic data." ;
+ oboInOwl:hasExactSynonym "CD spectrum",
+ "Protein circular dichroism (CD) spectroscopic data" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2537 .
+
+:data_0940 a owl:Class ;
+ rdfs:label "Volume map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Volume map data from electron microscopy." ;
+ oboInOwl:hasExactSynonym "3D volume map",
+ "EM volume map",
+ "Electron microscopy volume map" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_1317 ],
+ :data_3108 .
+
+:data_0941 a owl:Class ;
+ rdfs:label "Electron microscopy model" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.19" ;
+ :oldParent :data_0883 ;
+ oboInOwl:hasDefinition "Annotation on a structural 3D model (volume map) from electron microscopy." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_3806 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0942 a owl:Class ;
+ rdfs:label "2D PAGE image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Two-dimensional gel electrophoresis image" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_0121 ],
+ :data_3424 .
+
+:data_0945 a owl:Class ;
+ rdfs:label "Peptide identification" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Protein or peptide identifications with evidence supporting the identifications, for example from comparing a peptide mass fingerprint (from mass spectrometry) to a sequence database, or the set of typical spectra one obtains when running a protein through a mass spectrometer." ;
+ oboInOwl:hasExactSynonym "'Protein identification'",
+ "Peptide spectrum match" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_0121 ],
+ :data_0897,
+ :data_2979 .
+
+:data_0946 a owl:Class ;
+ rdfs:label "Pathway or network annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2984 ;
+ oboInOwl:hasDefinition "An informative report about a specific biological pathway or network, typically including a map (diagram) of the pathway." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0947 a owl:Class ;
+ rdfs:label "Biological pathway map" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2600 ;
+ oboInOwl:hasDefinition "A map (typically a diagram) of a biological pathway." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0948 a owl:Class ;
+ rdfs:label "Data resource definition" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1883 ;
+ oboInOwl:hasDefinition "A definition of a data resource serving one or more types of data, including metadata and links to the resource or data proper." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0952 a owl:Class ;
+ rdfs:label "EMBOSS database resource definition" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "Resource definition for an EMBOSS database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0953 a owl:Class ;
+ rdfs:label "Version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "Information on a version of software or data, for example name, version number and release date." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Development status / maturity may be part of the version information, for example in case of tools, standards, or some data records." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0956 a owl:Class ;
+ rdfs:label "Data index report" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A human-readable collection of information concerning an analysis of an index of biological data." ;
+ oboInOwl:hasExactSynonym "Database index annotation" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_3489 ],
+ :data_2048 .
+
+:data_0959 a owl:Class ;
+ rdfs:label "Job metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "Textual metadata on a submitted or completed job." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0960 a owl:Class ;
+ rdfs:label "User metadata" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Textual metadata on a software author or end-user, for example a person or other software." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2337 .
+
+:data_0964 a owl:Class ;
+ rdfs:label "Scent annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report about a specific scent." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0974 a owl:Class ;
+ rdfs:label "Entity identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "An identifier of a biological entity or phenomenon." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0975 a owl:Class ;
+ rdfs:label "Data resource identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "An identifier of a data resource." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0978 a owl:Class ;
+ rdfs:label "Discrete entity identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Name or other identifier of a discrete entity (any biological thing with a distinct, discrete physical existence)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0979 a owl:Class ;
+ rdfs:label "Entity feature identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Name or other identifier of an entity feature (a physical part or region of a discrete biological entity, or a feature that can be mapped to such a thing)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0980 a owl:Class ;
+ rdfs:label "Entity collection identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Name or other identifier of a collection of discrete biological entities." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0981 a owl:Class ;
+ rdfs:label "Phenomenon identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Name or other identifier of a physical, observable biological occurrence or event." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0985 a owl:Class ;
+ rdfs:label "Molecule type" ;
+ :created_in "beta12orEarlier" ;
+ :example "Protein|DNA|RNA" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type a molecule." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "For example, 'Protein', 'DNA', 'RNA' etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0986 a owl:Class ;
+ rdfs:label "Chemical identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1086 ;
+ oboInOwl:hasDefinition "Unique identifier of a chemical compound." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0992 a owl:Class ;
+ rdfs:label "Ligand identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1086 ;
+ oboInOwl:hasDefinition "Code word for a ligand, for example from a PDB file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_0997 a owl:Class ;
+ rdfs:label "Chemical name (ChEBI)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique name from Chemical Entities of Biological Interest (ChEBI) of a chemical compound." ;
+ oboInOwl:hasExactSynonym "ChEBI chemical name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This is the recommended chemical name for use for example in database annotation." ;
+ rdfs:subClassOf :data_0990 .
+
+:data_0998 a owl:Class ;
+ rdfs:label "Chemical name (IUPAC)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "IUPAC recommended name of a chemical compound." ;
+ oboInOwl:hasExactSynonym "IUPAC chemical name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990 .
+
+:data_0999 a owl:Class ;
+ rdfs:label "Chemical name (INN)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "International Non-proprietary Name (INN or 'generic name') of a chemical compound, assigned by the World Health Organisation (WHO)." ;
+ oboInOwl:hasExactSynonym "INN chemical name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990 .
+
+:data_1000 a owl:Class ;
+ rdfs:label "Chemical name (brand)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Brand name of a chemical compound." ;
+ oboInOwl:hasExactSynonym "Brand chemical name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990 .
+
+:data_1001 a owl:Class ;
+ rdfs:label "Chemical name (synonymous)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Synonymous name of a chemical compound." ;
+ oboInOwl:hasExactSynonym "Synonymous chemical name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990 .
+
+:data_1003 a owl:Class ;
+ rdfs:label "Chemical registry number (Beilstein)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Beilstein registry number of a chemical compound." ;
+ oboInOwl:hasExactSynonym "Beilstein chemical registry number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0991,
+ :data_2091 .
+
+:data_1004 a owl:Class ;
+ rdfs:label "Chemical registry number (Gmelin)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Gmelin registry number of a chemical compound." ;
+ oboInOwl:hasExactSynonym "Gmelin chemical registry number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0991,
+ :data_2091 .
+
+:data_1005 a owl:Class ;
+ rdfs:label "HET group name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "3-letter code word for a ligand (HET group) from a PDB file, for example ATP." ;
+ oboInOwl:hasExactSynonym "Component identifier code",
+ "Short ligand name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990 .
+
+:data_1007 a owl:Class ;
+ rdfs:label "Nucleotide code" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "String of one or more ASCII characters representing a nucleotide." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990,
+ :data_0995 .
+
+:data_1008 a owl:Class ;
+ rdfs:label "Polypeptide chain ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_PDB_strand_id",
+ "WHATIF: chain" ;
+ oboInOwl:hasDefinition "Identifier of a polypeptide chain from a protein." ;
+ oboInOwl:hasExactSynonym "Chain identifier",
+ "PDB chain identifier",
+ "PDB strand id",
+ "Polypeptide chain identifier",
+ "Protein chain identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This is typically a character (for the chain) appended to a PDB identifier, e.g. 1cukA" ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1467 ],
+ :data_0988 .
+
+:data_1011 a owl:Class ;
+ rdfs:label "EC number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+\\.-\\.-\\.-|[0-9]+\\.[0-9]+\\.-\\.-|[0-9]+\\.[0-9]+\\.[0-9]+\\.-|[0-9]+\\.[0-9]+\\.[0-9]+\\.[0-9]+" ;
+ oboInOwl:hasDbXref "Moby:Annotated_EC_Number",
+ "Moby:EC_Number" ;
+ oboInOwl:hasDefinition "An Enzyme Commission (EC) number of an enzyme." ;
+ oboInOwl:hasExactSynonym "EC",
+ "EC code",
+ "Enzyme Commission number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2321 .
+
+:data_1013 a owl:Class ;
+ rdfs:label "Restriction enzyme name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a restriction enzyme." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1012 .
+
+:data_1014 a owl:Class ;
+ rdfs:label "Sequence position specification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1016 ;
+ oboInOwl:hasDefinition "A specification (partial or complete) of one or more positions or regions of a molecular sequence or map." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1018 a owl:Class ;
+ rdfs:label "Nucleic acid feature identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1015 ;
+ oboInOwl:hasDefinition "Name or other identifier of an nucleic acid feature." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1019 a owl:Class ;
+ rdfs:label "Protein feature identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1015 ;
+ oboInOwl:hasDefinition "Name or other identifier of a protein feature." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1020 a owl:Class ;
+ rdfs:label "Sequence feature key" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The type of a sequence feature, typically a term or accession from the Sequence Ontology, for example an EMBL or Swiss-Prot sequence feature key." ;
+ oboInOwl:hasExactSynonym "Sequence feature method",
+ "Sequence feature type" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A feature key indicates the biological nature of the feature or information about changes to or versions of the sequence." ;
+ rdfs:subClassOf :data_2914 .
+
+:data_1021 a owl:Class ;
+ rdfs:label "Sequence feature qualifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Typically one of the EMBL or Swiss-Prot feature qualifiers." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Feature qualifiers hold information about a feature beyond that provided by the feature key and location." ;
+ rdfs:subClassOf :data_2914 .
+
+:data_1023 a owl:Class ;
+ rdfs:label "EMBOSS Uniform Feature Object" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a sequence feature-containing entity adhering to the standard feature naming scheme used by all EMBOSS applications." ;
+ oboInOwl:hasExactSynonym "UFO" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2099,
+ :data_3034 .
+
+:data_1024 a owl:Class ;
+ rdfs:label "Codon name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "String of one or more ASCII characters representing a codon." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1028 a owl:Class ;
+ rdfs:label "Gene identifier (NCBI RefSeq)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1027 ;
+ oboInOwl:hasDefinition "An NCBI RefSeq unique identifier of a gene." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1029 a owl:Class ;
+ rdfs:label "Gene identifier (NCBI UniGene)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1104 ;
+ oboInOwl:hasDefinition "An NCBI UniGene unique identifier of a gene." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1030 a owl:Class ;
+ rdfs:label "Gene identifier (Entrez)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:consider :data_1027 ;
+ oboInOwl:hasDefinition "An Entrez unique identifier of a gene." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1031 a owl:Class ;
+ rdfs:label "Gene ID (CGD)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a gene or feature from the CGD database." ;
+ oboInOwl:hasExactSynonym "CGD ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1032 a owl:Class ;
+ rdfs:label "Gene ID (DictyBase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a gene from DictyBase." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1033 a owl:Class ;
+ rdfs:label "Ensembl gene ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a gene (or other feature) from the Ensembl database." ;
+ oboInOwl:hasExactSynonym "Gene ID (Ensembl)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295,
+ :data_2610 .
+
+:data_1034 a owl:Class ;
+ rdfs:label "Gene ID (SGD)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "S[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the SGD database." ;
+ oboInOwl:hasExactSynonym "SGD identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295,
+ :data_2632 .
+
+:data_1036 a owl:Class ;
+ rdfs:label "TIGR identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the TIGR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109,
+ :data_2295 .
+
+:data_1040 a owl:Class ;
+ rdfs:label "CATH domain ID" ;
+ :created_in "beta12orEarlier" ;
+ :example "1nr3A00" ;
+ oboInOwl:hasDefinition "Identifier of a protein domain from CATH." ;
+ oboInOwl:hasExactSynonym "CATH domain identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2700 .
+
+:data_1041 a owl:Class ;
+ rdfs:label "SCOP concise classification string (sccs)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A SCOP concise classification string (sccs) is a compact representation of a SCOP domain classification." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "An scss includes the class (alphabetical), fold, superfamily and family (all numerical) to which a given domain belongs." ;
+ rdfs:subClassOf :data_1039 .
+
+:data_1042 a owl:Class ;
+ rdfs:label "SCOP sunid" ;
+ :created_in "beta12orEarlier" ;
+ :example "33229" ;
+ oboInOwl:hasDefinition "Unique identifier (number) of an entry in the SCOP hierarchy, for example 33229." ;
+ oboInOwl:hasExactSynonym "SCOP unique identifier",
+ "sunid" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A sunid uniquely identifies an entry in the SCOP hierarchy, including leaves (the SCOP domains) and higher level nodes including entries corresponding to the protein level." ;
+ rdfs:subClassOf :data_1039 .
+
+:data_1044 a owl:Class ;
+ rdfs:label "Kingdom name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a biological kingdom (Bacteria, Archaea, or Eukaryotes)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1868 .
+
+:data_1045 a owl:Class ;
+ rdfs:label "Species name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a species (typically a taxonomic group) of organism." ;
+ oboInOwl:hasExactSynonym "Organism species" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1868 .
+
+:data_1049 a owl:Class ;
+ rdfs:label "Directory name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a directory." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_1051 a owl:Class ;
+ rdfs:label "Ontology name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of an ontology of biological or bioinformatics concepts and relations." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0582 ],
+ :data_2099,
+ :data_2338 .
+
+:data_1052 a owl:Class ;
+ rdfs:label "URL" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby:Link",
+ "Moby:URL" ;
+ oboInOwl:hasDefinition "A Uniform Resource Locator (URL)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1047 .
+
+:data_1055 a owl:Class ;
+ rdfs:label "LSID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A Life Science Identifier (LSID) - a unique identifier of some data." ;
+ oboInOwl:hasExactSynonym "Life Science Identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "LSIDs provide a standard way to locate and describe data. An LSID is represented as a Uniform Resource Name (URN) with the following format: URN:LSID:::[:]" ;
+ rdfs:subClassOf :data_1053 .
+
+:data_1057 a owl:Class ;
+ rdfs:label "Sequence database name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1056 ;
+ oboInOwl:hasDefinition "The name of a molecular sequence database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1058 a owl:Class ;
+ rdfs:label "Enumerated file name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a file (of any type) with restricted possible values." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1050 .
+
+:data_1059 a owl:Class ;
+ rdfs:label "File name extension" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The extension of a file name." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A file extension is the characters appearing after the final '.' in the file name." ;
+ rdfs:subClassOf :data_1050 .
+
+:data_1060 a owl:Class ;
+ rdfs:label "File base name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The base name of a file." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A file base name is the file name stripped of its directory specification and extension." ;
+ rdfs:subClassOf :data_1050 .
+
+:data_1061 a owl:Class ;
+ rdfs:label "QSAR descriptor name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a QSAR descriptor." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0847 ],
+ :data_2099,
+ :data_2110 .
+
+:data_1062 a owl:Class ;
+ rdfs:label "Database entry identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "An identifier of an entry from a database where the same type of identifier is used for objects (data) of different semantic type." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This concept is required for completeness. It should never have child concepts." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1065 a owl:Class ;
+ rdfs:label "Sequence signature identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1114,
+ :data_1115 ;
+ oboInOwl:hasDefinition "Identifier of a sequence signature (motif or profile) for example from a database of sequence patterns." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1066 a owl:Class ;
+ rdfs:label "Sequence alignment ID" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Identifier of a molecular sequence alignment, for example a record from an alignment database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0863 ],
+ :data_0976,
+ :data_2091 .
+
+:data_1067 a owl:Class ;
+ rdfs:label "Phylogenetic distance matrix identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0976 ;
+ oboInOwl:hasDefinition "Identifier of a phylogenetic distance matrix." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1071 a owl:Class ;
+ rdfs:label "Structural (3D) profile ID" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Identifier or name of a structural (3D) profile or template (representing a structure or structure alignment)." ;
+ oboInOwl:hasExactSynonym "Structural profile identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0889 ],
+ :data_0976 .
+
+:data_1076 a owl:Class ;
+ rdfs:label "Codon usage table name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique name of a codon usage table." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1598 ],
+ [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1597 ],
+ :data_2099,
+ :data_2111 .
+
+:data_1091 a owl:Class ;
+ rdfs:label "WormBase name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of an object from the WormBase database, usually a human-readable name." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2113 .
+
+:data_1092 a owl:Class ;
+ rdfs:label "WormBase class" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Class of an object from the WormBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A WormBase class describes the type of object such as 'sequence' or 'protein'." ;
+ rdfs:subClassOf :data_2113 .
+
+:data_1094 a owl:Class ;
+ rdfs:label "Sequence type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing a type of molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Sequence type might reflect the molecule (protein, nucleic acid etc) or the sequence itself (gapped, ambiguous etc)." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1095 a owl:Class ;
+ rdfs:label "EMBOSS Uniform Sequence Address" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a sequence-based entity adhering to the standard sequence naming scheme used by all EMBOSS applications." ;
+ oboInOwl:hasExactSynonym "EMBOSS USA" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1063,
+ :data_2099 .
+
+:data_1099 a owl:Class ;
+ rdfs:label "UniProt accession (extended)" ;
+ :created_in "beta12orEarlier" ;
+ :example "Q7M1G0|P43353-2|P01012.107" ;
+ :obsolete_since "1.0" ;
+ :regex "[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]|[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9].[0-9]+|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9].[0-9]+|[A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9]-[0-9]+|[OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]-[0-9]+" ;
+ oboInOwl:consider :data_3021 ;
+ oboInOwl:hasDefinition "Accession number of a UniProt (protein sequence) database entry. May contain version or isoform number." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1100 a owl:Class ;
+ rdfs:label "PIR identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of PIR sequence database entry." ;
+ oboInOwl:hasExactSynonym "PIR ID",
+ "PIR accession number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1096,
+ :data_2091 .
+
+:data_1101 a owl:Class ;
+ rdfs:label "TREMBL accession" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.2" ;
+ oboInOwl:hasDefinition "Identifier of a TREMBL sequence database entry." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_3021 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1102 a owl:Class ;
+ rdfs:label "Gramene primary identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Primary identifier of a Gramene database entry." ;
+ oboInOwl:hasExactSynonym "Gramene primary ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2915 .
+
+:data_1105 a owl:Class ;
+ rdfs:label "dbEST accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a dbEST database entry." ;
+ oboInOwl:hasExactSynonym "dbEST ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2292,
+ :data_2728 .
+
+:data_1106 a owl:Class ;
+ rdfs:label "dbSNP ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a dbSNP database entry." ;
+ oboInOwl:hasExactSynonym "dbSNP identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2294 .
+
+:data_1110 a owl:Class ;
+ rdfs:label "EMBOSS sequence type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "The EMBOSS type of a molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "See the EMBOSS documentation (http://emboss.sourceforge.net/) for a definition of what this includes." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1111 a owl:Class ;
+ rdfs:label "EMBOSS listfile" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2872 ;
+ oboInOwl:hasDefinition "List of EMBOSS Uniform Sequence Addresses (EMBOSS listfile)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1113 a owl:Class ;
+ rdfs:label "Sequence cluster ID (COG)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the COG database." ;
+ oboInOwl:hasExactSynonym "COG ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1112,
+ :data_2091 .
+
+:data_1116 a owl:Class ;
+ rdfs:label "ELM ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the ELMdb database of protein functional sites." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1114 .
+
+:data_1117 a owl:Class ;
+ rdfs:label "Prosite accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PS[0-9]{5}" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the Prosite database." ;
+ oboInOwl:hasExactSynonym "Prosite ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1114 .
+
+:data_1118 a owl:Class ;
+ rdfs:label "HMMER hidden Markov model ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier or name of a HMMER hidden Markov model." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1364 ],
+ :data_1115,
+ :data_2091 .
+
+:data_1119 a owl:Class ;
+ rdfs:label "JASPAR profile ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier or name of a profile from the JASPAR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1115,
+ :data_2091 .
+
+:data_1120 a owl:Class ;
+ rdfs:label "Sequence alignment type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of a sequence alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Possible values include for example the EMBOSS alignment types, BLAST alignment types and so on." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1121 a owl:Class ;
+ rdfs:label "BLAST sequence alignment type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "The type of a BLAST sequence alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1122 a owl:Class ;
+ rdfs:label "Phylogenetic tree type" ;
+ :created_in "beta12orEarlier" ;
+ :example "nj|upgmp" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of a phylogenetic tree." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "For example 'nj', 'upgmp' etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1123 a owl:Class ;
+ rdfs:label "TreeBASE study accession number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the TreeBASE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1068,
+ :data_2091 .
+
+:data_1124 a owl:Class ;
+ rdfs:label "TreeFam accession number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the TreeFam database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1068,
+ :data_2091 .
+
+:data_1125 a owl:Class ;
+ rdfs:label "Comparison matrix type" ;
+ :created_in "beta12orEarlier" ;
+ :example "blosum|pam|gonnet|id" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of a comparison matrix." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "For example 'blosum', 'pam', 'gonnet', 'id' etc. Comparison matrix type may be required where a series of matrices of a certain type are used." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1126 a owl:Class ;
+ rdfs:label "Comparison matrix name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique name or identifier of a comparison matrix." ;
+ oboInOwl:hasExactSynonym "Substitution matrix name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "See for example http://www.ebi.ac.uk/Tools/webservices/help/matrix." ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0874 ],
+ :data_1069,
+ :data_2099 .
+
+:data_1127 a owl:Class ;
+ rdfs:label "PDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9][a-zA-Z_0-9]{3}" ;
+ oboInOwl:hasDefinition "An identifier of an entry from the PDB database." ;
+ oboInOwl:hasExactSynonym "PDB identifier",
+ "PDBID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A PDB identification code which consists of 4 characters, the first of which is a digit in the range 0 - 9; the remaining 3 are alpha-numeric, and letters are upper case only. (source: https://cdn.rcsb.org/wwpdb/docs/documentation/file-format/PDB_format_1996.pdf)" ;
+ rdfs:subClassOf :data_1070,
+ :data_2091 .
+
+:data_1128 a owl:Class ;
+ rdfs:label "AAindex ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the AAindex database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1073,
+ :data_2091 .
+
+:data_1129 a owl:Class ;
+ rdfs:label "BIND accession number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the BIND database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_1130 a owl:Class ;
+ rdfs:label "IntAct accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "EBI\\-[0-9]+" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the IntAct database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_1132 a owl:Class ;
+ rdfs:label "InterPro entry name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of an InterPro entry, usually indicating the type of protein matches for that entry." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1355 ],
+ :data_1131 .
+
+:data_1134 a owl:Class ;
+ rdfs:label "InterPro secondary accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Secondary accession number of an InterPro entry." ;
+ oboInOwl:hasExactSynonym "InterPro secondary accession number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1355 ],
+ :data_1133 .
+
+:data_1135 a owl:Class ;
+ rdfs:label "Gene3D ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the Gene3D database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1136 a owl:Class ;
+ rdfs:label "PIRSF ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PIRSF[0-9]{6}" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the PIRSF database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1137 a owl:Class ;
+ rdfs:label "PRINTS code" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PR[0-9]{5}" ;
+ oboInOwl:hasDefinition "The unique identifier of an entry in the PRINTS database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1138 a owl:Class ;
+ rdfs:label "Pfam accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PF[0-9]{5}" ;
+ oboInOwl:hasDefinition "Accession number of a Pfam entry." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1139 a owl:Class ;
+ rdfs:label "SMART accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "SM[0-9]{5}" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the SMART database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1140 a owl:Class ;
+ rdfs:label "Superfamily hidden Markov model number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier (number) of a hidden Markov model from the Superfamily database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1141 a owl:Class ;
+ rdfs:label "TIGRFam ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry (family) from the TIGRFam database." ;
+ oboInOwl:hasExactSynonym "TIGRFam accession number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1142 a owl:Class ;
+ rdfs:label "ProDom accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PD[0-9]+" ;
+ oboInOwl:hasDefinition "A ProDom domain family accession number." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "ProDom is a protein domain family database." ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_1143 a owl:Class ;
+ rdfs:label "TRANSFAC accession number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the TRANSFAC database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2911 .
+
+:data_1144 a owl:Class ;
+ rdfs:label "ArrayExpress accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[AEP]-[a-zA-Z_0-9]{4}-[0-9]+" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the ArrayExpress database." ;
+ oboInOwl:hasExactSynonym "ArrayExpress experiment ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1078 .
+
+:data_1145 a owl:Class ;
+ rdfs:label "PRIDE experiment accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "PRIDE experiment accession number." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1078 .
+
+:data_1146 a owl:Class ;
+ rdfs:label "EMDB ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the EMDB electron microscopy database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1079,
+ :data_2091 .
+
+:data_1147 a owl:Class ;
+ rdfs:label "GEO accession number" ;
+ :created_in "beta12orEarlier" ;
+ :regex "o^GDS[0-9]+" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the GEO database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1080,
+ :data_2091 .
+
+:data_1148 a owl:Class ;
+ rdfs:label "GermOnline ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the GermOnline database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1080,
+ :data_2091 .
+
+:data_1149 a owl:Class ;
+ rdfs:label "EMAGE ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the EMAGE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1080,
+ :data_2091 .
+
+:data_1151 a owl:Class ;
+ rdfs:label "HGVbase ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the HGVbase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1081,
+ :data_2091 .
+
+:data_1152 a owl:Class ;
+ rdfs:label "HIVDB identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Identifier of an entry from the HIVDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1153 a owl:Class ;
+ rdfs:label "OMIM ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[*#+%^]?[0-9]{6}" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the OMIM database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1081,
+ :data_2091 .
+
+:data_1155 a owl:Class ;
+ rdfs:label "Pathway ID (reactome)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "REACT_[0-9]+(\\.[0-9]+)?" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the Reactome database." ;
+ oboInOwl:hasExactSynonym "Reactome ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_1156 a owl:Class ;
+ rdfs:label "Pathway ID (aMAZE)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1082 ;
+ oboInOwl:hasDefinition "Identifier of an entry from the aMAZE database." ;
+ oboInOwl:hasExactSynonym "aMAZE ID" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1157 a owl:Class ;
+ rdfs:label "Pathway ID (BioCyc)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an pathway from the BioCyc biological pathways database." ;
+ oboInOwl:hasExactSynonym "BioCyc pathway ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2104,
+ :data_2365 .
+
+:data_1158 a owl:Class ;
+ rdfs:label "Pathway ID (INOH)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the INOH database." ;
+ oboInOwl:hasExactSynonym "INOH identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_1159 a owl:Class ;
+ rdfs:label "Pathway ID (PATIKA)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the PATIKA database." ;
+ oboInOwl:hasExactSynonym "PATIKA ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_1160 a owl:Class ;
+ rdfs:label "Pathway ID (CPDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the CPDB (ConsensusPathDB) biological pathways database, which is an identifier from an external database integrated into CPDB." ;
+ oboInOwl:hasExactSynonym "CPDB ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This concept refers to identifiers used by the databases collated in CPDB; CPDB identifiers are not independently defined." ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_1161 a owl:Class ;
+ rdfs:label "Pathway ID (Panther)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PTHR[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a biological pathway from the Panther Pathways database." ;
+ oboInOwl:hasExactSynonym "Panther Pathways ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_1162 a owl:Class ;
+ rdfs:label "MIRIAM identifier" ;
+ :created_in "beta12orEarlier" ;
+ :example "MIR:00100005" ;
+ :regex "MIR:[0-9]{8}" ;
+ oboInOwl:hasDefinition "Unique identifier of a MIRIAM data resource." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This is the identifier used internally by MIRIAM for a data type." ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0957 ],
+ :data_2091,
+ :data_2902 .
+
+:data_1164 a owl:Class ;
+ rdfs:label "MIRIAM URI" ;
+ :created_in "beta12orEarlier" ;
+ :example "urn:miriam:pubmed:16333295|urn:miriam:obo.go:GO%3A0045202" ;
+ oboInOwl:hasDefinition "The URI (URL or URN) of a data entity from the MIRIAM database." ;
+ oboInOwl:hasExactSynonym "identifiers.org synonym" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A MIRIAM URI consists of the URI of the MIRIAM data type (PubMed, UniProt etc) followed by the identifier of an element of that data type, for example PMID for a publication or an accession number for a GO term." ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0957 ],
+ :data_1047,
+ :data_2091,
+ :data_2902 .
+
+:data_1166 a owl:Class ;
+ rdfs:label "MIRIAM data type synonymous name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A synonymous name of a data type from the MIRIAM database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A synonymous name for a MIRIAM data type taken from a controlled vocabulary." ;
+ rdfs:subClassOf :data_1163 .
+
+:data_1167 a owl:Class ;
+ rdfs:label "Taverna workflow ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a Taverna workflow." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1083,
+ :data_2091 .
+
+:data_1170 a owl:Class ;
+ rdfs:label "Biological model name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a biological (mathematical) model." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1085,
+ :data_2099 .
+
+:data_1171 a owl:Class ;
+ rdfs:label "BioModel ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "(BIOMD|MODEL)[0-9]{10}" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the BioModel database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2891 .
+
+:data_1172 a owl:Class ;
+ rdfs:label "PubChem CID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Chemical structure specified in PubChem Compound Identification (CID), a non-zero integer identifier for a unique chemical structure." ;
+ oboInOwl:hasExactSynonym "PubChem compound accession identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2639,
+ :data_2894 .
+
+:data_1173 a owl:Class ;
+ rdfs:label "ChemSpider ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the ChemSpider database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_1174 a owl:Class ;
+ rdfs:label "ChEBI ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "CHEBI:[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the ChEBI database." ;
+ oboInOwl:hasExactSynonym "ChEBI IDs",
+ "ChEBI identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_1175 a owl:Class ;
+ rdfs:label "BioPax concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the BioPax ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1177 a owl:Class ;
+ rdfs:label "MeSH concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the MeSH vocabulary." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1178 a owl:Class ;
+ rdfs:label "HGNC concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the HGNC controlled vocabulary." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1179 a owl:Class ;
+ rdfs:label "NCBI taxonomy ID" ;
+ :created_in "beta12orEarlier" ;
+ :example "9662|3483|182682" ;
+ :regex "[1-9][0-9]{0,8}" ;
+ oboInOwl:hasDefinition "A stable unique identifier for each taxon (for a species, a family, an order, or any other group in the NCBI taxonomy database." ;
+ oboInOwl:hasExactSynonym "NCBI tax ID",
+ "NCBI taxonomy identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091,
+ :data_2908 .
+
+:data_1180 a owl:Class ;
+ rdfs:label "Plant Ontology concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the Plant Ontology (PO)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1181 a owl:Class ;
+ rdfs:label "UMLS concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the UMLS vocabulary." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1182 a owl:Class ;
+ rdfs:label "FMA concept ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "FMA:[0-9]+" ;
+ oboInOwl:hasDefinition "An identifier of a concept from Foundational Model of Anatomy." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Classifies anatomical entities according to their shared characteristics (genus) and distinguishing characteristics (differentia). Specifies the part-whole and spatial relationships of the entities, morphological transformation of the entities during prenatal development and the postnatal life cycle and principles, rules and definitions according to which classes and relationships in the other three components of FMA are represented." ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1183 a owl:Class ;
+ rdfs:label "EMAP concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the EMAP mouse ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1184 a owl:Class ;
+ rdfs:label "ChEBI concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the ChEBI ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1185 a owl:Class ;
+ rdfs:label "MGED concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the MGED ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1186 a owl:Class ;
+ rdfs:label "myGrid concept ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the myGrid ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "The ontology is provided as two components, the service ontology and the domain ontology. The domain ontology acts provides concepts for core bioinformatics data types and their relations. The service ontology describes the physical and operational features of web services." ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_1187 a owl:Class ;
+ rdfs:label "PubMed ID" ;
+ :created_in "beta12orEarlier" ;
+ :example "4963447" ;
+ :regex "[1-9][0-9]{0,8}" ;
+ oboInOwl:hasDefinition "PubMed unique identifier of an article." ;
+ oboInOwl:hasExactSynonym "PMID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1088,
+ :data_2091 .
+
+:data_1188 a owl:Class ;
+ rdfs:label "DOI" ;
+ :created_in "beta12orEarlier" ;
+ :regex "(doi\\:)?[0-9]{2}\\.[0-9]{4}/.*" ;
+ oboInOwl:hasDefinition "Digital Object Identifier (DOI) of a published article." ;
+ oboInOwl:hasExactSynonym "Digital Object Identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1088,
+ :data_2091 .
+
+:data_1189 a owl:Class ;
+ rdfs:label "Medline UI" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Medline UI (unique identifier) of an article." ;
+ oboInOwl:hasExactSynonym "Medline unique identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "The use of Medline UI has been replaced by the PubMed unique identifier." ;
+ rdfs:subClassOf :data_1088,
+ :data_2091 .
+
+:data_1191 a owl:Class ;
+ rdfs:label "Tool name (signature)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The unique name of a signature (sequence classifier) method." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Signature methods from http://www.ebi.ac.uk/Tools/InterProScan/help.html#results include BlastProDom, FPrintScan, HMMPIR, HMMPfam, HMMSmart, HMMTigr, ProfileScan, ScanRegExp, SuperFamily and HAMAP." ;
+ rdfs:subClassOf :data_1190 .
+
+:data_1192 a owl:Class ;
+ rdfs:label "Tool name (BLAST)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a BLAST tool." ;
+ oboInOwl:hasExactSynonym "BLAST name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This include 'blastn', 'blastp', 'blastx', 'tblastn' and 'tblastx'." ;
+ rdfs:subClassOf :data_1190 .
+
+:data_1193 a owl:Class ;
+ rdfs:label "Tool name (FASTA)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a FASTA tool." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This includes 'fasta3', 'fastx3', 'fasty3', 'fastf3', 'fasts3' and 'ssearch'." ;
+ rdfs:subClassOf :data_1190 .
+
+:data_1194 a owl:Class ;
+ rdfs:label "Tool name (EMBOSS)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of an EMBOSS application." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1190 .
+
+:data_1195 a owl:Class ;
+ rdfs:label "Tool name (EMBASSY package)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of an EMBASSY package." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1190 .
+
+:data_1201 a owl:Class ;
+ rdfs:label "QSAR descriptor (constitutional)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A QSAR constitutional descriptor." ;
+ oboInOwl:hasExactSynonym "QSAR constitutional descriptor" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0847 .
+
+:data_1202 a owl:Class ;
+ rdfs:label "QSAR descriptor (electronic)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A QSAR electronic descriptor." ;
+ oboInOwl:hasExactSynonym "QSAR electronic descriptor" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0847 .
+
+:data_1203 a owl:Class ;
+ rdfs:label "QSAR descriptor (geometrical)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A QSAR geometrical descriptor." ;
+ oboInOwl:hasExactSynonym "QSAR geometrical descriptor" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0847 .
+
+:data_1204 a owl:Class ;
+ rdfs:label "QSAR descriptor (topological)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A QSAR topological descriptor." ;
+ oboInOwl:hasExactSynonym "QSAR topological descriptor" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0847 .
+
+:data_1205 a owl:Class ;
+ rdfs:label "QSAR descriptor (molecular)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A QSAR molecular descriptor." ;
+ oboInOwl:hasExactSynonym "QSAR molecular descriptor" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0847 .
+
+:data_1236 a owl:Class ;
+ rdfs:label "Psiblast checkpoint file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "A file of intermediate results from a PSIBLAST search that is used for priming the search in the next PSIBLAST iteration." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A Psiblast checkpoint file uses ASN.1 Binary Format and usually has the extension '.asn'." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1237 a owl:Class ;
+ rdfs:label "HMMER synthetic sequences set" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "Sequences generated by HMMER package in FASTA-style format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1241 a owl:Class ;
+ rdfs:label "vectorstrip cloning vector definition file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "File of sequence vectors used by EMBOSS vectorstrip application, or any file in same format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1242 a owl:Class ;
+ rdfs:label "Primer3 internal oligo mishybridizing library" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "A library of nucleotide sequences to avoid during hybridisation events. Hybridisation of the internal oligo to sequences in this library is avoided, rather than priming from them. The file is in a restricted FASTA format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1243 a owl:Class ;
+ rdfs:label "Primer3 mispriming library file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "A nucleotide sequence library of sequences to avoid during amplification (for example repetitive sequences, or possibly the sequences of genes in a gene family that should not be amplified. The file must is in a restricted FASTA format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1244 a owl:Class ;
+ rdfs:label "primersearch primer pairs sequence record" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "File of one or more pairs of primer sequences, as used by EMBOSS primersearch application." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1245 a owl:Class ;
+ rdfs:label "Sequence cluster (protein)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A cluster of protein sequences." ;
+ oboInOwl:hasExactSynonym "Protein sequence cluster" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "The sequences are typically related, for example a family of sequences." ;
+ rdfs:subClassOf :data_1233,
+ :data_1235 .
+
+:data_1250 a owl:Class ;
+ rdfs:label "Word size" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "Size of a sequence word." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Word size is used for example in word-based sequence database search methods." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1251 a owl:Class ;
+ rdfs:label "Window size" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "Size of a sequence window." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A window is a region of fixed size but not fixed position over a molecular sequence. It is typically moved (computationally) over a sequence during scoring." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1252 a owl:Class ;
+ rdfs:label "Sequence length range" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "Specification of range(s) of length of sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1253 a owl:Class ;
+ rdfs:label "Sequence information report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report on basic information about a molecular sequence such as name, accession number, type (nucleic or protein), length, description etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2955 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1256 a owl:Class ;
+ rdfs:label "Sequence features (comparative)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1255 ;
+ oboInOwl:hasDefinition "Comparative data on sequence features such as statistics, intersections (and data on intersections), differences etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1257 a owl:Class ;
+ rdfs:label "Sequence property (protein)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0897 ;
+ oboInOwl:hasDefinition "A report of general sequence properties derived from protein sequence data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1258 a owl:Class ;
+ rdfs:label "Sequence property (nucleic acid)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0912 ;
+ oboInOwl:hasDefinition "A report of general sequence properties derived from nucleotide sequence data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1262 a owl:Class ;
+ rdfs:label "Peptide molecular weight hits" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A report on peptide fragments of certain molecular weight(s) in one or more protein sequences." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1233 .
+
+:data_1264 a owl:Class ;
+ rdfs:label "Sequence composition table" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1261 ;
+ oboInOwl:hasDefinition "A table of character or word composition / frequency of a molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1265 a owl:Class ;
+ rdfs:label "Base frequencies table" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A table of base frequencies of a nucleotide sequence." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1261,
+ :data_2082 .
+
+:data_1267 a owl:Class ;
+ rdfs:label "Amino acid frequencies table" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A table of amino acid frequencies of a protein sequence." ;
+ oboInOwl:hasExactSynonym "Sequence composition (amino acid frequencies)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1261,
+ :data_2082 .
+
+:data_1269 a owl:Class ;
+ rdfs:label "DAS sequence feature annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1978 ;
+ oboInOwl:hasDefinition "Annotation of a molecular sequence in DAS format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1281 a owl:Class ;
+ rdfs:label "Sequence signature map" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image of a sequence with matches to signatures, motifs or profiles." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2969 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1284 a owl:Class ;
+ rdfs:label "DNA transduction map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A gene map showing distances between loci based on relative cotransduction frequencies." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1278 .
+
+:data_1285 a owl:Class ;
+ rdfs:label "Gene map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Sequence map of a single gene annotated with genetic features such as introns, exons, untranslated regions, polyA signals, promoters, enhancers and (possibly) mutations defining alleles of a gene." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1279 .
+
+:data_1286 a owl:Class ;
+ rdfs:label "Plasmid map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Sequence map of a plasmid (circular DNA)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1279 .
+
+:data_1288 a owl:Class ;
+ rdfs:label "Genome map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Sequence map of a whole genome." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1279 .
+
+:data_1290 a owl:Class ;
+ rdfs:label "InterPro compact match image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image showing matches between protein sequence(s) and InterPro Entries." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2969 ;
+ rdfs:comment "The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself. Each protein is represented as a scaled horizontal line with colored bars indicating the position of the matches." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1291 a owl:Class ;
+ rdfs:label "InterPro detailed match image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image showing detailed information on matches between protein sequence(s) and InterPro Entries." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2969 ;
+ rdfs:comment "The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1292 a owl:Class ;
+ rdfs:label "InterPro architecture image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image showing the architecture of InterPro domains in a protein sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2969 ;
+ rdfs:comment "The sequence(s) might be screened against InterPro, or be the sequences from the InterPro entry itself. Domain architecture is shown as a series of non-overlapping domains in the protein." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1293 a owl:Class ;
+ rdfs:label "SMART protein schematic" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2969 ;
+ oboInOwl:hasDefinition "SMART protein schematic in PNG format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1294 a owl:Class ;
+ rdfs:label "GlobPlot domain image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Images based on GlobPlot prediction of intrinsic disordered regions and globular domains in protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2969 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1298 a owl:Class ;
+ rdfs:label "Sequence motif matches" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0858 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1299 a owl:Class ;
+ rdfs:label "Sequence features (repeats)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1255 ;
+ oboInOwl:hasDefinition "Location of short repetitive subsequences (repeat sequences) in (typically nucleotide) sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The report might include derived data map such as classification, annotation, organisation, periodicity etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1300 a owl:Class ;
+ rdfs:label "Gene and transcript structure (report)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "A report on predicted or actual gene structure, regions which make an RNA product and features such as promoters, coding regions, splice sites etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1301 a owl:Class ;
+ rdfs:label "Mobile genetic elements" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "regions of a nucleic acid sequence containing mobile genetic elements." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1303 a owl:Class ;
+ rdfs:label "Nucleic acid features (quadruplexes)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3128 ;
+ oboInOwl:hasDefinition "A report on quadruplex-forming motifs in a nucleotide sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1306 a owl:Class ;
+ rdfs:label "Nucleosome exclusion sequences" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report on nucleosome formation potential or exclusion sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1309 a owl:Class ;
+ rdfs:label "Gene features (exonic splicing enhancer)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:hasDefinition "A report on exonic splicing enhancers (ESE) in an exon." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1310 a owl:Class ;
+ rdfs:label "Nucleic acid features (microRNA)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "A report on microRNA sequence (miRNA) or precursor, microRNA targets, miRNA binding sites in an RNA sequence etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1313 a owl:Class ;
+ rdfs:label "Coding region" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "protein-coding regions including coding sequences (CDS), exons, translation initiation sites and open reading frames." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1314 a owl:Class ;
+ rdfs:label "Gene features (SECIS element)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "A report on selenocysteine insertion sequence (SECIS) element in a DNA sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1315 a owl:Class ;
+ rdfs:label "Transcription factor binding sites" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "transcription factor binding sites (TFBS) in a DNA sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1321 a owl:Class ;
+ rdfs:label "Protein features (sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1277 ;
+ oboInOwl:hasDefinition "A report on predicted or known key residue positions (sites) in a protein sequence, such as binding or functional sites." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Use this concept for collections of specific sites which are not necessarily contiguous, rather than contiguous stretches of amino acids." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1322 a owl:Class ;
+ rdfs:label "Protein features report (signal peptides)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "signal peptides or signal peptide cleavage sites in protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1323 a owl:Class ;
+ rdfs:label "Protein features report (cleavage sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "cleavage sites (for a proteolytic enzyme or agent) in a protein sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1324 a owl:Class ;
+ rdfs:label "Protein features (post-translation modifications)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "post-translation modifications in a protein sequence, typically describing the specific sites involved." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1325 a owl:Class ;
+ rdfs:label "Protein features report (active sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "catalytic residues (active site) of an enzyme." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1326 a owl:Class ;
+ rdfs:label "Protein features report (binding sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "ligand-binding (non-catalytic) residues of a protein, such as sites that bind metal, prosthetic groups or lipids." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1327 a owl:Class ;
+ rdfs:label "Protein features (epitopes)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:hasDefinition "A report on antigenic determinant sites (epitopes) in proteins, from sequence and / or structural data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:comment "Epitope mapping is commonly done during vaccine design." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1328 a owl:Class ;
+ rdfs:label "Protein features report (nucleic acid binding sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "RNA and DNA-binding proteins and binding sites in protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1329 a owl:Class ;
+ rdfs:label "MHC Class I epitopes report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1277 ;
+ oboInOwl:hasDefinition "A report on epitopes that bind to MHC class I molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1330 a owl:Class ;
+ rdfs:label "MHC Class II epitopes report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1277 ;
+ oboInOwl:hasDefinition "A report on predicted epitopes that bind to MHC class II molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1331 a owl:Class ;
+ rdfs:label "Protein features (PEST sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:hasDefinition "A report or plot of PEST sites in a protein sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:comment "'PEST' motifs target proteins for proteolytic degradation and reduce the half-lives of proteins dramatically." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1338 a owl:Class ;
+ rdfs:label "Sequence database hits scores list" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0857 ;
+ oboInOwl:hasDefinition "Scores from a sequence database search (for example a BLAST search)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1339 a owl:Class ;
+ rdfs:label "Sequence database hits alignments list" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0857 ;
+ oboInOwl:hasDefinition "Alignments from a sequence database search (for example a BLAST search)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1340 a owl:Class ;
+ rdfs:label "Sequence database hits evaluation data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0857 ;
+ oboInOwl:hasDefinition "A report on the evaluation of the significance of sequence similarity scores from a sequence database search (for example a BLAST search)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1344 a owl:Class ;
+ rdfs:label "MEME motif alphabet" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0950 ;
+ oboInOwl:hasDefinition "Alphabet for the motifs (patterns) that MEME will search for." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1345 a owl:Class ;
+ rdfs:label "MEME background frequencies file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0950 ;
+ oboInOwl:hasDefinition "MEME background frequencies file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1346 a owl:Class ;
+ rdfs:label "MEME motifs directive file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0950 ;
+ oboInOwl:hasDefinition "File of directives for ordering and spacing of MEME motifs." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1348 a owl:Class ;
+ rdfs:label "HMM emission and transition counts" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_3354,
+ :data_3355 ;
+ oboInOwl:hasDefinition "Emission and transition counts of a hidden Markov model, generated once HMM has been determined, for example after residues/gaps have been assigned to match, delete and insert states." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1352 a owl:Class ;
+ rdfs:label "Regular expression" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Regular expression pattern." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0006 .
+
+:data_1358 a owl:Class ;
+ rdfs:label "Prosite nucleotide pattern" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1353 ;
+ oboInOwl:hasDefinition "A nucleotide regular expression pattern from the Prosite database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1359 a owl:Class ;
+ rdfs:label "Prosite protein pattern" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1353 ;
+ oboInOwl:hasDefinition "A protein regular expression pattern from the Prosite database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1361 a owl:Class ;
+ rdfs:label "Position frequency matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A profile (typically representing a sequence alignment) that is a simple matrix of nucleotide (or amino acid) counts per position." ;
+ oboInOwl:hasExactSynonym "PFM" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2854 .
+
+:data_1362 a owl:Class ;
+ rdfs:label "Position weight matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A profile (typically representing a sequence alignment) that is weighted matrix of nucleotide (or amino acid) counts per position." ;
+ oboInOwl:hasExactSynonym "PWM" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Contributions of individual sequences to the matrix might be uneven (weighted)." ;
+ rdfs:subClassOf :data_2854 .
+
+:data_1363 a owl:Class ;
+ rdfs:label "Information content matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A profile (typically representing a sequence alignment) derived from a matrix of nucleotide (or amino acid) counts per position that reflects information content at each position." ;
+ oboInOwl:hasExactSynonym "ICM" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2854 .
+
+:data_1365 a owl:Class ;
+ rdfs:label "Fingerprint" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "One or more fingerprints (sequence classifiers) as used in the PRINTS database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2854 .
+
+:data_1368 a owl:Class ;
+ rdfs:label "Domainatrix signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1354 ;
+ oboInOwl:hasDefinition "A protein signature of the type used in the EMBASSY Signature package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1371 a owl:Class ;
+ rdfs:label "HMMER NULL hidden Markov model" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1364 ;
+ oboInOwl:hasDefinition "NULL hidden Markov model representation used by the HMMER package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1372 a owl:Class ;
+ rdfs:label "Protein family signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1355 ;
+ oboInOwl:hasDefinition "A protein family signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Protein family signatures cover all domains in the matching proteins and span >80% of the protein length and with no adjacent protein domain signatures or protein region signatures." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1373 a owl:Class ;
+ rdfs:label "Protein domain signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1355 ;
+ oboInOwl:hasDefinition "A protein domain signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Protein domain signatures identify structural or functional domains or other units with defined boundaries." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1374 a owl:Class ;
+ rdfs:label "Protein region signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1355 ;
+ oboInOwl:hasDefinition "A protein region signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein region signature defines a region which cannot be described as a protein family or domain signature." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1375 a owl:Class ;
+ rdfs:label "Protein repeat signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1355 ;
+ oboInOwl:hasDefinition "A protein repeat signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein repeat signature is a repeated protein motif, that is not in single copy expected to independently fold into a globular domain." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1376 a owl:Class ;
+ rdfs:label "Protein site signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1355 ;
+ oboInOwl:hasDefinition "A protein site signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein site signature is a classifier for a specific site in a protein." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1377 a owl:Class ;
+ rdfs:label "Protein conserved site signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2071 ;
+ oboInOwl:hasDefinition "A protein conserved site signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein conserved site signature is any short sequence pattern that may contain one or more unique residues and is cannot be described as a active site, binding site or post-translational modification." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1378 a owl:Class ;
+ rdfs:label "Protein active site signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2071 ;
+ oboInOwl:hasDefinition "A protein active site signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein active site signature corresponds to an enzyme catalytic pocket. An active site typically includes non-contiguous residues, therefore multiple signatures may be required to describe an active site. ; residues involved in enzymatic reactions for which mutational data is typically available." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1379 a owl:Class ;
+ rdfs:label "Protein binding site signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2071 ;
+ oboInOwl:hasDefinition "A protein binding site signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein binding site signature corresponds to a site that reversibly binds chemical compounds, which are not themselves substrates of the enzymatic reaction. This includes enzyme cofactors and residues involved in electron transport or protein structure modification." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1380 a owl:Class ;
+ rdfs:label "Protein post-translational modification signature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2071 ;
+ oboInOwl:hasDefinition "A protein post-translational modification signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A protein post-translational modification signature corresponds to sites that undergo modification of the primary structure, typically to activate or de-activate a function. For example, methylation, sumoylation, glycosylation etc. The modification might be permanent or reversible." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1382 a owl:Class ;
+ rdfs:label "Sequence alignment (multiple)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0863 ;
+ oboInOwl:hasDefinition "Alignment of more than two molecular sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1386 a owl:Class ;
+ rdfs:label "Sequence alignment (nucleic acid pair)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:consider :data_1381,
+ :data_1383 ;
+ oboInOwl:hasDefinition "Alignment of exactly two nucleotide sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1387 a owl:Class ;
+ rdfs:label "Sequence alignment (protein pair)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:consider :data_1381,
+ :data_1384 ;
+ oboInOwl:hasDefinition "Alignment of exactly two protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1388 a owl:Class ;
+ rdfs:label "Hybrid sequence alignment (pair)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1385 ;
+ oboInOwl:hasDefinition "Alignment of exactly two molecular sequences of different types." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1389 a owl:Class ;
+ rdfs:label "Multiple nucleotide sequence alignment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0863 ;
+ oboInOwl:hasDefinition "Alignment of more than two nucleotide sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1390 a owl:Class ;
+ rdfs:label "Multiple protein sequence alignment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0863 ;
+ oboInOwl:hasDefinition "Alignment of more than two protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1395 a owl:Class ;
+ rdfs:label "Score end gaps control" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Whether end gaps are scored or not." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1396 a owl:Class ;
+ rdfs:label "Aligned sequence order" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Controls the order of sequences in an output sequence alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1400 a owl:Class ;
+ rdfs:label "Terminal gap penalty" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1410,
+ :data_1411 ;
+ oboInOwl:hasDefinition "A penalty for gaps at the termini of an alignment, either from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1401 a owl:Class ;
+ rdfs:label "Match reward score" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The score for a 'match' used in various sequence database search applications with simple scoring schemes." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1394 .
+
+:data_1402 a owl:Class ;
+ rdfs:label "Mismatch penalty score" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The score (penalty) for a 'mismatch' used in various alignment and sequence database search applications with simple scoring schemes." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1394 .
+
+:data_1403 a owl:Class ;
+ rdfs:label "Drop off score" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "This is the threshold drop in score at which extension of word alignment is halted." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1394 .
+
+:data_1404 a owl:Class ;
+ rdfs:label "Gap opening penalty (integer)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1397 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for opening a gap in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1405 a owl:Class ;
+ rdfs:label "Gap opening penalty (float)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1397 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for opening a gap in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1406 a owl:Class ;
+ rdfs:label "Gap extension penalty (integer)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1398 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for extending a gap in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1407 a owl:Class ;
+ rdfs:label "Gap extension penalty (float)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1398 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for extending a gap in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1408 a owl:Class ;
+ rdfs:label "Gap separation penalty (integer)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1399 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for gaps that are close together in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1409 a owl:Class ;
+ rdfs:label "Gap separation penalty (float)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1399 ;
+ oboInOwl:hasDefinition "A simple floating point number defining the penalty for gaps that are close together in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1412 a owl:Class ;
+ rdfs:label "Sequence identity" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Sequence identity is the number (%) of matches (identical characters) in positions from an alignment of two molecular sequences." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0865 .
+
+:data_1414 a owl:Class ;
+ rdfs:label "Sequence alignment metadata (quality report)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "Data on molecular sequence alignment quality (estimated accuracy)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1415 a owl:Class ;
+ rdfs:label "Sequence alignment report (site conservation)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2161 ;
+ oboInOwl:hasDefinition "Data on character conservation in a molecular sequence alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation. Use this concept for calculated substitution rates, relative site variability, data on sites with biased properties, highly conserved or very poorly conserved sites, regions, blocks etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1416 a owl:Class ;
+ rdfs:label "Sequence alignment report (site correlation)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "Data on correlations between sites in a molecular sequence alignment, typically to identify possible covarying positions and predict contacts or structural constraints in protein structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1417 a owl:Class ;
+ rdfs:label "Sequence-profile alignment (Domainatrix signature)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0858 ;
+ oboInOwl:hasDefinition "Alignment of molecular sequences to a Domainatrix signature (representing a sequence alignment)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1418 a owl:Class ;
+ rdfs:label "Sequence-profile alignment (HMM)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0858 ;
+ oboInOwl:hasDefinition "Alignment of molecular sequence(s) to a hidden Markov model(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1420 a owl:Class ;
+ rdfs:label "Sequence-profile alignment (fingerprint)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0858 ;
+ oboInOwl:hasDefinition "Alignment of molecular sequences to a protein fingerprint from the PRINTS database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1438 a owl:Class ;
+ rdfs:label "Phylogenetic report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2523 ;
+ oboInOwl:hasDefinition "A report of data concerning or derived from a phylogenetic tree, or from comparing two or more phylogenetic trees." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used for example for reports on confidence, shape or stratigraphic (age) data derived from phylogenetic tree analysis." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1440 a owl:Class ;
+ rdfs:label "Phylogenetic tree report (tree shape)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2523 ;
+ oboInOwl:hasDefinition "Data about the shape of a phylogenetic tree." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1441 a owl:Class ;
+ rdfs:label "Phylogenetic tree report (tree evaluation)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2523 ;
+ oboInOwl:hasDefinition "Data on the confidence of a phylogenetic tree." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1443 a owl:Class ;
+ rdfs:label "Phylogenetic tree report (tree stratigraphic)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2523 ;
+ oboInOwl:hasDefinition "Molecular clock and stratigraphic (age) data derived from phylogenetic tree analysis." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1444 a owl:Class ;
+ rdfs:label "Phylogenetic character contrasts" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Independent contrasts for characters used in a phylogenetic tree, or covariances, regressions and correlations between characters for those contrasts." ;
+ oboInOwl:hasExactSynonym "Phylogenetic report (character contrasts)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2523 .
+
+:data_1446 a owl:Class ;
+ rdfs:label "Comparison matrix (integers)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0874 ;
+ oboInOwl:hasDefinition "Matrix of integer numbers for sequence comparison." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1447 a owl:Class ;
+ rdfs:label "Comparison matrix (floats)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0874 ;
+ oboInOwl:hasDefinition "Matrix of floating point numbers for sequence comparison." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1450 a owl:Class ;
+ rdfs:label "Nucleotide comparison matrix (integers)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1448 ;
+ oboInOwl:hasDefinition "Matrix of integer numbers for nucleotide comparison." ;
+ oboInOwl:hasExactSynonym "Nucleotide substitution matrix (integers)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1451 a owl:Class ;
+ rdfs:label "Nucleotide comparison matrix (floats)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1448 ;
+ oboInOwl:hasDefinition "Matrix of floating point numbers for nucleotide comparison." ;
+ oboInOwl:hasExactSynonym "Nucleotide substitution matrix (floats)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1452 a owl:Class ;
+ rdfs:label "Amino acid comparison matrix (integers)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1449 ;
+ oboInOwl:hasDefinition "Matrix of integer numbers for amino acid comparison." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1453 a owl:Class ;
+ rdfs:label "Amino acid comparison matrix (floats)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1449 ;
+ oboInOwl:hasDefinition "Matrix of floating point numbers for amino acid comparison." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1466 a owl:Class ;
+ rdfs:label "tRNA structure" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a tRNA tertiary (3D) structure, including tmRNA, snoRNAs etc." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1465 .
+
+:data_1469 a owl:Class ;
+ rdfs:label "Protein structure (all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1460 ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a protein tertiary (3D) structure (all atoms)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1470 a owl:Class ;
+ rdfs:label "C-alpha trace" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a protein tertiary (3D) structure (typically C-alpha atoms only)." ;
+ oboInOwl:hasExactSynonym "Protein structure (C-alpha atoms)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be included." ;
+ rdfs:subClassOf :data_1460 .
+
+:data_1471 a owl:Class ;
+ rdfs:label "Protein chain (all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1467 ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (all atoms)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1472 a owl:Class ;
+ rdfs:label "Protein chain (C-alpha atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1467 ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a polypeptide chain tertiary (3D) structure (typically C-alpha atoms only)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be included." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1473 a owl:Class ;
+ rdfs:label "Protein domain (all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1468 ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a protein domain tertiary (3D) structure (all atoms)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1474 a owl:Class ;
+ rdfs:label "Protein domain (C-alpha atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1468 ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a protein domain tertiary (3D) structure (typically C-alpha atoms only)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be included." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1480 a owl:Class ;
+ rdfs:label "Structure alignment (multiple)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0886 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of more than two molecular tertiary (3D) structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1483 a owl:Class ;
+ rdfs:label "Structure alignment (protein pair)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:consider :data_1479,
+ :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two protein tertiary (3D) structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1484 a owl:Class ;
+ rdfs:label "Multiple protein tertiary structure alignment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of more than two protein tertiary (3D) structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1485 a owl:Class ;
+ rdfs:label "Structure alignment (protein all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of protein tertiary (3D) structures (all atoms considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1486 a owl:Class ;
+ rdfs:label "Structure alignment (protein C-alpha atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of protein tertiary (3D) structures (typically C-alpha atoms only considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be considered." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1487 a owl:Class ;
+ rdfs:label "Pairwise protein tertiary structure alignment (all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1488 a owl:Class ;
+ rdfs:label "Pairwise protein tertiary structure alignment (C-alpha atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be included." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1489 a owl:Class ;
+ rdfs:label "Multiple protein tertiary structure alignment (all atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two protein tertiary (3D) structures (all atoms considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1490 a owl:Class ;
+ rdfs:label "Multiple protein tertiary structure alignment (C-alpha atoms)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1481 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two protein tertiary (3D) structures (typically C-alpha atoms only considered)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "C-beta atoms from amino acid side-chains may be included." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1491 a owl:Class ;
+ rdfs:label "Structure alignment (nucleic acid pair)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:consider :data_1479,
+ :data_1482 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of exactly two nucleic acid tertiary (3D) structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1492 a owl:Class ;
+ rdfs:label "Multiple nucleic acid tertiary structure alignment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1482 ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of more than two nucleic acid tertiary (3D) structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1493 a owl:Class ;
+ rdfs:label "RNA structure alignment" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of RNA tertiary (3D) structures." ;
+ oboInOwl:hasExactSynonym "Structure alignment (RNA)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1482 .
+
+:data_1494 a owl:Class ;
+ rdfs:label "Structural transformation matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Matrix to transform (rotate/translate) 3D coordinates, typically the transformation necessary to superimpose two molecular structures." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2082 .
+
+:data_1495 a owl:Class ;
+ rdfs:label "DaliLite hit table" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0887 ;
+ oboInOwl:hasDefinition "DaliLite hit table of protein chain tertiary structure alignment data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The significant and top-scoring hits for regions of the compared structures is shown. Data such as Z-Scores, number of aligned residues, root-mean-square deviation (RMSD) of atoms and sequence identity are given." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1496 a owl:Class ;
+ rdfs:label "Molecular similarity score" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0888 ;
+ oboInOwl:hasDefinition "A score reflecting structural similarities of two molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1497 a owl:Class ;
+ rdfs:label "Root-mean-square deviation" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Root-mean-square deviation (RMSD) is calculated to measure the average distance between superimposed macromolecular coordinates." ;
+ oboInOwl:hasExactSynonym "RMSD" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0888 .
+
+:data_1498 a owl:Class ;
+ rdfs:label "Tanimoto similarity score" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A measure of the similarity between two ligand fingerprints." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A ligand fingerprint is derived from ligand structural data from a Protein DataBank file. It reflects the elements or groups present or absent, covalent bonds and bond orders and the bonded environment in terms of SATIS codes and BLEEP atom types." ;
+ rdfs:subClassOf :data_0888 .
+
+:data_1502 a owl:Class ;
+ rdfs:label "Amino acid index (chemical classes)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Chemical classification (small, aliphatic, aromatic, polar, charged etc) of amino acids." ;
+ oboInOwl:hasExactSynonym "Chemical classes (amino acids)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1501 .
+
+:data_1503 a owl:Class ;
+ rdfs:label "Amino acid pair-wise contact potentials" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Statistical protein contact potentials." ;
+ oboInOwl:hasExactSynonym "Contact potentials (amino acid pair-wise)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2016 .
+
+:data_1505 a owl:Class ;
+ rdfs:label "Amino acid index (molecular weight)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Molecular weights of amino acids." ;
+ oboInOwl:hasExactSynonym "Molecular weight (amino acids)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1501 .
+
+:data_1506 a owl:Class ;
+ rdfs:label "Amino acid index (hydropathy)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Hydrophobic, hydrophilic or charge properties of amino acids." ;
+ oboInOwl:hasExactSynonym "Hydropathy (amino acids)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1501 .
+
+:data_1507 a owl:Class ;
+ rdfs:label "Amino acid index (White-Wimley data)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Experimental free energy values for the water-interface and water-octanol transitions for the amino acids." ;
+ oboInOwl:hasExactSynonym "White-Wimley data (amino acids)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1501 .
+
+:data_1508 a owl:Class ;
+ rdfs:label "Amino acid index (van der Waals radii)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Van der Waals radii of atoms for different amino acid residues." ;
+ oboInOwl:hasExactSynonym "van der Waals radii (amino acids)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1501 .
+
+:data_1509 a owl:Class ;
+ rdfs:label "Enzyme report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "An informative report on a specific enzyme." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1517 a owl:Class ;
+ rdfs:label "Restriction enzyme report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "An informative report on a specific restriction enzyme such as enzyme reference data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This might include name of enzyme, organism, isoschizomers, methylation, source, suppliers, literature references, or data on restriction enzyme patterns such as name of enzyme, recognition site, length of pattern, number of cuts made by enzyme, details of blunt or sticky end cut etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1522 a owl:Class ;
+ rdfs:label "Protein sequence hydropathy plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A protein sequence with annotation on hydrophobic or hydrophilic / charged regions, hydrophobicity plot etc." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Hydrophobic moment is a peptides hydrophobicity measured for different angles of rotation." ;
+ rdfs:subClassOf :data_2970 .
+
+:data_1523 a owl:Class ;
+ rdfs:label "Protein charge plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot of the mean charge of the amino acids within a window of specified length as the window is moved along a protein sequence." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897 .
+
+:data_1529 a owl:Class ;
+ rdfs:label "Protein pKa value" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The pKa value of a protein." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897 .
+
+:data_1532 a owl:Class ;
+ rdfs:label "Protein optical density" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The optical density of a protein." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897 .
+
+:data_1533 a owl:Class ;
+ rdfs:label "Protein subcellular localisation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "An informative report on protein subcellular localisation (nuclear, cytoplasmic, mitochondrial, chloroplast, plastid, membrane etc) or destination (exported / extracellular proteins)." ;
+ oboInOwl:hasExactSynonym "Protein report (subcellular localisation)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1536 a owl:Class ;
+ rdfs:label "MHC peptide immunogenicity report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1534 ;
+ oboInOwl:hasDefinition "A report on the immunogenicity of MHC class I or class II binding peptides." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1540 a owl:Class ;
+ rdfs:label "Protein non-covalent interactions report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:hasDefinition "Data on inter-atomic or inter-residue contacts, distances and interactions in protein structure(s) or on the interactions of protein atoms or residues with non-protein groups." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0906 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1541 a owl:Class ;
+ rdfs:label "Protein flexibility or motion report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_1537 ;
+ oboInOwl:hasDefinition "Informative report on flexibility or motion of a protein structure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1543 a owl:Class ;
+ rdfs:label "Protein surface report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_1537 ;
+ oboInOwl:hasDefinition "Data on the surface properties (shape, hydropathy, electrostatic patches etc) of a protein structure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1550 a owl:Class ;
+ rdfs:label "Protein non-canonical interactions" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_1537 ;
+ oboInOwl:hasDefinition "Non-canonical atomic interactions in protein structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1553 a owl:Class ;
+ rdfs:label "CATH node" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The report (for example http://www.cathdb.info/cathnode/1.10.10.10) includes CATH code (of the node and upper levels in the hierarchy), classification text (of appropriate levels in hierarchy), list of child nodes, representative domain and other relevant data and links." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1554 a owl:Class ;
+ rdfs:label "SCOP node" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1555 a owl:Class ;
+ rdfs:label "EMBASSY domain classification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An EMBASSY domain classification file (DCF) of classification and other data for domains from SCOP or CATH, in EMBL-like format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0907 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1556 a owl:Class ;
+ rdfs:label "CATH class" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'class' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1557 a owl:Class ;
+ rdfs:label "CATH architecture" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'architecture' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1558 a owl:Class ;
+ rdfs:label "CATH topology" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'topology' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1559 a owl:Class ;
+ rdfs:label "CATH homologous superfamily" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'homologous superfamily' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1560 a owl:Class ;
+ rdfs:label "CATH structurally similar group" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'structurally similar group' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1561 a owl:Class ;
+ rdfs:label "CATH functional category" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a protein 'functional category' node from the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1564 a owl:Class ;
+ rdfs:label "Protein fold recognition report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1277 ;
+ oboInOwl:hasDefinition "A report on known protein structural domains or folds that are recognised (identified) in protein sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Methods use some type of mapping between sequence and fold, for example secondary structure prediction and alignment, profile comparison, sequence properties, homologous sequence search, kernel machines etc. Domains and folds might be taken from SCOP or CATH." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1565 a owl:Class ;
+ rdfs:label "Protein-protein interaction report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "protein-protein interaction(s), including interactions between protein domains." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0906 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1567 a owl:Class ;
+ rdfs:label "Protein-nucleic acid interactions report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "protein-DNA/RNA interaction(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0906 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1585 a owl:Class ;
+ rdfs:label "Nucleic acid entropy" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Entropy of hybridised or double stranded nucleic acid (DNA or RNA/DNA)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2985 .
+
+:data_1586 a owl:Class ;
+ rdfs:label "Nucleic acid melting temperature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2139 ;
+ oboInOwl:hasDefinition "Melting temperature of hybridised or double stranded nucleic acid (DNA or RNA/DNA)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1587 a owl:Class ;
+ rdfs:label "Nucleic acid stitch profile" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1583 ;
+ oboInOwl:hasDefinition "Stitch profile of hybridised or double stranded nucleic acid (DNA or RNA/DNA)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1583 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1588 a owl:Class ;
+ rdfs:label "DNA base pair stacking energies data" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DNA base pair stacking energies data." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2088 .
+
+:data_1589 a owl:Class ;
+ rdfs:label "DNA base pair twist angle data" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DNA base pair twist angle data." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2088 .
+
+:data_1590 a owl:Class ;
+ rdfs:label "DNA base trimer roll angles data" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DNA base trimer roll angles data." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2088 .
+
+:data_1591 a owl:Class ;
+ rdfs:label "Vienna RNA parameters" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "RNA parameters used by the Vienna package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1592 a owl:Class ;
+ rdfs:label "Vienna RNA structure constraints" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Structure constraints used by the Vienna package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1593 a owl:Class ;
+ rdfs:label "Vienna RNA concentration data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "RNA concentration data used by the Vienna package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1594 a owl:Class ;
+ rdfs:label "Vienna RNA calculated energy" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1584 ;
+ oboInOwl:hasDefinition "RNA calculated energy data generated by the Vienna package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1595 a owl:Class ;
+ rdfs:label "Base pairing probability matrix dotplot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Dotplot of RNA base pairing probability matrix." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Such as generated by the Vienna package." ;
+ rdfs:subClassOf :data_2088,
+ :data_2884 .
+
+:data_1599 a owl:Class ;
+ rdfs:label "Codon adaptation index" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2865 ;
+ oboInOwl:hasDefinition "A simple measure of synonymous codon usage bias often used to predict gene expression levels." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1600 a owl:Class ;
+ rdfs:label "Codon usage bias plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot of the synonymous codon usage calculated for windows over a nucleotide sequence." ;
+ oboInOwl:hasExactSynonym "Synonymous codon usage statistic plot" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0914 .
+
+:data_1601 a owl:Class ;
+ rdfs:label "Nc statistic" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2865 ;
+ oboInOwl:hasDefinition "The effective number of codons used in a gene sequence. This reflects how far codon usage of a gene departs from equal usage of synonymous codons." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1621 a owl:Class ;
+ rdfs:label "Pharmacogenomic test report" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A human-readable collection of information about the influence of genotype on drug response." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "The report might correlate gene expression or single-nucleotide polymorphisms with drug efficacy or toxicity." ;
+ rdfs:subClassOf :data_0920 .
+
+:data_1634 a owl:Class ;
+ rdfs:label "Linkage disequilibrium (report)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report on linkage disequilibrium; the non-random association of alleles or polymorphisms at two or more loci (not necessarily on the same chromosome)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0927 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1642 a owl:Class ;
+ rdfs:label "Affymetrix probe sets library file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2717 ;
+ oboInOwl:hasDefinition "Affymetrix library file of information about which probes belong to which probe set." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1643 a owl:Class ;
+ rdfs:label "Affymetrix probe sets information library file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2717 ;
+ oboInOwl:hasDefinition "Affymetrix library file of information about the probe sets such as the gene name with which the probe set is associated." ;
+ oboInOwl:hasRelatedSynonym "GIN file" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1646 a owl:Class ;
+ rdfs:label "Molecular weights standard fingerprint" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:hasDefinition "Standard protonated molecular masses from trypsin (modified porcine trypsin, Promega) and keratin peptides, used in EMBOSS." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0944 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1656 a owl:Class ;
+ rdfs:label "Metabolic pathway report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report typically including a map (diagram) of a metabolic pathway." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:comment "This includes carbohydrate, energy, lipid, nucleotide, amino acid, glycan, PK/NRP, cofactor/vitamin, secondary metabolite, xenobiotics etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1657 a owl:Class ;
+ rdfs:label "Genetic information processing pathway report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "genetic information processing pathways." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1658 a owl:Class ;
+ rdfs:label "Environmental information processing pathway report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "environmental information processing pathways." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1659 a owl:Class ;
+ rdfs:label "Signal transduction pathway report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report typically including a map (diagram) of a signal transduction pathway." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1660 a owl:Class ;
+ rdfs:label "Cellular process pathways report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Topic concernning cellular process pathways." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1661 a owl:Class ;
+ rdfs:label "Disease pathway or network report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "disease pathways, typically of human disease." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0906 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1662 a owl:Class ;
+ rdfs:label "Drug structure relationship map" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1696 ;
+ oboInOwl:hasDefinition "A report typically including a map (diagram) of drug structure relationships." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1696 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1663 a owl:Class ;
+ rdfs:label "Protein interaction networks" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:consider :data_2600 ;
+ oboInOwl:hasDefinition "networks of protein interactions." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1664 a owl:Class ;
+ rdfs:label "MIRIAM datatype" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1883 ;
+ oboInOwl:hasDefinition "An entry (data type) from the Minimal Information Requested in the Annotation of Biochemical Models (MIRIAM) database of data resources." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A MIRIAM entry describes a MIRIAM data type including the official name, synonyms, root URI, identifier pattern (regular expression applied to a unique identifier of the data type) and documentation. Each data type can be associated with several resources. Each resource is a physical location of a service (typically a database) providing information on the elements of a data type. Several resources may exist for each data type, provided the same (mirrors) or different information. MIRIAM provides a stable and persistent reference to its data types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1667 a owl:Class ;
+ rdfs:label "E-value" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A simple floating point number defining the lower or upper limit of an expectation value (E-value)." ;
+ oboInOwl:hasExactSynonym "Expectation value" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "An expectation value (E-Value) is the expected number of observations which are at least as extreme as observations expected to occur by random chance. The E-value describes the number of hits with a given score or better that are expected to occur at random when searching a database of a particular size. It decreases exponentially with the score (S) of a hit. A low E value indicates a more significant score." ;
+ rdfs:subClassOf :data_0951 .
+
+:data_1668 a owl:Class ;
+ rdfs:label "Z-value" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The z-value is the number of standard deviations a data value is above or below a mean value." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A z-value might be specified as a threshold for reporting hits from database searches." ;
+ rdfs:subClassOf :data_0951 .
+
+:data_1669 a owl:Class ;
+ rdfs:label "P-value" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The P-value is the probability of obtaining by random chance a result that is at least as extreme as an observed result, assuming a NULL hypothesis is true." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A z-value might be specified as a threshold for reporting hits from database searches." ;
+ rdfs:subClassOf :data_0951 .
+
+:data_1670 a owl:Class ;
+ rdfs:label "Database version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "Information on a database (or ontology) version, for example name, version number and release date." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1671 a owl:Class ;
+ rdfs:label "Tool version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0958 ;
+ oboInOwl:hasDefinition "Information on an application version, for example name, version number and release date." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1672 a owl:Class ;
+ rdfs:label "CATH version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "Information on a version of the CATH database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1673 a owl:Class ;
+ rdfs:label "Swiss-Prot to PDB mapping" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0954 ;
+ oboInOwl:hasDefinition "Cross-mapping of Swiss-Prot codes to PDB identifiers." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1674 a owl:Class ;
+ rdfs:label "Sequence database cross-references" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2093 ;
+ oboInOwl:hasDefinition "Cross-references from a sequence record to other databases." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1675 a owl:Class ;
+ rdfs:label "Job status" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "Metadata on the status of a submitted job." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Values for EBI services are 'DONE' (job has finished and the results can then be retrieved), 'ERROR' (the job failed or no results where found), 'NOT_FOUND' (the job id is no longer available; job results might be deleted, 'PENDING' (the job is in a queue waiting processing), 'RUNNING' (the job is currently being processed)." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1676 a owl:Class ;
+ rdfs:label "Job ID" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.0" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "The (typically numeric) unique identifier of a submitted job." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1677 a owl:Class ;
+ rdfs:label "Job type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of job, for example interactive or non-interactive." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1678 a owl:Class ;
+ rdfs:label "Tool log" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "A report of tool-specific metadata on some analysis or process performed, for example a log of diagnostic or error messages." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1679 a owl:Class ;
+ rdfs:label "DaliLite log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "DaliLite log file describing all the steps taken by a DaliLite alignment of two protein structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1680 a owl:Class ;
+ rdfs:label "STRIDE log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "STRIDE log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1681 a owl:Class ;
+ rdfs:label "NACCESS log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "NACCESS log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1682 a owl:Class ;
+ rdfs:label "EMBOSS wordfinder log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS wordfinder log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1683 a owl:Class ;
+ rdfs:label "EMBOSS domainatrix log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS (EMBASSY) domainatrix application log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1684 a owl:Class ;
+ rdfs:label "EMBOSS sites log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS (EMBASSY) sites application log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1685 a owl:Class ;
+ rdfs:label "EMBOSS supermatcher error file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS (EMBASSY) supermatcher error file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1686 a owl:Class ;
+ rdfs:label "EMBOSS megamerger log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS megamerger log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1687 a owl:Class ;
+ rdfs:label "EMBOSS whichdb log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS megamerger log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1688 a owl:Class ;
+ rdfs:label "EMBOSS vectorstrip log file" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "EMBOSS vectorstrip log file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1689 a owl:Class ;
+ rdfs:label "Username" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A username on a computer system." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2101 .
+
+:data_1690 a owl:Class ;
+ rdfs:label "Password" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A password on a computer system." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2101 .
+
+:data_1691 a owl:Class ;
+ rdfs:label "Email address" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby:Email",
+ "Moby:EmailAddress" ;
+ oboInOwl:hasDefinition "A valid email address of an end-user." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2101 .
+
+:data_1692 a owl:Class ;
+ rdfs:label "Person name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a person." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2118 .
+
+:data_1693 a owl:Class ;
+ rdfs:label "Number of iterations" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Number of iterations of an algorithm." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1694 a owl:Class ;
+ rdfs:label "Number of output entities" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Number of entities (for example database hits, sequences, alignments etc) to write to an output file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1695 a owl:Class ;
+ rdfs:label "Hit sort order" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Controls the order of hits (reported matches) in an output file from a database search." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1707 a owl:Class ;
+ rdfs:label "Phylogenetic tree image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An image (for viewing or printing) of a phylogenetic tree including (typically) a plot of rooted or unrooted phylogenies, cladograms, circular trees or phenograms and associated information." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "See also 'Phylogenetic tree'" ;
+ rdfs:subClassOf :data_2968 .
+
+:data_1708 a owl:Class ;
+ rdfs:label "RNA secondary structure image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image of RNA secondary structure, knots, pseudoknots etc." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2968 .
+
+:data_1711 a owl:Class ;
+ rdfs:label "Sequence alignment image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image of two or more aligned molecular sequences possibly annotated with alignment features." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2968 .
+
+:data_1715 a owl:Class ;
+ rdfs:label "BioPax term" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the BioPax ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1716 a owl:Class ;
+ rdfs:label "GO" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term definition from The Gene Ontology (GO)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1717 a owl:Class ;
+ rdfs:label "MeSH" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the MeSH vocabulary." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1718 a owl:Class ;
+ rdfs:label "HGNC" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the HGNC controlled vocabulary." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1719 a owl:Class ;
+ rdfs:label "NCBI taxonomy vocabulary" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the NCBI taxonomy vocabulary." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1720 a owl:Class ;
+ rdfs:label "Plant ontology term" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the Plant Ontology (PO)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1721 a owl:Class ;
+ rdfs:label "UMLS" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the UMLS vocabulary." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1722 a owl:Class ;
+ rdfs:label "FMA" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from Foundational Model of Anatomy." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Classifies anatomical entities according to their shared characteristics (genus) and distinguishing characteristics (differentia). Specifies the part-whole and spatial relationships of the entities, morphological transformation of the entities during prenatal development and the postnatal life cycle and principles, rules and definitions according to which classes and relationships in the other three components of FMA are represented." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1723 a owl:Class ;
+ rdfs:label "EMAP" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the EMAP mouse ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1724 a owl:Class ;
+ rdfs:label "ChEBI" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the ChEBI ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1725 a owl:Class ;
+ rdfs:label "MGED" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the MGED ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1726 a owl:Class ;
+ rdfs:label "myGrid" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0966 ;
+ oboInOwl:hasDefinition "A term from the myGrid ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The ontology is provided as two components, the service ontology and the domain ontology. The domain ontology acts provides concepts for core bioinformatics data types and their relations. The service ontology describes the physical and operational features of web services." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1727 a owl:Class ;
+ rdfs:label "GO (biological process)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2858 ;
+ oboInOwl:hasDefinition "A term definition for a biological process from the Gene Ontology (GO)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Data Type is an enumerated string." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1728 a owl:Class ;
+ rdfs:label "GO (molecular function)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2858 ;
+ oboInOwl:hasDefinition "A term definition for a molecular function from the Gene Ontology (GO)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Data Type is an enumerated string." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1729 a owl:Class ;
+ rdfs:label "GO (cellular component)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2858 ;
+ oboInOwl:hasDefinition "A term definition for a cellular component from the Gene Ontology (GO)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Data Type is an enumerated string." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1730 a owl:Class ;
+ rdfs:label "Ontology relation type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0967 ;
+ oboInOwl:hasDefinition "A relation type defined in an ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1731 a owl:Class ;
+ rdfs:label "Ontology concept definition" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The definition of a concept from an ontology." ;
+ oboInOwl:hasExactSynonym "Ontology class definition" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0967 .
+
+:data_1732 a owl:Class ;
+ rdfs:label "Ontology concept comment" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0967 ;
+ oboInOwl:hasDefinition "A comment on a concept from an ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1733 a owl:Class ;
+ rdfs:label "Ontology concept reference" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2093 ;
+ oboInOwl:hasDefinition "Reference for a concept from an ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1738 a owl:Class ;
+ rdfs:label "doc2loc document information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0970 ;
+ oboInOwl:hasDefinition "Information on a published article provided by the doc2loc program." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The doc2loc output includes the url, format, type and availability code of a document for every service provider." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1742 a owl:Class ;
+ rdfs:label "PDB residue number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:PDB_residue_no",
+ "WHATIF: pdb_number" ;
+ oboInOwl:hasDefinition "A residue identifier (a string) from a PDB file." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1016 .
+
+:data_1744 a owl:Class ;
+ rdfs:label "Atomic x coordinate" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1743 ;
+ oboInOwl:hasDbXref "PDBML:_atom_site.Cartn_x in PDBML",
+ "WHATIF: PDBx_Cartn_x" ;
+ oboInOwl:hasDefinition "Cartesian x coordinate of an atom (in a molecular structure)." ;
+ oboInOwl:hasExactSynonym "Cartesian x coordinate" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1743 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1745 a owl:Class ;
+ rdfs:label "Atomic y coordinate" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1743 ;
+ oboInOwl:hasDbXref "PDBML:_atom_site.Cartn_y in PDBML",
+ "WHATIF: PDBx_Cartn_y" ;
+ oboInOwl:hasDefinition "Cartesian y coordinate of an atom (in a molecular structure)." ;
+ oboInOwl:hasExactSynonym "Cartesian y coordinate" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1743 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1746 a owl:Class ;
+ rdfs:label "Atomic z coordinate" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1743 ;
+ oboInOwl:hasDbXref "PDBML:_atom_site.Cartn_z",
+ "WHATIF: PDBx_Cartn_z" ;
+ oboInOwl:hasDefinition "Cartesian z coordinate of an atom (in a molecular structure)." ;
+ oboInOwl:hasExactSynonym "Cartesian z coordinate" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1743 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1748 a owl:Class ;
+ rdfs:label "PDB atom name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_PDB_atom_name",
+ "WHATIF: PDBx_auth_atom_id",
+ "WHATIF: PDBx_type_symbol",
+ "WHATIF: alternate_atom",
+ "WHATIF: atom_type" ;
+ oboInOwl:hasDefinition "Identifier (a string) of a specific atom from a PDB file for a molecular structure." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1757 .
+
+:data_1755 a owl:Class ;
+ rdfs:label "Protein atom" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Data on a single atom from a protein structure." ;
+ oboInOwl:hasExactSynonym "Atom data" ;
+ oboInOwl:hasRelatedSynonym "CHEBI:33250" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf :data_1460 .
+
+:data_1756 a owl:Class ;
+ rdfs:label "Protein residue" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Data on a single amino acid residue position in a protein structure." ;
+ oboInOwl:hasExactSynonym "Residue" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf :data_1460 .
+
+:data_1758 a owl:Class ;
+ rdfs:label "PDB residue name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "WHATIF: type" ;
+ oboInOwl:hasDefinition "Three-letter amino acid residue names as used in PDB files." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2564 .
+
+:data_1759 a owl:Class ;
+ rdfs:label "PDB model number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_PDB_model_num",
+ "WHATIF: model_number" ;
+ oboInOwl:hasDefinition "Identifier of a model structure from a PDB file." ;
+ oboInOwl:hasExactSynonym "Model number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_3035 .
+
+:data_1762 a owl:Class ;
+ rdfs:label "CATH domain report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Summary of domain classification information for a CATH domain." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The report (for example http://www.cathdb.info/domain/1cukA01) includes CATH codes for levels in the hierarchy for the domain, level descriptions and relevant data and links." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1764 a owl:Class ;
+ rdfs:label "CATH representative domain sequences (ATOM)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1235 ;
+ oboInOwl:hasDefinition "FASTA sequence database (based on ATOM records in PDB) for CATH domains (clustered at different levels of sequence identity)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1765 a owl:Class ;
+ rdfs:label "CATH representative domain sequences (COMBS)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1235 ;
+ oboInOwl:hasDefinition "FASTA sequence database (based on COMBS sequence data) for CATH domains (clustered at different levels of sequence identity)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1766 a owl:Class ;
+ rdfs:label "CATH domain sequences (ATOM)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "FASTA sequence database for all CATH domains (based on PDB ATOM records)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1767 a owl:Class ;
+ rdfs:label "CATH domain sequences (COMBS)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "FASTA sequence database for all CATH domains (based on COMBS sequence data)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1771 a owl:Class ;
+ rdfs:label "Sequence version" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Information on an molecular sequence version." ;
+ oboInOwl:hasExactSynonym "Sequence version information" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2534 .
+
+:data_1776 a owl:Class ;
+ rdfs:label "Protein report (function)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "Report on general functional properties of specific protein(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "For properties that can be mapped to a sequence, use 'Sequence report' instead." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1783 a owl:Class ;
+ rdfs:label "Gene name (ASPGD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:ASPGD_LOCUS" ;
+ oboInOwl:hasDefinition "Name of a gene from Aspergillus Genome Database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1784 a owl:Class ;
+ rdfs:label "Gene name (CGD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:CGD_LOCUS" ;
+ oboInOwl:hasDefinition "Name of a gene from Candida Genome Database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1785 a owl:Class ;
+ rdfs:label "Gene name (dictyBase)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:dictyBase" ;
+ oboInOwl:hasDefinition "Name of a gene from dictyBase database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1786 a owl:Class ;
+ rdfs:label "Gene name (EcoGene primary)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:ECOGENE_G" ;
+ oboInOwl:hasDefinition "Primary name of a gene from EcoGene Database." ;
+ oboInOwl:hasExactSynonym "EcoGene primary gene name" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1787 a owl:Class ;
+ rdfs:label "Gene name (MaizeGDB)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:MaizeGDB_Locus" ;
+ oboInOwl:hasDefinition "Name of a gene from MaizeGDB (maize genes) database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1788 a owl:Class ;
+ rdfs:label "Gene name (SGD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:SGD_LOCUS" ;
+ oboInOwl:hasDefinition "Name of a gene from Saccharomyces Genome Database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1789 a owl:Class ;
+ rdfs:label "Gene name (TGD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:TGD_LOCUS" ;
+ oboInOwl:hasDefinition "Name of a gene from Tetrahymena Genome Database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1790 a owl:Class ;
+ rdfs:label "Gene name (CGSC)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: CGSC" ;
+ oboInOwl:hasDefinition "Symbol of a gene from E.coli Genetic Stock Center." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1791 a owl:Class ;
+ rdfs:label "Gene name (HGNC)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ :regex "HGNC:[0-9]{1,5}" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: HGNC_gene" ;
+ oboInOwl:hasDefinition "Symbol of a gene approved by the HUGO Gene Nomenclature Committee." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1792 a owl:Class ;
+ rdfs:label "Gene name (MGD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ :regex "MGI:[0-9]+" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: MGD" ;
+ oboInOwl:hasDefinition "Symbol of a gene from the Mouse Genome Database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1793 a owl:Class ;
+ rdfs:label "Gene name (Bacillus subtilis)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: SUBTILISTG" ;
+ oboInOwl:hasDefinition "Symbol of a gene from Bacillus subtilis Genome Sequence Project." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1794 a owl:Class ;
+ rdfs:label "Gene ID (PlasmoDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: ApiDB_PlasmoDB" ;
+ oboInOwl:hasDefinition "Identifier of a gene from PlasmoDB Plasmodium Genome Resource." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1796 a owl:Class ;
+ rdfs:label "Gene ID (FlyBase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: FB",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: FlyBase" ;
+ oboInOwl:hasDefinition "Gene identifier from FlyBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1797 a owl:Class ;
+ rdfs:label "Gene ID (GeneDB Glossina morsitans)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1035 ;
+ oboInOwl:hasDefinition "Gene identifier from Glossina morsitans GeneDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1798 a owl:Class ;
+ rdfs:label "Gene ID (GeneDB Leishmania major)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1035 ;
+ oboInOwl:hasDefinition "Gene identifier from Leishmania major GeneDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1799 a owl:Class ;
+ rdfs:label "Gene ID (GeneDB Plasmodium falciparum)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1035 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Pfalciparum" ;
+ oboInOwl:hasDefinition "Gene identifier from Plasmodium falciparum GeneDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1800 a owl:Class ;
+ rdfs:label "Gene ID (GeneDB Schizosaccharomyces pombe)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1035 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Spombe" ;
+ oboInOwl:hasDefinition "Gene identifier from Schizosaccharomyces pombe GeneDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1801 a owl:Class ;
+ rdfs:label "Gene ID (GeneDB Trypanosoma brucei)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1035 ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: GeneDB_Tbrucei" ;
+ oboInOwl:hasDefinition "Gene identifier from Trypanosoma brucei GeneDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1802 a owl:Class ;
+ rdfs:label "Gene ID (Gramene)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: GR_GENE",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: GR_gene" ;
+ oboInOwl:hasDefinition "Gene identifier from Gramene database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1803 a owl:Class ;
+ rdfs:label "Gene ID (Virginia microbial)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: PAMGO_VMD",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: VMD" ;
+ oboInOwl:hasDefinition "Gene identifier from Virginia Bioinformatics Institute microbial database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1804 a owl:Class ;
+ rdfs:label "Gene ID (SGN)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: SGN" ;
+ oboInOwl:hasDefinition "Gene identifier from Sol Genomics Network." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1805 a owl:Class ;
+ rdfs:label "Gene ID (WormBase)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "WBGene[0-9]{8}" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: WB",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: WormBase" ;
+ oboInOwl:hasDefinition "Gene identifier used by WormBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2113,
+ :data_2295 .
+
+:data_1806 a owl:Class ;
+ rdfs:label "Gene synonym" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Any name (other than the recommended one) for a gene." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1807 a owl:Class ;
+ rdfs:label "ORF name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of an open reading frame attributed by a sequencing project." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2795 .
+
+:data_1852 a owl:Class ;
+ rdfs:label "Sequence assembly component" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0925 ;
+ oboInOwl:hasDefinition "A component of a larger sequence assembly." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1853 a owl:Class ;
+ rdfs:label "Chromosome annotation (aberration)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0919 ;
+ oboInOwl:hasDefinition "A report on a chromosome aberration such as abnormalities in chromosome structure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1856 a owl:Class ;
+ rdfs:label "PDB insertion code" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_PDB_ins_code",
+ "WHATIF: insertion_code" ;
+ oboInOwl:hasDefinition "An insertion code (part of the residue number) for an amino acid residue from a PDB file." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1016 .
+
+:data_1857 a owl:Class ;
+ rdfs:label "Atomic occupancy" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "WHATIF: PDBx_occupancy" ;
+ oboInOwl:hasDefinition "The fraction of an atom type present at a site in a molecular structure." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "The sum of the occupancies of all the atom types at a site should not normally significantly exceed 1.0." ;
+ rdfs:subClassOf :data_1917 .
+
+:data_1858 a owl:Class ;
+ rdfs:label "Isotropic B factor" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "WHATIF: PDBx_B_iso_or_equiv" ;
+ oboInOwl:hasDefinition "Isotropic B factor (atomic displacement parameter) for an atom from a PDB file." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1917 .
+
+:data_1859 a owl:Class ;
+ rdfs:label "Deletion map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A cytogenetic map showing chromosome banding patterns in mutant cell lines relative to the wild type." ;
+ oboInOwl:hasExactSynonym "Deletion-based cytogenetic map" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A cytogenetic map is built from a set of mutant cell lines with sub-chromosomal deletions and a reference wild-type line ('genome deletion panel'). The panel is used to map markers onto the genome by comparing mutant to wild-type banding patterns. Markers are linked (occur in the same deleted region) if they share the same banding pattern (presence or absence) as the deletion panel." ;
+ rdfs:subClassOf :data_1283 .
+
+:data_1860 a owl:Class ;
+ rdfs:label "QTL map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A genetic map which shows the approximate location of quantitative trait loci (QTL) between two or more markers." ;
+ oboInOwl:hasExactSynonym "Quantitative trait locus map" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1278 .
+
+:data_1864 a owl:Class ;
+ rdfs:label "Map set data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_2019 ;
+ oboInOwl:hasDefinition "Data describing a set of multiple genetic or physical maps, typically sharing a common set of features which are mapped." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2019 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1865 a owl:Class ;
+ rdfs:label "Map feature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1255,
+ :data_1276,
+ :data_2019 ;
+ oboInOwl:hasDefinition "A feature which may mapped (positioned) on a genetic or other type of map." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Mappable features may be based on Gramene's notion of map features; see http://www.gramene.org/db/cmap/feature_type_info." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1866 a owl:Class ;
+ rdfs:label "Map type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A designation of the type of map (genetic map, physical map, sequence map etc) or map set." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Map types may be based on Gramene's notion of a map type; see http://www.gramene.org/db/cmap/map_type_info." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1867 a owl:Class ;
+ rdfs:label "Protein fold name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a protein fold." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_1872 a owl:Class ;
+ rdfs:label "Taxonomic classification" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby:GCP_Taxon",
+ "Moby:TaxonName",
+ "Moby:TaxonScientificName",
+ "Moby:TaxonTCS",
+ "Moby:iANT_organism-xml" ;
+ oboInOwl:hasDefinition "The full name for a group of organisms, reflecting their biological classification and (usually) conforming to a standard nomenclature." ;
+ oboInOwl:hasExactSynonym "Taxonomic information",
+ "Taxonomic name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Name components correspond to levels in a taxonomic hierarchy (e.g. 'Genus', 'Species', etc.) Meta information such as a reference where the name was defined and a date might be included." ;
+ rdfs:subClassOf :data_2909 .
+
+:data_1873 a owl:Class ;
+ rdfs:label "iHOP organism ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:iHOPorganism" ;
+ oboInOwl:hasDefinition "A unique identifier for an organism used in the iHOP database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2908 .
+
+:data_1874 a owl:Class ;
+ rdfs:label "Genbank common name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Common name for an organism as used in the GenBank database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2909 .
+
+:data_1875 a owl:Class ;
+ rdfs:label "NCBI taxon" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a taxon from the NCBI taxonomy database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1868 .
+
+:data_1877 a owl:Class ;
+ rdfs:label "Synonym" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0968 ;
+ oboInOwl:hasDefinition "An alternative for a word." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1878 a owl:Class ;
+ rdfs:label "Misspelling" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0968 ;
+ oboInOwl:hasDefinition "A common misspelling of a word." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1879 a owl:Class ;
+ rdfs:label "Acronym" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0968 ;
+ oboInOwl:hasDefinition "An abbreviation of a phrase or word." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1880 a owl:Class ;
+ rdfs:label "Misnomer" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0968 ;
+ oboInOwl:hasDefinition "A term which is likely to be misleading of its meaning." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1882 a owl:Class ;
+ rdfs:label "DragonDB author identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier representing an author in the DragonDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1881 .
+
+:data_1884 a owl:Class ;
+ rdfs:label "UniProt keywords" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0582 ;
+ oboInOwl:hasDefinition "A controlled vocabulary for words and phrases that can appear in the keywords field (KW line) of entries from the UniProt database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1885 a owl:Class ;
+ rdfs:label "Gene ID (GeneFarm)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:GENEFARM_GeneID" ;
+ oboInOwl:hasDefinition "Identifier of a gene from the GeneFarm database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1886 a owl:Class ;
+ rdfs:label "Blattner number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:Blattner_number" ;
+ oboInOwl:hasDefinition "The blattner identifier for a gene." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1887 a owl:Class ;
+ rdfs:label "Gene ID (MIPS Maize)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2285 ;
+ oboInOwl:hasDbXref "Moby_namespace:MIPS_GE_Maize" ;
+ oboInOwl:hasDefinition "Identifier for genetic elements in MIPS Maize database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1888 a owl:Class ;
+ rdfs:label "Gene ID (MIPS Medicago)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2285 ;
+ oboInOwl:hasDbXref "Moby_namespace:MIPS_GE_Medicago" ;
+ oboInOwl:hasDefinition "Identifier for genetic elements in MIPS Medicago database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1889 a owl:Class ;
+ rdfs:label "Gene name (DragonDB)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "Moby_namespace:DragonDB_Gene" ;
+ oboInOwl:hasDefinition "The name of an Antirrhinum Gene from the DragonDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1890 a owl:Class ;
+ rdfs:label "Gene name (Arabidopsis)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "A unique identifier for an Arabidopsis gene, which is an acronym or abbreviation of the gene name." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1891 a owl:Class ;
+ rdfs:label "iHOP symbol" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:iHOPsymbol" ;
+ oboInOwl:hasDefinition "A unique identifier of a protein or gene used in the iHOP database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109,
+ :data_2295,
+ :data_2907 .
+
+:data_1892 a owl:Class ;
+ rdfs:label "Gene name (GeneFarm)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Name of a gene from the GeneFarm database." ;
+ oboInOwl:hasExactSynonym "GeneFarm gene ID" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1895 a owl:Class ;
+ rdfs:label "Locus ID (AGI)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "AT[1-5]G[0-9]{5}" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs:AGI_LocusCode" ;
+ oboInOwl:hasDefinition "Locus identifier for Arabidopsis Genome Initiative (TAIR, TIGR and MIPS databases)" ;
+ oboInOwl:hasExactSynonym "AGI ID",
+ "AGI identifier",
+ "AGI locus code",
+ "Arabidopsis gene loci number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1896 a owl:Class ;
+ rdfs:label "Locus ID (ASPGD)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: ASPGD",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: ASPGDID" ;
+ oboInOwl:hasDefinition "Identifier for loci from ASPGD (Aspergillus Genome Database)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1897 a owl:Class ;
+ rdfs:label "Locus ID (MGG)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: Broad_MGG" ;
+ oboInOwl:hasDefinition "Identifier for loci from Magnaporthe grisea Database at the Broad Institute." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1898 a owl:Class ;
+ rdfs:label "Locus ID (CGD)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: CGD",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: CGDID" ;
+ oboInOwl:hasDefinition "Identifier for loci from CGD (Candida Genome Database)." ;
+ oboInOwl:hasExactSynonym "CGD locus identifier",
+ "CGDID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1899 a owl:Class ;
+ rdfs:label "Locus ID (CMR)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: JCVI_CMR",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: TIGR_CMR" ;
+ oboInOwl:hasDefinition "Locus identifier for Comprehensive Microbial Resource at the J. Craig Venter Institute." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1900 a owl:Class ;
+ rdfs:label "NCBI locus tag" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:LocusID",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: NCBI_locus_tag" ;
+ oboInOwl:hasDefinition "Identifier for loci from NCBI database." ;
+ oboInOwl:hasExactSynonym "Locus ID (NCBI)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1901 a owl:Class ;
+ rdfs:label "Locus ID (SGD)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: SGD",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: SGDID" ;
+ oboInOwl:hasDefinition "Identifier for loci from SGD (Saccharomyces Genome Database)." ;
+ oboInOwl:hasExactSynonym "SGDID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091,
+ :data_2632 .
+
+:data_1902 a owl:Class ;
+ rdfs:label "Locus ID (MMP)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:MMP_Locus" ;
+ oboInOwl:hasDefinition "Identifier of loci from Maize Mapping Project." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1903 a owl:Class ;
+ rdfs:label "Locus ID (DictyBase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:DDB_gene" ;
+ oboInOwl:hasDefinition "Identifier of locus from DictyBase (Dictyostelium discoideum)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1904 a owl:Class ;
+ rdfs:label "Locus ID (EntrezGene)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:EntrezGene_EntrezGeneID",
+ "Moby_namespace:EntrezGene_ID" ;
+ oboInOwl:hasDefinition "Identifier of a locus from EntrezGene database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1905 a owl:Class ;
+ rdfs:label "Locus ID (MaizeGDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:MaizeGDB_Locus" ;
+ oboInOwl:hasDefinition "Identifier of locus from MaizeGDB (Maize genome database)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_1906 a owl:Class ;
+ rdfs:label "Quantitative trait locus" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2012 ;
+ oboInOwl:hasDbXref "Moby:SO_QTL" ;
+ oboInOwl:hasDefinition "A stretch of DNA that is closely linked to the genes underlying a quantitative trait (a phenotype that varies in degree and depends upon the interactions between multiple genes and their environment)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A QTL sometimes but does not necessarily correspond to a gene." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_1907 a owl:Class ;
+ rdfs:label "Gene ID (KOME)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:GeneId" ;
+ oboInOwl:hasDefinition "Identifier of a gene from the KOME database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_1908 a owl:Class ;
+ rdfs:label "Locus ID (Tropgene)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby:Tropgene_locus" ;
+ oboInOwl:hasDefinition "Identifier of a locus from the Tropgene database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_2007 a owl:Class ;
+ rdfs:label "UniProt keyword" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "Moby_namespace:SP_KW",
+ "http://www.geneontology.org/doc/GO.xrf_abbs: SP_KW" ;
+ oboInOwl:hasDefinition "A word or phrase that can appear in the keywords field (KW line) of entries from the UniProt database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0968 .
+
+:data_2009 a owl:Class ;
+ rdfs:label "Ordered locus name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1893 ;
+ oboInOwl:hasDefinition "A name for a genetic locus conforming to a scheme that names loci (such as predicted genes) depending on their position in a molecular sequence, for example a completely sequenced genome or chromosome." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2018 a owl:Class ;
+ rdfs:label "Annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "A human-readable collection of information which (typically) is generated or collated by hand and which describes a biological entity, phenomena or associated primary (e.g. sequence or structural) data, as distinct from the primary data itself and computer-generated reports derived from it." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2022 a owl:Class ;
+ rdfs:label "Vienna RNA structural data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1465 ;
+ oboInOwl:hasDefinition "Data used by the Vienna RNA analysis package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2023 a owl:Class ;
+ rdfs:label "Sequence mask parameter" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Data used to replace (mask) characters in a molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2025 a owl:Class ;
+ rdfs:label "Michaelis Menten plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot giving an approximation of the kinetics of an enzyme-catalysed reaction, assuming simple kinetics (i.e. no intermediate or product inhibition, allostericity or cooperativity). It plots initial reaction rate to the substrate concentration (S) from which the maximum rate (vmax) is apparent." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2024 .
+
+:data_2026 a owl:Class ;
+ rdfs:label "Hanes Woolf plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot based on the Michaelis Menten equation of enzyme kinetics plotting the ratio of the initial substrate concentration (S) against the reaction velocity (v)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2024 .
+
+:data_2028 a owl:Class ;
+ rdfs:label "Experimental data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2531,
+ :data_3108 ;
+ oboInOwl:hasDefinition "Raw data from or annotation on laboratory experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2041 a owl:Class ;
+ rdfs:label "Genome version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2711 ;
+ oboInOwl:hasDefinition "Information on a genome version." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2042 a owl:Class ;
+ rdfs:label "Evidence" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Typically a human-readable summary of body of facts or information indicating why a statement is true or valid. This may include a computational prediction, laboratory experiment, literature reference etc." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0006 .
+
+:data_2043 a owl:Class ;
+ rdfs:label "Sequence record lite" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A molecular sequence and minimal metadata, typically an identifier of the sequence and/or a comment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2046 a owl:Class ;
+ rdfs:label "Nucleic acid sequence record (lite)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A nucleic acid sequence and minimal metadata, typically an identifier of the sequence and/or a comment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2047 a owl:Class ;
+ rdfs:label "Protein sequence record (lite)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A protein sequence and minimal metadata, typically an identifier of the sequence and/or a comment." ;
+ oboInOwl:hasExactSynonym "Sequence record lite (protein)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2053 a owl:Class ;
+ rdfs:label "Structural data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0883,
+ :data_2085 ;
+ oboInOwl:hasDefinition "Data concerning molecular structural data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2070 a owl:Class ;
+ rdfs:label "Sequence motif (nucleic acid)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A nucleotide sequence motif." ;
+ oboInOwl:hasExactSynonym "Nucleic acid sequence motif" ;
+ oboInOwl:hasNarrowSynonym "DNA sequence motif",
+ "RNA sequence motif" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1353 .
+
+:data_2079 a owl:Class ;
+ rdfs:label "Search parameter" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Some simple value controlling a search operation, typically a search of a database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2081 a owl:Class ;
+ rdfs:label "Secondary structure" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0883 ;
+ oboInOwl:hasDefinition "The secondary structure assignment (predicted or real) of a nucleic acid or protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2086 a owl:Class ;
+ rdfs:label "Nucleic acid structure data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :operation_0912 ;
+ oboInOwl:consider :data_0912,
+ :data_3128 ;
+ oboInOwl:hasDefinition "A report on nucleic acid structure-derived data, describing structural properties of a DNA molecule, or any other annotation or information about specific nucleic acid 3D structure(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2090 a owl:Class ;
+ rdfs:label "Database entry version information" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "Information on a database (or ontology) entry version, such as name (or other identifier) or parent database, unique identifier of entry, data, author and so on." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2092 a owl:Class ;
+ rdfs:label "SNP" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "single nucleotide polymorphism (SNP) in a DNA sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2098 a owl:Class ;
+ rdfs:label "Job identifier" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "An identifier of a submitted job." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:seeAlso "http://wsio.org/data_009" ;
+ rdfs:subClassOf :data_0976 .
+
+:data_2100 a owl:Class ;
+ rdfs:label "Type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing the type of a thing, typically an enumerated string (a string with one of a limited set of values)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:seeAlso "http://purl.org/dc/elements/1.1/type" ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2102 a owl:Class ;
+ rdfs:label "KEGG organism code" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A three-letter code used in the KEGG databases to uniquely identify organisms." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2909 .
+
+:data_2103 a owl:Class ;
+ rdfs:label "Gene name (KEGG GENES)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ :regex "[a-zA-Z_0-9]+:[a-zA-Z_0-9\\.-]*" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDbXref "Moby_namespace:GeneId" ;
+ oboInOwl:hasDefinition "Name of an entry (gene) from the KEGG GENES database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2105 a owl:Class ;
+ rdfs:label "Compound ID (BioCyc)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a compound from the BioCyc chemical compounds database." ;
+ oboInOwl:hasExactSynonym "BioCyc compound ID",
+ "BioCyc compound identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2104,
+ :data_2894 .
+
+:data_2106 a owl:Class ;
+ rdfs:label "Reaction ID (BioCyc)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a biological reaction from the BioCyc reactions database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2104,
+ :data_2108 .
+
+:data_2107 a owl:Class ;
+ rdfs:label "Enzyme ID (BioCyc)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an enzyme from the BioCyc enzymes database." ;
+ oboInOwl:hasExactSynonym "BioCyc enzyme ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2104,
+ :data_2321 .
+
+:data_2112 a owl:Class ;
+ rdfs:label "FlyBase primary identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Primary identifier of an object from the FlyBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1089 .
+
+:data_2114 a owl:Class ;
+ rdfs:label "WormBase wormpep ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "CE[0-9]{5}" ;
+ oboInOwl:hasDefinition "Protein identifier used by WormBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2113,
+ :data_2907 .
+
+:data_2116 a owl:Class ;
+ rdfs:label "Nucleic acid features (codon)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "An informative report on a trinucleotide sequence that encodes an amino acid including the triplet sequence, the encoded amino acid or whether it is a start or stop codon." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2126 a owl:Class ;
+ rdfs:label "Translation frame specification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.20" ;
+ :oldParent :data_2534 ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Frame for translation of DNA (3 forward and 3 reverse frames relative to a chromosome)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2128 a owl:Class ;
+ rdfs:label "Genetic code name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Informal name for a genetic code, typically an organism name." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2127 .
+
+:data_2130 a owl:Class ;
+ rdfs:label "Sequence profile type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing a type of sequence profile such as frequency matrix, Gribskov profile, hidden Markov model etc." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2131 a owl:Class ;
+ rdfs:label "Operating system name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a computer operating system such as Linux, PC or Mac." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_2132 a owl:Class ;
+ rdfs:label "Mutation type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2538 ;
+ oboInOwl:hasDefinition "A type of point or block mutation, including insertion, deletion, change, duplication and moves." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2133 a owl:Class ;
+ rdfs:label "Logical operator" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A logical operator such as OR, AND, XOR, and NOT." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_2134 a owl:Class ;
+ rdfs:label "Results sort order" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "A control of the order of data that is output, for example the order of sequences in an alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Possible options including sorting by score, rank, by increasing P-value (probability, i.e. most statistically significant hits given first) and so on." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2135 a owl:Class ;
+ rdfs:label "Toggle" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "A simple parameter that is a toggle (boolean value), typically a control for a modal tool." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2136 a owl:Class ;
+ rdfs:label "Sequence width" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "The width of an output sequence or alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2140 a owl:Class ;
+ rdfs:label "Concentration" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The concentration of a chemical compound." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2050 .
+
+:data_2141 a owl:Class ;
+ rdfs:label "Window step size" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1249 ;
+ oboInOwl:hasDefinition "Size of the incremental 'step' a sequence window is moved over a sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2142 a owl:Class ;
+ rdfs:label "EMBOSS graph" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2968 ;
+ oboInOwl:hasDefinition "An image of a graph generated by the EMBOSS suite." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2143 a owl:Class ;
+ rdfs:label "EMBOSS report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "An application report generated by the EMBOSS suite." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2145 a owl:Class ;
+ rdfs:label "Sequence offset" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "An offset for a single-point sequence position." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2146 a owl:Class ;
+ rdfs:label "Threshold" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1772 ;
+ oboInOwl:hasDefinition "A value that serves as a threshold for a tool (usually to control scoring or output)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2147 a owl:Class ;
+ rdfs:label "Protein report (transcription factor)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "An informative report on a transcription factor protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This might include conformational or physicochemical properties, as well as sequence information for transcription factor(s) binding sites." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2149 a owl:Class ;
+ rdfs:label "Database category name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "The name of a category of biological or bioinformatics database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2150 a owl:Class ;
+ rdfs:label "Sequence profile name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1115 ;
+ oboInOwl:hasDefinition "Name of a sequence profile." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2151 a owl:Class ;
+ rdfs:label "Color" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Specification of one or more colors." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2152 a owl:Class ;
+ rdfs:label "Rendering parameter" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "A parameter that is used to control rendering (drawing) to a device or image." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2156 a owl:Class ;
+ rdfs:label "Date" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "A temporal date." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2157 a owl:Class ;
+ rdfs:label "Word composition" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1266,
+ :data_1268 ;
+ oboInOwl:hasDefinition "Word composition data for a molecular sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2160 a owl:Class ;
+ rdfs:label "Fickett testcode plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot of Fickett testcode statistic (identifying protein coding regions) in a nucleotide sequences." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2884 .
+
+:data_2163 a owl:Class ;
+ rdfs:label "Helical net" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An image of peptide sequence sequence in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Useful for highlighting amphipathicity and other properties." ;
+ rdfs:subClassOf :data_1709 .
+
+:data_2164 a owl:Class ;
+ rdfs:label "Protein sequence properties plot" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0897 ;
+ oboInOwl:hasDefinition "A plot of general physicochemical properties of a protein sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2165 a owl:Class ;
+ rdfs:label "Protein ionisation curve" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot of pK versus pH for a protein." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897,
+ :data_2884 .
+
+:data_2166 a owl:Class ;
+ rdfs:label "Sequence composition plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A plot of character or word composition / frequency of a molecular sequence." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1261,
+ :data_2884 .
+
+:data_2167 a owl:Class ;
+ rdfs:label "Nucleic acid density plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Density plot (of base composition) for a nucleotide sequence." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1261,
+ :data_2884 .
+
+:data_2168 a owl:Class ;
+ rdfs:label "Sequence trace image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Image of a sequence trace (nucleotide sequence versus probabilities of each of the 4 bases)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2969 .
+
+:data_2169 a owl:Class ;
+ rdfs:label "Nucleic acid features (siRNA)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "A report on siRNA duplexes in mRNA." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2173 a owl:Class ;
+ rdfs:label "Sequence set (stream)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "A collection of multiple molecular sequences and (typically) associated metadata that is intended for sequential processing." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This concept may be used for sequence sets that are expected to be read and processed a single sequence at a time." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2174 a owl:Class ;
+ rdfs:label "FlyBase secondary identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Secondary identifier of an object from the FlyBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Secondary identifier are used to handle entries that were merged with or split from other entries in the database." ;
+ rdfs:subClassOf :data_1089 .
+
+:data_2176 a owl:Class ;
+ rdfs:label "Cardinality" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "The number of a certain thing." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2177 a owl:Class ;
+ rdfs:label "Exactly 1" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "A single thing." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2178 a owl:Class ;
+ rdfs:label "1 or more" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "One or more things." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2179 a owl:Class ;
+ rdfs:label "Exactly 2" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "Exactly two things." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2180 a owl:Class ;
+ rdfs:label "2 or more" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2337 ;
+ oboInOwl:hasDefinition "Two or more things." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2191 a owl:Class ;
+ rdfs:label "Protein features report (chemical modifications)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "chemical modification of a protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2192 a owl:Class ;
+ rdfs:label "Error" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "Data on an error generated by computer system or tool." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2193 a owl:Class ;
+ rdfs:label "Database entry metadata" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Basic information on any arbitrary database entry." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2337 .
+
+:data_2198 a owl:Class ;
+ rdfs:label "Gene cluster" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1246 ;
+ oboInOwl:hasDefinition "A cluster of similar genes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2201 a owl:Class ;
+ rdfs:label "Sequence record full" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A molecular sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2208 a owl:Class ;
+ rdfs:label "Plasmid identifier" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "An identifier of a plasmid in a database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2119 .
+
+:data_2209 a owl:Class ;
+ rdfs:label "Mutation ID" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "A unique identifier of a specific mutation catalogued in a database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2538 .
+
+:data_2212 a owl:Class ;
+ rdfs:label "Mutation annotation (basic)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "Information describing the mutation itself, the organ site, tissue and type of lesion where the mutation has been identified, description of the patient origin and life-style." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2213 a owl:Class ;
+ rdfs:label "Mutation annotation (prevalence)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "An informative report on the prevalence of mutation(s), including data on samples and mutation prevalence (e.g. by tumour type).." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2214 a owl:Class ;
+ rdfs:label "Mutation annotation (prognostic)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "An informative report on mutation prognostic data, such as information on patient cohort, the study settings and the results of the study." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2215 a owl:Class ;
+ rdfs:label "Mutation annotation (functional)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "An informative report on the functional properties of mutant proteins including transcriptional activities, promotion of cell growth and tumorigenicity, dominant negative effects, capacity to induce apoptosis, cell-cycle arrest or checkpoints in human cells and so on." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2216 a owl:Class ;
+ rdfs:label "Codon number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The number of a codon, for instance, at which a mutation is located." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1016 .
+
+:data_2217 a owl:Class ;
+ rdfs:label "Tumor annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_1622 ;
+ oboInOwl:hasDefinition "An informative report on a specific tumor including nature and origin of the sample, anatomic site, organ or tissue, tumor type, including morphology and/or histologic type, and so on." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2218 a owl:Class ;
+ rdfs:label "Server metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3106 ;
+ oboInOwl:hasDefinition "Basic information about a server on the web, such as an SRS server." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2219 a owl:Class ;
+ rdfs:label "Database field name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a field in a database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_2220 a owl:Class ;
+ rdfs:label "Sequence cluster ID (SYSTERS)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a sequence cluster from the SYSTERS database." ;
+ oboInOwl:hasExactSynonym "SYSTERS cluster ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1112,
+ :data_2091 .
+
+:data_2223 a owl:Class ;
+ rdfs:label "Ontology metadata" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Data concerning a biological ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_0089 ],
+ :data_2337 .
+
+:data_2235 a owl:Class ;
+ rdfs:label "Raw SCOP domain classification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Raw SCOP domain classification data files." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "These are the parsable data files provided by SCOP." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2236 a owl:Class ;
+ rdfs:label "Raw CATH domain classification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Raw CATH domain classification data files." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "These are the parsable data files provided by CATH." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2240 a owl:Class ;
+ rdfs:label "Heterogen annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report on the types of small molecules or 'heterogens' (non-protein groups) that are represented in PDB files." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2242 a owl:Class ;
+ rdfs:label "Phylogenetic property values" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0871 ;
+ oboInOwl:hasDefinition "Phylogenetic property values data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2245 a owl:Class ;
+ rdfs:label "Sequence set (bootstrapped)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0850 ;
+ oboInOwl:hasDefinition "A collection of sequences output from a bootstrapping (resampling) procedure." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Bootstrapping is often performed in phylogenetic analysis." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2247 a owl:Class ;
+ rdfs:label "Phylogenetic consensus tree" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0872 ;
+ oboInOwl:hasDefinition "A consensus phylogenetic tree derived from comparison of multiple trees." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2248 a owl:Class ;
+ rdfs:label "Schema" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "A data schema for organising or transforming data of some type." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2249 a owl:Class ;
+ rdfs:label "DTD" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "A DTD (document type definition)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2250 a owl:Class ;
+ rdfs:label "XML Schema" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "An XML Schema." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2251 a owl:Class ;
+ rdfs:label "Relax-NG schema" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "A relax-NG schema." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2252 a owl:Class ;
+ rdfs:label "XSLT stylesheet" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "An XSLT stylesheet." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2254 a owl:Class ;
+ rdfs:label "OBO file format name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of an OBO file format such as OBO-XML, plain and so on." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2129 .
+
+:data_2288 a owl:Class ;
+ rdfs:label "Sequence identifier (protein)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1096 ;
+ oboInOwl:hasDefinition "An identifier of protein sequence(s) or protein sequence database entries." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2289 a owl:Class ;
+ rdfs:label "Sequence identifier (nucleic acid)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1097 ;
+ oboInOwl:hasDefinition "An identifier of nucleotide sequence(s) or nucleotide sequence database entries." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2290 a owl:Class ;
+ rdfs:label "EMBL accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An accession number of an entry from the EMBL sequence database." ;
+ oboInOwl:hasExactSynonym "EMBL ID",
+ "EMBL accession number",
+ "EMBL identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1103 .
+
+:data_2291 a owl:Class ;
+ rdfs:label "UniProt ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a polypeptide in the UniProt database." ;
+ oboInOwl:hasExactSynonym "UniProt entry name",
+ "UniProt identifier",
+ "UniProtKB entry name",
+ "UniProtKB identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_0849 ],
+ :data_2154 .
+
+:data_2293 a owl:Class ;
+ rdfs:label "Gramene secondary identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Secondary (internal) identifier of a Gramene database entry." ;
+ oboInOwl:hasExactSynonym "Gramene internal ID",
+ "Gramene internal identifier",
+ "Gramene secondary ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2915 .
+
+:data_2296 a owl:Class ;
+ rdfs:label "Gene name (AceView)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Name of an entry (gene) from the AceView genes database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2297 a owl:Class ;
+ rdfs:label "Gene ID (ECK)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDbXref "http://www.geneontology.org/doc/GO.xrf_abbs: ECK" ;
+ oboInOwl:hasDefinition "Identifier of an E. coli K-12 gene from EcoGene Database." ;
+ oboInOwl:hasExactSynonym "E. coli K-12 gene identifier",
+ "ECK accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1795 .
+
+:data_2298 a owl:Class ;
+ rdfs:label "Gene ID (HGNC)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier for a gene approved by the HUGO Gene Nomenclature Committee." ;
+ oboInOwl:hasExactSynonym "HGNC ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2300 a owl:Class ;
+ rdfs:label "Gene name (NCBI)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Name of an entry (gene) from the NCBI genes database." ;
+ oboInOwl:hasExactSynonym "NCBI gene name" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2302 a owl:Class ;
+ rdfs:label "STRING ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the STRING database of protein-protein interactions." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2307 a owl:Class ;
+ rdfs:label "Virus annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2530 ;
+ oboInOwl:hasDefinition "An informative report on a specific virus." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2308 a owl:Class ;
+ rdfs:label "Virus annotation (taxonomy)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2530 ;
+ oboInOwl:hasDefinition "An informative report on the taxonomy of a specific virus." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2315 a owl:Class ;
+ rdfs:label "NCBI version" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier assigned to sequence records processed by NCBI, made of the accession number of the database record followed by a dot and a version number." ;
+ oboInOwl:hasExactSynonym "NCBI accession.version",
+ "accession.version" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Nucleotide sequence version contains two letters followed by six digits, a dot, and a version number (or for older nucleotide sequence records, the format is one letter followed by five digits, a dot, and a version number). Protein sequence version contains three letters followed by five digits, a dot, and a version number." ;
+ rdfs:subClassOf :data_2091,
+ :data_2362 .
+
+:data_2317 a owl:Class ;
+ rdfs:label "Cell line name (exact)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a cell line." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2316 .
+
+:data_2318 a owl:Class ;
+ rdfs:label "Cell line name (truncated)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a cell line." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2316 .
+
+:data_2319 a owl:Class ;
+ rdfs:label "Cell line name (no punctuation)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a cell line." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2316 .
+
+:data_2320 a owl:Class ;
+ rdfs:label "Cell line name (assonant)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a cell line." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2316 .
+
+:data_2325 a owl:Class ;
+ rdfs:label "REBASE enzyme number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an enzyme from the REBASE enzymes database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2321 .
+
+:data_2326 a owl:Class ;
+ rdfs:label "DrugBank ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "DB[0-9]{5}" ;
+ oboInOwl:hasDefinition "Unique identifier of a drug from the DrugBank database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2895 .
+
+:data_2327 a owl:Class ;
+ rdfs:label "GI number (protein)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier assigned to NCBI protein sequence records." ;
+ oboInOwl:hasExactSynonym "protein gi",
+ "protein gi number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Nucleotide sequence GI number is shown in the VERSION field of the database record. Protein sequence GI number is shown in the CDS/db_xref field of a nucleotide database record, and the VERSION field of a protein database record." ;
+ rdfs:subClassOf :data_2314 .
+
+:data_2335 a owl:Class ;
+ rdfs:label "Bit score" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A score derived from the alignment of two sequences, which is then normalised with respect to the scoring system." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Bit scores are normalised with respect to the scoring system and therefore can be used to compare alignment scores from different searches." ;
+ rdfs:subClassOf :data_1413 .
+
+:data_2336 a owl:Class ;
+ rdfs:label "Translation phase specification" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.20" ;
+ :oldParent :data_2534 ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Phase for translation of DNA (0, 1 or 2) relative to a fragment of the coding sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2340 a owl:Class ;
+ rdfs:label "Genome build identifier" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a build of a particular genome." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2749 .
+
+:data_2342 a owl:Class ;
+ rdfs:label "Pathway or network name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a biological pathway or network." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1082 .
+
+:data_2343 a owl:Class ;
+ rdfs:label "Pathway ID (KEGG)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[a-zA-Z_0-9]{2,3}[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the KEGG pathway database." ;
+ oboInOwl:hasExactSynonym "KEGG pathway ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2091,
+ :data_2365 .
+
+:data_2344 a owl:Class ;
+ rdfs:label "Pathway ID (NCI-Nature)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[a-zA-Z_0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the NCI-Nature pathway database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_2345 a owl:Class ;
+ rdfs:label "Pathway ID (ConsensusPathDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the ConsensusPathDB pathway database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365,
+ :data_2917 .
+
+:data_2347 a owl:Class ;
+ rdfs:label "Sequence cluster ID (UniRef100)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the UniRef100 database." ;
+ oboInOwl:hasExactSynonym "UniRef100 cluster id",
+ "UniRef100 entry accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2346 .
+
+:data_2348 a owl:Class ;
+ rdfs:label "Sequence cluster ID (UniRef90)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the UniRef90 database." ;
+ oboInOwl:hasExactSynonym "UniRef90 cluster id",
+ "UniRef90 entry accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2346 .
+
+:data_2349 a owl:Class ;
+ rdfs:label "Sequence cluster ID (UniRef50)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the UniRef50 database." ;
+ oboInOwl:hasExactSynonym "UniRef50 cluster id",
+ "UniRef50 entry accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2346 .
+
+:data_2356 a owl:Class ;
+ rdfs:label "RFAM accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Stable accession number of an entry (RNA family) from the RFAM database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2355 .
+
+:data_2357 a owl:Class ;
+ rdfs:label "Protein signature type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing a type of protein family signature (sequence classifier) from the InterPro database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2358 a owl:Class ;
+ rdfs:label "Domain-nucleic acid interaction report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0906 ;
+ oboInOwl:hasDefinition "An informative report on protein domain-DNA/RNA interaction(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2359 a owl:Class ;
+ rdfs:label "Domain-domain interactions" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:consider :data_0906 ;
+ oboInOwl:hasDefinition "An informative report on protein domain-protein domain interaction(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2360 a owl:Class ;
+ rdfs:label "Domain-domain interaction (indirect)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0906 ;
+ oboInOwl:hasDefinition "Data on indirect protein domain-protein domain interaction(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2363 a owl:Class ;
+ rdfs:label "2D PAGE data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:hasDefinition "Data concerning two-dimensional polygel electrophoresis." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. It is primarily intended to help navigation of EDAM and would not typically be used for annotation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2364 a owl:Class ;
+ rdfs:label "2D PAGE report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "two-dimensional gel electrophoresis experiments, gels or spots in a gel." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2368 a owl:Class ;
+ rdfs:label "ASTD ID (exon)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an exon from the ASTD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2367 .
+
+:data_2369 a owl:Class ;
+ rdfs:label "ASTD ID (intron)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an intron from the ASTD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2367 .
+
+:data_2370 a owl:Class ;
+ rdfs:label "ASTD ID (polya)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a polyA signal from the ASTD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2367 .
+
+:data_2371 a owl:Class ;
+ rdfs:label "ASTD ID (tss)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a transcription start site from the ASTD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2367 .
+
+:data_2372 a owl:Class ;
+ rdfs:label "2D PAGE spot report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "An informative report on individual spot(s) from a two-dimensional (2D PAGE) gel." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2374 a owl:Class ;
+ rdfs:label "Spot serial number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a spot from a two-dimensional (protein) gel in the SWISS-2DPAGE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2373 .
+
+:data_2375 a owl:Class ;
+ rdfs:label "Spot ID (HSC-2DPAGE)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a spot from a two-dimensional (protein) gel from a HSC-2DPAGE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2373 .
+
+:data_2378 a owl:Class ;
+ rdfs:label "Protein-motif interaction" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0906 ;
+ oboInOwl:hasDefinition "Data on the interaction of a protein (or protein domain) with specific structural (3D) and/or sequence motifs." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2380 a owl:Class ;
+ rdfs:label "CABRI accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of an item from the CABRI database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109 .
+
+:data_2381 a owl:Class ;
+ rdfs:label "Experiment report (genotyping)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report of genotype experiment including case control, population, and family studies. These might use array based methods and re-sequencing methods." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2383 a owl:Class ;
+ rdfs:label "EGA accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the EGA database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2382 .
+
+:data_2384 a owl:Class ;
+ rdfs:label "IPI protein ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "IPI[0-9]{8}" ;
+ oboInOwl:hasDefinition "Identifier of a protein entry catalogued in the International Protein Index (IPI) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1096,
+ :data_2091 .
+
+:data_2385 a owl:Class ;
+ rdfs:label "RefSeq accession (protein)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of a protein from the RefSeq database." ;
+ oboInOwl:hasExactSynonym "RefSeq protein ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1098 .
+
+:data_2386 a owl:Class ;
+ rdfs:label "EPD ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry (promoter) from the EPD database." ;
+ oboInOwl:hasExactSynonym "EPD identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2727 .
+
+:data_2388 a owl:Class ;
+ rdfs:label "TAIR accession (At gene)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an Arabidopsis thaliana gene from the TAIR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1037 .
+
+:data_2389 a owl:Class ;
+ rdfs:label "UniSTS accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the UniSTS database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1097,
+ :data_2091 .
+
+:data_2390 a owl:Class ;
+ rdfs:label "UNITE accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the UNITE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1097,
+ :data_2091 .
+
+:data_2391 a owl:Class ;
+ rdfs:label "UTR accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the UTR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1097,
+ :data_2091 .
+
+:data_2392 a owl:Class ;
+ rdfs:label "UniParc accession" ;
+ :created_in "beta12orEarlier" ;
+ :regex "UPI[A-F0-9]{10}" ;
+ oboInOwl:hasDefinition "Accession number of a UniParc (protein sequence) database entry." ;
+ oboInOwl:hasExactSynonym "UPI",
+ "UniParc ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1096,
+ :data_2091 .
+
+:data_2393 a owl:Class ;
+ rdfs:label "mFLJ/mKIAA number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the Rouge or HUGE databases." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2395 a owl:Class ;
+ rdfs:label "Fungi annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2530 ;
+ oboInOwl:hasDefinition "An informative report on a specific fungus." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2396 a owl:Class ;
+ rdfs:label "Fungi annotation (anamorph)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2530 ;
+ oboInOwl:hasDefinition "An informative report on a specific fungus anamorph." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2398 a owl:Class ;
+ rdfs:label "Ensembl protein ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a protein from the Ensembl database." ;
+ oboInOwl:hasExactSynonym "Ensembl ID (protein)",
+ "Protein ID (Ensembl)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2610,
+ :data_2907 .
+
+:data_2400 a owl:Class ;
+ rdfs:label "Toxin annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report on a specific toxin." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2401 a owl:Class ;
+ rdfs:label "Protein report (membrane protein)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1277 ;
+ oboInOwl:hasDefinition "An informative report on a membrane protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2402 a owl:Class ;
+ rdfs:label "Protein-drug interaction report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:hasDefinition "An informative report on tentative or known protein-drug interaction(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1566 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2522 a owl:Class ;
+ rdfs:label "Map data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1274,
+ :data_2019 ;
+ oboInOwl:hasDefinition "Data concerning a map of molecular sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2524 a owl:Class ;
+ rdfs:label "Protein data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0896 ;
+ oboInOwl:hasDefinition "Data concerning one or more protein molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2525 a owl:Class ;
+ rdfs:label "Nucleic acid data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2084 ;
+ oboInOwl:hasDefinition "Data concerning one or more nucleic acid molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2527 a owl:Class ;
+ rdfs:label "Parameter" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.16" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Typically a simple numerical or string value that controls the operation of a tool." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2528 a owl:Class ;
+ rdfs:label "Molecular data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2087 ;
+ oboInOwl:hasDefinition "Data concerning a specific type of molecule." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2529 a owl:Class ;
+ rdfs:label "Molecule report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0896,
+ :data_2084 ;
+ oboInOwl:hasDefinition "An informative report on a specific molecule." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2539 a owl:Class ;
+ rdfs:label "Alignment data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1916,
+ :data_2083 ;
+ oboInOwl:hasDefinition "Data concerning an alignment of two or more molecular sequences, structures or derived data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types. This includes entities derived from sequences and structures such as motifs and profiles." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2540 a owl:Class ;
+ rdfs:label "Data index data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0955 ;
+ oboInOwl:hasDefinition "Data concerning an index of data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2563 a owl:Class ;
+ rdfs:label "Amino acid name (single letter)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Single letter amino acid identifier, e.g. G." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1006 .
+
+:data_2565 a owl:Class ;
+ rdfs:label "Amino acid name (full name)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Full name of an amino acid, e.g. Glycine." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1006 .
+
+:data_2578 a owl:Class ;
+ rdfs:label "ArachnoServer ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a toxin from the ArachnoServer database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2897 .
+
+:data_2579 a owl:Class ;
+ rdfs:label "Expressed gene list" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2872 ;
+ oboInOwl:hasDefinition "A simple summary of expressed genes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2580 a owl:Class ;
+ rdfs:label "BindingDB Monomer ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a monomer from the BindingDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_2581 a owl:Class ;
+ rdfs:label "GO concept name" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2339 ;
+ oboInOwl:hasDefinition "The name of a concept from the GO ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2582 a owl:Class ;
+ rdfs:label "GO concept ID (biological process)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{7}|GO:[0-9]{7}" ;
+ oboInOwl:hasDefinition "An identifier of a 'biological process' concept from the the Gene Ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1176 .
+
+:data_2583 a owl:Class ;
+ rdfs:label "GO concept ID (molecular function)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{7}|GO:[0-9]{7}" ;
+ oboInOwl:hasDefinition "An identifier of a 'molecular function' concept from the the Gene Ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1176 .
+
+:data_2584 a owl:Class ;
+ rdfs:label "GO concept name (cellular component)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2339 ;
+ oboInOwl:hasDefinition "The name of a concept for a cellular component from the GO ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2586 a owl:Class ;
+ rdfs:label "Northern blot image" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An image arising from a Northern Blot experiment." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3424 .
+
+:data_2588 a owl:Class ;
+ rdfs:label "BlotBase blot ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a blot from a Northern Blot from the BlotBase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2587 .
+
+:data_2589 a owl:Class ;
+ rdfs:label "Hierarchy" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Raw data on a biological hierarchy, describing the hierarchy proper, hierarchy components and possibly associated annotation." ;
+ oboInOwl:hasExactSynonym "Hierarchy annotation" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0006 .
+
+:data_2590 a owl:Class ;
+ rdfs:label "Hierarchy identifier" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2891 ;
+ oboInOwl:hasDefinition "Identifier of an entry from a database of biological hierarchies." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2591 a owl:Class ;
+ rdfs:label "Brite hierarchy ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the Brite database of biological hierarchies." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2891 .
+
+:data_2592 a owl:Class ;
+ rdfs:label "Cancer type" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2099 ;
+ oboInOwl:hasDefinition "A type (represented as a string) of cancer." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2593 a owl:Class ;
+ rdfs:label "BRENDA organism ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier for an organism used in the BRENDA database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2908 .
+
+:data_2594 a owl:Class ;
+ rdfs:label "UniGene taxon" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a taxon using the controlled vocabulary of the UniGene database." ;
+ oboInOwl:hasExactSynonym "UniGene organism abbreviation" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1868 .
+
+:data_2595 a owl:Class ;
+ rdfs:label "UTRdb taxon" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a taxon using the controlled vocabulary of the UTRdb database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1868 .
+
+:data_2597 a owl:Class ;
+ rdfs:label "CABRI catalogue name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a catalogue of biological resources from the CABRI database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2596 .
+
+:data_2598 a owl:Class ;
+ rdfs:label "Secondary structure alignment metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0867 ;
+ oboInOwl:hasDefinition "An informative report on protein secondary structure alignment-derived data or metadata." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2599 a owl:Class ;
+ rdfs:label "Molecule interaction report" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "Was deprecated since 1.5, but not correctly (fully) obsoleted until 1.19." ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0906 ;
+ oboInOwl:hasDefinition "An informative report on the physical, chemical or other information concerning the interaction of two or more molecules (or parts of molecules)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2601 a owl:Class ;
+ rdfs:label "Small molecule data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "Data concerning one or more small molecules." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2602 a owl:Class ;
+ rdfs:label "Genotype and phenotype data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0920 ;
+ oboInOwl:hasDefinition "Data concerning a particular genotype, phenotype or a genotype / phenotype relation." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2605 a owl:Class ;
+ rdfs:label "Compound ID (KEGG)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "C[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of a chemical compound from the KEGG database." ;
+ oboInOwl:hasExactSynonym "KEGG compound ID",
+ "KEGG compound identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2894 .
+
+:data_2606 a owl:Class ;
+ rdfs:label "RFAM name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name (not necessarily stable) an entry (RNA family) from the RFAM database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2355 .
+
+:data_2608 a owl:Class ;
+ rdfs:label "Reaction ID (KEGG)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "R[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a biological reaction from the KEGG reactions database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2108 .
+
+:data_2609 a owl:Class ;
+ rdfs:label "Drug ID (KEGG)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "D[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of a drug from the KEGG Drug database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2091,
+ :data_2895 .
+
+:data_2611 a owl:Class ;
+ rdfs:label "ICD identifier" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[A-Z][0-9]+(\\.[-[0-9]+])?" ;
+ oboInOwl:hasDefinition "An identifier of a disease from the International Classification of Diseases (ICD) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1622 ],
+ :data_1150,
+ :data_2091 .
+
+:data_2612 a owl:Class ;
+ rdfs:label "Sequence cluster ID (CluSTr)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9A-Za-z]+:[0-9]+:[0-9]{1,5}(\\.[0-9])?" ;
+ oboInOwl:hasDefinition "Unique identifier of a sequence cluster from the CluSTr database." ;
+ oboInOwl:hasExactSynonym "CluSTr ID",
+ "CluSTr cluster ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1112,
+ :data_2091 .
+
+:data_2613 a owl:Class ;
+ rdfs:label "KEGG Glycan ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "G[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of a glycan ligand from the KEGG GLYCAN database (a subset of KEGG LIGAND)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1154,
+ :data_2091,
+ :data_2900 .
+
+:data_2614 a owl:Class ;
+ rdfs:label "TCDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+\\.[A-Z]\\.[0-9]+\\.[0-9]+\\.[0-9]+" ;
+ oboInOwl:hasDefinition "A unique identifier of a family from the transport classification database (TCDB) of membrane transport proteins." ;
+ oboInOwl:hasExactSynonym "TC number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "OBO file for regular expression." ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_2615 a owl:Class ;
+ rdfs:label "MINT ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "MINT\\-[0-9]{1,5}" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the MINT database of protein-protein interactions." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2616 a owl:Class ;
+ rdfs:label "DIP ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "DIP[\\:\\-][0-9]{3}[EN]" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the DIP database of protein-protein interactions." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2617 a owl:Class ;
+ rdfs:label "Signaling Gateway protein ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "A[0-9]{6}" ;
+ oboInOwl:hasDefinition "Unique identifier of a protein listed in the UCSD-Nature Signaling Gateway Molecule Pages database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2619 a owl:Class ;
+ rdfs:label "RESID ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "AA[0-9]{4}" ;
+ oboInOwl:hasDefinition "Identifier of a protein modification catalogued in the RESID database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2618 .
+
+:data_2620 a owl:Class ;
+ rdfs:label "RGD ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{4,7}" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the RGD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109 .
+
+:data_2621 a owl:Class ;
+ rdfs:label "TAIR accession (protein)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "AASequence:[0-9]{10}" ;
+ oboInOwl:hasDefinition "Identifier of a protein sequence from the TAIR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1096,
+ :data_2387 .
+
+:data_2622 a owl:Class ;
+ rdfs:label "Compound ID (HMDB)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "HMDB[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a small molecule metabolite from the Human Metabolome Database (HMDB)." ;
+ oboInOwl:hasExactSynonym "HMDB ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_2625 a owl:Class ;
+ rdfs:label "LIPID MAPS ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4})?" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the LIPID MAPS database." ;
+ oboInOwl:hasExactSynonym "LM ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2905 .
+
+:data_2626 a owl:Class ;
+ rdfs:label "PeptideAtlas ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PAp[0-9]{8}" ;
+ oboInOwl:hasDbXref "PDBML:pdbx_PDB_strand_id" ;
+ oboInOwl:hasDefinition "Identifier of a peptide from the PeptideAtlas peptide databases." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2906 .
+
+:data_2627 a owl:Class ;
+ rdfs:label "Molecular interaction ID" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.7" ;
+ oboInOwl:hasDefinition "Identifier of a report of molecular interactions from a database (typically)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1074 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2628 a owl:Class ;
+ rdfs:label "BioGRID interaction ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "A unique identifier of an interaction from the BioGRID database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2629 a owl:Class ;
+ rdfs:label "Enzyme ID (MEROPS)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "S[0-9]{2}\\.[0-9]{3}" ;
+ oboInOwl:hasDefinition "Unique identifier of a peptidase enzyme from the MEROPS database." ;
+ oboInOwl:hasExactSynonym "MEROPS ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2321 .
+
+:data_2631 a owl:Class ;
+ rdfs:label "ACLAME ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "mge:[0-9]+" ;
+ oboInOwl:hasDefinition "An identifier of a mobile genetic element from the Aclame database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2630 .
+
+:data_2634 a owl:Class ;
+ rdfs:label "ISBN" ;
+ :created_in "beta12orEarlier" ;
+ :regex "(ISBN)?(-13|-10)?[:]?[ ]?([0-9]{2,3}[ -]?)?[0-9]{1,5}[ -]?[0-9]{1,7}[ -]?[0-9]{1,6}[ -]?([0-9]|X)" ;
+ oboInOwl:hasDefinition "The International Standard Book Number (ISBN) is for identifying printed books." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2633 .
+
+:data_2635 a owl:Class ;
+ rdfs:label "Compound ID (3DMET)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "B[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a metabolite from the 3DMET database." ;
+ oboInOwl:hasExactSynonym "3DMET ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_2636 a owl:Class ;
+ rdfs:label "MatrixDB interaction ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "([A-NR-Z][0-9][A-Z][A-Z0-9][A-Z0-9][0-9])_.*|([OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)" ;
+ oboInOwl:hasDefinition "A unique identifier of an interaction from the MatrixDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2637 a owl:Class ;
+ rdfs:label "cPath ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "A unique identifier for pathways, reactions, complexes and small molecules from the cPath (Pathway Commons) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "These identifiers are unique within the cPath database, however, they are not stable between releases." ;
+ rdfs:subClassOf :data_2091,
+ :data_2109,
+ :data_2365 .
+
+:data_2638 a owl:Class ;
+ rdfs:label "PubChem bioassay ID" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an assay from the PubChem database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0976,
+ :data_2639 .
+
+:data_2641 a owl:Class ;
+ rdfs:label "Reaction ID (MACie)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "M[0-9]{4}" ;
+ oboInOwl:hasDefinition "Identifier of an enzyme reaction mechanism from the MACie database." ;
+ oboInOwl:hasExactSynonym "MACie entry number" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2108 .
+
+:data_2642 a owl:Class ;
+ rdfs:label "Gene ID (miRBase)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "MI[0-9]{7}" ;
+ oboInOwl:hasDefinition "Identifier for a gene from the miRBase database." ;
+ oboInOwl:hasExactSynonym "miRNA ID",
+ "miRNA identifier",
+ "miRNA name" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2643 a owl:Class ;
+ rdfs:label "Gene ID (ZFIN)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "ZDB\\-GENE\\-[0-9]+\\-[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier for a gene from the Zebrafish information network genome (ZFIN) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2644 a owl:Class ;
+ rdfs:label "Reaction ID (Rhea)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of an enzyme-catalysed reaction from the Rhea database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2108 .
+
+:data_2645 a owl:Class ;
+ rdfs:label "Pathway ID (Unipathway)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "UPA[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a biological pathway from the Unipathway database." ;
+ oboInOwl:hasExactSynonym "upaid" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_2646 a owl:Class ;
+ rdfs:label "Compound ID (ChEMBL)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a small molecular from the ChEMBL database." ;
+ oboInOwl:hasExactSynonym "ChEMBL ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_2647 a owl:Class ;
+ rdfs:label "LGICdb identifier" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[a-zA-Z_0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the Ligand-gated ion channel (LGICdb) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2648 a owl:Class ;
+ rdfs:label "Reaction kinetics ID (SABIO-RK)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a biological reaction (kinetics entry) from the SABIO-RK reactions database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2309 .
+
+:data_2650 a owl:Class ;
+ rdfs:label "Pathway ID (PharmGKB)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PA[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365,
+ :data_2649 .
+
+:data_2651 a owl:Class ;
+ rdfs:label "Disease ID (PharmGKB)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PA[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a disease from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1150,
+ :data_2091,
+ :data_2649 .
+
+:data_2652 a owl:Class ;
+ rdfs:label "Drug ID (PharmGKB)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PA[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a drug from the pharmacogenetics and pharmacogenomics knowledge base (PharmGKB)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2649,
+ :data_2895 .
+
+:data_2653 a owl:Class ;
+ rdfs:label "Drug ID (TTD)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "DAP[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a drug from the Therapeutic Target Database (TTD)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2895 .
+
+:data_2654 a owl:Class ;
+ rdfs:label "Target ID (TTD)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "TTDS[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a target protein from the Therapeutic Target Database (TTD)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2656 a owl:Class ;
+ rdfs:label "NeuronDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "A unique identifier of a neuron from the NeuronDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2893 .
+
+:data_2657 a owl:Class ;
+ rdfs:label "NeuroMorpho ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[a-zA-Z_0-9]+" ;
+ oboInOwl:hasDefinition "A unique identifier of a neuron from the NeuroMorpho database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2893 .
+
+:data_2658 a owl:Class ;
+ rdfs:label "Compound ID (ChemIDplus)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a chemical from the ChemIDplus database." ;
+ oboInOwl:hasExactSynonym "ChemIDplus ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2894 .
+
+:data_2659 a owl:Class ;
+ rdfs:label "Pathway ID (SMPDB)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "SMP[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the Small Molecule Pathway Database (SMPDB)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_2660 a owl:Class ;
+ rdfs:label "BioNumbers ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the BioNumbers database of key numbers and associated data in molecular biology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091 .
+
+:data_2662 a owl:Class ;
+ rdfs:label "T3DB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "T3D[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of a toxin from the Toxin and Toxin Target Database (T3DB) database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2897 .
+
+:data_2664 a owl:Class ;
+ rdfs:label "GlycomeDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the GlycomeDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2900 .
+
+:data_2665 a owl:Class ;
+ rdfs:label "LipidBank ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[a-zA-Z_0-9]+[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the LipidBank database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2905 .
+
+:data_2666 a owl:Class ;
+ rdfs:label "CDD ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "cd[0-9]{5}" ;
+ oboInOwl:hasDefinition "Identifier of a conserved domain from the Conserved Domain Database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1038,
+ :data_2091 .
+
+:data_2667 a owl:Class ;
+ rdfs:label "MMDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{1,5}" ;
+ oboInOwl:hasDefinition "An identifier of an entry from the MMDB database." ;
+ oboInOwl:hasExactSynonym "MMDB accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1070,
+ :data_2091 .
+
+:data_2668 a owl:Class ;
+ rdfs:label "iRefIndex ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the iRefIndex database of protein-protein interactions." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1074,
+ :data_2091 .
+
+:data_2669 a owl:Class ;
+ rdfs:label "ModelDB ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Unique identifier of an entry from the ModelDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2891 .
+
+:data_2670 a owl:Class ;
+ rdfs:label "Pathway ID (DQCS)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a signaling pathway from the Database of Quantitative Cellular Signaling (DQCS)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_2671 a owl:Class ;
+ rdfs:label "Ensembl ID (Homo sapiens)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENS([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database (Homo sapiens division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2672 a owl:Class ;
+ rdfs:label "Ensembl ID ('Bos taurus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSBTA([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Bos taurus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2673 a owl:Class ;
+ rdfs:label "Ensembl ID ('Canis familiaris')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSCAF([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Canis familiaris' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2674 a owl:Class ;
+ rdfs:label "Ensembl ID ('Cavia porcellus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSCPO([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Cavia porcellus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2675 a owl:Class ;
+ rdfs:label "Ensembl ID ('Ciona intestinalis')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSCIN([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona intestinalis' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2676 a owl:Class ;
+ rdfs:label "Ensembl ID ('Ciona savignyi')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSCSAV([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ciona savignyi' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2677 a owl:Class ;
+ rdfs:label "Ensembl ID ('Danio rerio')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSDAR([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Danio rerio' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2678 a owl:Class ;
+ rdfs:label "Ensembl ID ('Dasypus novemcinctus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSDNO([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Dasypus novemcinctus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2679 a owl:Class ;
+ rdfs:label "Ensembl ID ('Echinops telfairi')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSETE([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Echinops telfairi' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2680 a owl:Class ;
+ rdfs:label "Ensembl ID ('Erinaceus europaeus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSEEU([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Erinaceus europaeus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2681 a owl:Class ;
+ rdfs:label "Ensembl ID ('Felis catus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSFCA([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Felis catus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2682 a owl:Class ;
+ rdfs:label "Ensembl ID ('Gallus gallus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSGAL([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gallus gallus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2683 a owl:Class ;
+ rdfs:label "Ensembl ID ('Gasterosteus aculeatus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSGAC([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Gasterosteus aculeatus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2684 a owl:Class ;
+ rdfs:label "Ensembl ID ('Homo sapiens')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSHUM([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Homo sapiens' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2685 a owl:Class ;
+ rdfs:label "Ensembl ID ('Loxodonta africana')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSLAF([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Loxodonta africana' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2686 a owl:Class ;
+ rdfs:label "Ensembl ID ('Macaca mulatta')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSMMU([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Macaca mulatta' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2687 a owl:Class ;
+ rdfs:label "Ensembl ID ('Monodelphis domestica')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSMOD([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Monodelphis domestica' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2688 a owl:Class ;
+ rdfs:label "Ensembl ID ('Mus musculus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSMUS([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Mus musculus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2689 a owl:Class ;
+ rdfs:label "Ensembl ID ('Myotis lucifugus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSMLU([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Myotis lucifugus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2690 a owl:Class ;
+ rdfs:label "Ensembl ID (\"Ornithorhynchus anatinus\")" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSOAN([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Ornithorhynchus anatinus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2691 a owl:Class ;
+ rdfs:label "Ensembl ID ('Oryctolagus cuniculus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSOCU([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryctolagus cuniculus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2692 a owl:Class ;
+ rdfs:label "Ensembl ID ('Oryzias latipes')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSORL([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Oryzias latipes' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2693 a owl:Class ;
+ rdfs:label "Ensembl ID ('Otolemur garnettii')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSSAR([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Otolemur garnettii' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2694 a owl:Class ;
+ rdfs:label "Ensembl ID ('Pan troglodytes')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSPTR([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Pan troglodytes' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2695 a owl:Class ;
+ rdfs:label "Ensembl ID ('Rattus norvegicus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSRNO([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Rattus norvegicus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2696 a owl:Class ;
+ rdfs:label "Ensembl ID ('Spermophilus tridecemlineatus')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSSTO([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Spermophilus tridecemlineatus' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2697 a owl:Class ;
+ rdfs:label "Ensembl ID ('Takifugu rubripes')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSFRU([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Takifugu rubripes' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2698 a owl:Class ;
+ rdfs:label "Ensembl ID ('Tupaia belangeri')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSTBE([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Tupaia belangeri' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2699 a owl:Class ;
+ rdfs:label "Ensembl ID ('Xenopus tropicalis')" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ :regex "ENSXET([EGTP])[0-9]{11}" ;
+ oboInOwl:consider :data_2610 ;
+ oboInOwl:hasDefinition "Identifier of an entry (exon, gene, transcript or protein) from the Ensembl 'core' database ('Xenopus tropicalis' division)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2701 a owl:Class ;
+ rdfs:label "CATH node ID (family)" ;
+ :created_in "beta12orEarlier" ;
+ :example "2.10.10.10" ;
+ oboInOwl:hasDefinition "A code number identifying a family from the CATH database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1043 .
+
+:data_2702 a owl:Class ;
+ rdfs:label "Enzyme ID (CAZy)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an enzyme from the CAZy enzymes database." ;
+ oboInOwl:hasExactSynonym "CAZy ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2321 .
+
+:data_2704 a owl:Class ;
+ rdfs:label "Clone ID (IMAGE)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier assigned by the I.M.A.G.E. consortium to a clone (cloned molecular sequence)." ;
+ oboInOwl:hasExactSynonym "I.M.A.G.E. cloneID",
+ "IMAGE cloneID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1855,
+ :data_2091 .
+
+:data_2705 a owl:Class ;
+ rdfs:label "GO concept ID (cellular component)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]{7}|GO:[0-9]{7}" ;
+ oboInOwl:hasDefinition "An identifier of a 'cellular component' concept from the Gene Ontology." ;
+ oboInOwl:hasExactSynonym "GO concept identifier (cellular compartment)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1176 .
+
+:data_2706 a owl:Class ;
+ rdfs:label "Chromosome name (BioCyc)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a chromosome as used in the BioCyc database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0987 .
+
+:data_2709 a owl:Class ;
+ rdfs:label "CleanEx entry name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a gene expression profile from the CleanEx database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1080,
+ :data_2091 .
+
+:data_2710 a owl:Class ;
+ rdfs:label "CleanEx dataset code" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of (typically a list of) gene expression experiments catalogued in the CleanEx database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1078 .
+
+:data_2713 a owl:Class ;
+ rdfs:label "Protein ID (CORUM)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a protein complex from the CORUM database." ;
+ oboInOwl:hasExactSynonym "CORUM complex ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2714 a owl:Class ;
+ rdfs:label "CDD PSSM-ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a position-specific scoring matrix from the CDD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1115,
+ :data_2091 .
+
+:data_2715 a owl:Class ;
+ rdfs:label "Protein ID (CuticleDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a protein from the CuticleDB database." ;
+ oboInOwl:hasExactSynonym "CuticleDB ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2716 a owl:Class ;
+ rdfs:label "DBD ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a predicted transcription factor from the DBD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2911 .
+
+:data_2719 a owl:Class ;
+ rdfs:label "dbProbe ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an oligonucleotide probe from the dbProbe database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2718 .
+
+:data_2720 a owl:Class ;
+ rdfs:label "Dinucleotide property" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Physicochemical property data for one or more dinucleotides." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2088 .
+
+:data_2721 a owl:Class ;
+ rdfs:label "DiProDB ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an dinucleotide property from the DiProDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2718 .
+
+:data_2722 a owl:Class ;
+ rdfs:label "Protein features report (disordered structure)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "disordered structure in a protein." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2723 a owl:Class ;
+ rdfs:label "Protein ID (DisProt)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a protein from the DisProt database." ;
+ oboInOwl:hasExactSynonym "DisProt ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2724 a owl:Class ;
+ rdfs:label "Embryo report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1713 ;
+ oboInOwl:hasDefinition "Annotation on an embryo or concerning embryological development." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2725 a owl:Class ;
+ rdfs:label "Ensembl transcript ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a gene transcript from the Ensembl database." ;
+ oboInOwl:hasExactSynonym "Transcript ID (Ensembl)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2610,
+ :data_2769 .
+
+:data_2726 a owl:Class ;
+ rdfs:label "Inhibitor annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_0962 ;
+ oboInOwl:hasDefinition "An informative report on one or more small molecules that are enzyme inhibitors." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2729 a owl:Class ;
+ rdfs:label "COGEME EST ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an EST sequence from the COGEME database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2728 .
+
+:data_2730 a owl:Class ;
+ rdfs:label "COGEME unisequence ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a unisequence from the COGEME database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A unisequence is a single sequence assembled from ESTs." ;
+ rdfs:subClassOf :data_2091,
+ :data_2728 .
+
+:data_2731 a owl:Class ;
+ rdfs:label "Protein family ID (GeneFarm)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry (family) from the TIGRFam database." ;
+ oboInOwl:hasExactSynonym "GeneFarm family ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_2733 a owl:Class ;
+ rdfs:label "Genus name (virus)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1870 ;
+ oboInOwl:hasDefinition "The name of a genus of viruses." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2734 a owl:Class ;
+ rdfs:label "Family name (virus)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2732 ;
+ oboInOwl:hasDefinition "The name of a family of viruses." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2735 a owl:Class ;
+ rdfs:label "Database name (SwissRegulon)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "The name of a SwissRegulon database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2736 a owl:Class ;
+ rdfs:label "Sequence feature ID (SwissRegulon)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A feature identifier as used in the SwissRegulon database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This can be name of a gene, the ID of a TFBS, or genomic coordinates in form \"chr:start..end\"." ;
+ rdfs:subClassOf :data_1015,
+ :data_2091 .
+
+:data_2737 a owl:Class ;
+ rdfs:label "FIG ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene in the NMPDR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "A FIG ID consists of four parts: a prefix, genome id, locus type and id number." ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2738 a owl:Class ;
+ rdfs:label "Gene ID (Xenbase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene in the Xenbase database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2739 a owl:Class ;
+ rdfs:label "Gene ID (Genolist)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene in the Genolist database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2740 a owl:Class ;
+ rdfs:label "Gene name (Genolist)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.3" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Name of an entry (gene) from the Genolist genes database." ;
+ oboInOwl:hasExactSynonym "Genolist gene name" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2741 a owl:Class ;
+ rdfs:label "ABS ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry (promoter) from the ABS database." ;
+ oboInOwl:hasExactSynonym "ABS identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2727 .
+
+:data_2742 a owl:Class ;
+ rdfs:label "AraC-XylS ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a transcription factor from the AraC-XylS database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2911 .
+
+:data_2743 a owl:Class ;
+ rdfs:label "Gene name (HUGO)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1026 ;
+ oboInOwl:hasDefinition "Name of an entry (gene) from the HUGO database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2744 a owl:Class ;
+ rdfs:label "Locus ID (PseudoCAP)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a locus from the PseudoCAP database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_2745 a owl:Class ;
+ rdfs:label "Locus ID (UTR)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a locus from the UTR database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091 .
+
+:data_2746 a owl:Class ;
+ rdfs:label "MonosaccharideDB ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier of a monosaccharide from the MonosaccharideDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2898 .
+
+:data_2747 a owl:Class ;
+ rdfs:label "Database name (CMD)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "The name of a subdivision of the Collagen Mutation Database (CMD) database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2748 a owl:Class ;
+ rdfs:label "Database name (Osteogenesis)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0957 ;
+ oboInOwl:hasDefinition "The name of a subdivision of the Osteogenesis database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2751 a owl:Class ;
+ rdfs:label "GenomeReviews ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a particular genome." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2903 .
+
+:data_2752 a owl:Class ;
+ rdfs:label "GlycoMap ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the GlycosciencesDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2900 .
+
+:data_2753 a owl:Class ;
+ rdfs:label "Carbohydrate conformational map" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A conformational energy map of the glycosidic linkages in a carbohydrate molecule." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3425 .
+
+:data_2755 a owl:Class ;
+ rdfs:label "Transcription factor name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a transcription factor." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1009,
+ :data_1077 .
+
+:data_2756 a owl:Class ;
+ rdfs:label "TCID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a membrane transport proteins from the transport classification database (TCDB)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2757 a owl:Class ;
+ rdfs:label "Pfam domain name" ;
+ :created_in "beta12orEarlier" ;
+ :regex "PF[0-9]{5}" ;
+ oboInOwl:hasDefinition "Name of a domain from the Pfam database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1131 .
+
+:data_2758 a owl:Class ;
+ rdfs:label "Pfam clan ID" ;
+ :created_in "beta12orEarlier" ;
+ :regex "CL[0-9]{4}" ;
+ oboInOwl:hasDefinition "Accession number of a Pfam clan." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_2759 a owl:Class ;
+ rdfs:label "Gene ID (VectorBase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier for a gene from the VectorBase database." ;
+ oboInOwl:hasExactSynonym "VectorBase ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2761 a owl:Class ;
+ rdfs:label "UTRSite ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the UTRSite database of regulatory motifs in eukaryotic UTRs." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1114 .
+
+:data_2763 a owl:Class ;
+ rdfs:label "Locus annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "An informative report on a particular locus." ;
+ oboInOwl:hasExactSynonym "Locus report" ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2764 a owl:Class ;
+ rdfs:label "Protein name (UniProt)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Official name of a protein as used in the UniProt database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1009 .
+
+:data_2765 a owl:Class ;
+ rdfs:label "Term ID list" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2872 ;
+ oboInOwl:hasDefinition "One or more terms from one or more controlled vocabularies which are annotations on an entity." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The concepts are typically provided as a persistent identifier or some other link the source ontologies. Evidence of the validity of the annotation might be included." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2766 a owl:Class ;
+ rdfs:label "HAMAP ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a protein family from the HAMAP database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_2767 a owl:Class ;
+ rdfs:label "Identifier with metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.12" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "Basic information concerning an identifier of data (typically including the identifier itself). For example, a gene symbol with information concerning its provenance." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2768 a owl:Class ;
+ rdfs:label "Gene symbol annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "Annotation about a gene symbol." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2770 a owl:Class ;
+ rdfs:label "HIT ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an RNA transcript from the H-InvDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2769 .
+
+:data_2771 a owl:Class ;
+ rdfs:label "HIX ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene cluster in the H-InvDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2772 a owl:Class ;
+ rdfs:label "HPA antibody id" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a antibody from the HPA database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2773 a owl:Class ;
+ rdfs:label "IMGT/HLA ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a human major histocompatibility complex (HLA) or other protein from the IMGT/HLA database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2774 a owl:Class ;
+ rdfs:label "Gene ID (JCVI)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene assigned by the J. Craig Venter Institute (JCVI)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2775 a owl:Class ;
+ rdfs:label "Kinase name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a kinase protein." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1009 .
+
+:data_2776 a owl:Class ;
+ rdfs:label "ConsensusPathDB entity ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a physical entity from the ConsensusPathDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2917 .
+
+:data_2777 a owl:Class ;
+ rdfs:label "ConsensusPathDB entity name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a physical entity from the ConsensusPathDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2917 .
+
+:data_2778 a owl:Class ;
+ rdfs:label "CCAP strain number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The number of a strain of algae and protozoa from the CCAP database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2912 .
+
+:data_2780 a owl:Class ;
+ rdfs:label "Stock number (TAIR)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A stock number from The Arabidopsis information resource (TAIR)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2779 .
+
+:data_2781 a owl:Class ;
+ rdfs:label "REDIdb ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the RNA editing database (REDIdb)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1097,
+ :data_2091 .
+
+:data_2782 a owl:Class ;
+ rdfs:label "SMART domain name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a domain from the SMART database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1131 .
+
+:data_2783 a owl:Class ;
+ rdfs:label "Protein family ID (PANTHER)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Accession number of an entry (family) from the PANTHER database." ;
+ oboInOwl:hasExactSynonym "Panther family ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2910 .
+
+:data_2784 a owl:Class ;
+ rdfs:label "RNAVirusDB ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier for a virus from the RNAVirusDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "Could list (or reference) other taxa here from https://www.phenoscape.org/wiki/Taxonomic_Rank_Vocabulary." ;
+ rdfs:subClassOf :data_2091,
+ :data_2785 .
+
+:data_2786 a owl:Class ;
+ rdfs:label "NCBI Genome Project ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a genome project assigned by NCBI." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2903 .
+
+:data_2787 a owl:Class ;
+ rdfs:label "NCBI genome accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of a whole genome assigned by the NCBI." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2903 .
+
+:data_2788 a owl:Class ;
+ rdfs:label "Sequence profile data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Data concerning, extracted from, or derived from the analysis of a sequence profile, such as its name, length, technical details about the profile or it's construction, the biological role or annotation, and so on." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0860 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2789 a owl:Class ;
+ rdfs:label "Protein ID (TopDB)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a membrane protein from the TopDB database." ;
+ oboInOwl:hasExactSynonym "TopDB ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2791 a owl:Class ;
+ rdfs:label "Reference map name (SWISS-2DPAGE)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a reference map gel from the SWISS-2DPAGE database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2790 .
+
+:data_2792 a owl:Class ;
+ rdfs:label "Protein ID (PeroxiBase)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a peroxidase protein from the PeroxiBase database." ;
+ oboInOwl:hasExactSynonym "PeroxiBase ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2793 a owl:Class ;
+ rdfs:label "SISYPHUS ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the SISYPHUS database of tertiary structure alignments." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1072,
+ :data_2091 .
+
+:data_2794 a owl:Class ;
+ rdfs:label "ORF ID" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Accession of an open reading frame (catalogued in a database)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1893,
+ :data_2091,
+ :data_2795 .
+
+:data_2796 a owl:Class ;
+ rdfs:label "Linucs ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the GlycosciencesDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2900 .
+
+:data_2797 a owl:Class ;
+ rdfs:label "Protein ID (LGICdb)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a ligand-gated ion channel protein from the LGICdb database." ;
+ oboInOwl:hasExactSynonym "LGICdb ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2798 a owl:Class ;
+ rdfs:label "MaizeDB ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of an EST sequence from the MaizeDB database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2728 .
+
+:data_2799 a owl:Class ;
+ rdfs:label "Gene ID (MfunGD)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of gene in the MfunGD database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2800 a owl:Class ;
+ rdfs:label "Orpha number" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of a disease from the Orpha database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_1622 ],
+ :data_1150,
+ :data_2091 .
+
+:data_2802 a owl:Class ;
+ rdfs:label "Protein ID (EcID)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a protein from the EcID database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2803 a owl:Class ;
+ rdfs:label "Clone ID (RefSeq)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier of a cDNA molecule catalogued in the RefSeq database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1098,
+ :data_1855 .
+
+:data_2804 a owl:Class ;
+ rdfs:label "Protein ID (ConoServer)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Unique identifier for a cone snail toxin protein from the ConoServer database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_2805 a owl:Class ;
+ rdfs:label "GeneSNP ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier of a GeneSNP database entry." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2294 .
+
+:data_2831 a owl:Class ;
+ rdfs:label "Databank" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A flat-file (textual) data archive." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0957 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2832 a owl:Class ;
+ rdfs:label "Web portal" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A web site providing data (web pages) on a common theme to a HTTP client." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0958 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2835 a owl:Class ;
+ rdfs:label "Gene ID (VBASE2)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Identifier for a gene from the VBASE2 database." ;
+ oboInOwl:hasExactSynonym "VBASE2 ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2295 .
+
+:data_2836 a owl:Class ;
+ rdfs:label "DPVweb ID" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A unique identifier for a virus from the DPVweb database." ;
+ oboInOwl:hasExactSynonym "DPVweb virus ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2785 .
+
+:data_2837 a owl:Class ;
+ rdfs:label "Pathway ID (BioSystems)" ;
+ :created_in "beta12orEarlier" ;
+ :regex "[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the BioSystems pathway database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2365 .
+
+:data_2838 a owl:Class ;
+ rdfs:label "Experimental data (proteomics)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2531 ;
+ oboInOwl:hasDefinition "Data concerning a proteomics experiment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2856 a owl:Class ;
+ rdfs:label "Structural distance matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Distances (values representing similarity) between a group of molecular structures." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2855 .
+
+:data_2857 a owl:Class ;
+ rdfs:label "Article metadata" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2526 ;
+ oboInOwl:hasDefinition "Bibliographic data concerning scientific article(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2866 a owl:Class ;
+ rdfs:label "Northern blot report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Northern Blot experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2874 a owl:Class ;
+ rdfs:label "Sequence set (polymorphic)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1234 ;
+ oboInOwl:hasDefinition "A set of sub-sequences displaying some type of polymorphism, typically indicating the sequence in which they occur, their position and other metadata." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2875 a owl:Class ;
+ rdfs:label "DRCAT resource" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1883 ;
+ oboInOwl:hasDefinition "An entry (resource) from the DRCAT bioinformatics resource catalogue." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2878 a owl:Class ;
+ rdfs:label "Protein structural motif" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "3D coordinate and associated data for a protein (3D) structural motif; any group of contiguous or non-contiguous amino acid residues but typically those forming a feature with a structural or functional role." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1460 .
+
+:data_2880 a owl:Class ;
+ rdfs:label "Secondary structure image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.4" ;
+ oboInOwl:consider :data_2992 ;
+ oboInOwl:hasDefinition "Image of one or more molecular secondary structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2881 a owl:Class ;
+ rdfs:label "Secondary structure report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2085 ;
+ oboInOwl:hasDefinition "An informative report on general information, properties or features of one or more molecular secondary structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2882 a owl:Class ;
+ rdfs:label "DNA features" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_1276 ;
+ oboInOwl:hasDefinition "DNA sequence-specific feature annotation (not in a feature table)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2883 a owl:Class ;
+ rdfs:label "RNA features report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "Features concerning RNA or regions of DNA that encode an RNA molecule." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2886 a owl:Class ;
+ rdfs:label "Protein sequence record" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A protein sequence and associated metadata." ;
+ oboInOwl:hasExactSynonym "Sequence record (protein)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0849,
+ :data_2976 .
+
+:data_2887 a owl:Class ;
+ rdfs:label "Nucleic acid sequence record" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A nucleic acid sequence and associated metadata." ;
+ oboInOwl:hasExactSynonym "Nucleotide sequence record",
+ "Sequence record (nucleic acid)" ;
+ oboInOwl:hasNarrowSynonym "DNA sequence record",
+ "RNA sequence record" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0849,
+ :data_2977 .
+
+:data_2888 a owl:Class ;
+ rdfs:label "Protein sequence record (full)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A protein sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2889 a owl:Class ;
+ rdfs:label "Nucleic acid sequence record (full)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A nucleic acid sequence and comprehensive metadata (such as a feature table), typically corresponding to a full entry from a molecular sequence database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0849 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2892 a owl:Class ;
+ rdfs:label "Cell type name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The name of a type or group of cells." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2655 .
+
+:data_2896 a owl:Class ;
+ rdfs:label "Toxin name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Name of a toxin." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_2576 .
+
+:data_2899 a owl:Class ;
+ rdfs:label "Drug name" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Common name of a drug." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_0990,
+ :data_0993 .
+
+:data_2904 a owl:Class ;
+ rdfs:label "Map accession" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "An accession of a map of a molecular sequence (deposited in a database)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2117 .
+
+:data_2916 a owl:Class ;
+ rdfs:label "DDBJ accession" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "An identifier of an entry from the DDBJ sequence database." ;
+ oboInOwl:hasExactSynonym "DDBJ ID",
+ "DDBJ accession number",
+ "DDBJ identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1103 .
+
+:data_2925 a owl:Class ;
+ rdfs:label "Sequence data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:consider :data_2534 ;
+ oboInOwl:hasDefinition "Data concerning, extracted from, or derived from the analysis of molecular sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2927 a owl:Class ;
+ rdfs:label "Codon usage" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0914 ;
+ oboInOwl:hasDefinition "Data concerning codon usage." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2954 a owl:Class ;
+ rdfs:label "Article report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0972,
+ :data_3779 ;
+ oboInOwl:hasDefinition "Data derived from the analysis of a scientific text such as a full text article from a scientific journal." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2957 a owl:Class ;
+ rdfs:label "Hopp and Woods plot" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A Hopp and Woods plot of predicted antigenicity of a peptide or protein." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1534,
+ :data_2884 .
+
+:data_2958 a owl:Class ;
+ rdfs:label "Nucleic acid melting curve" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1583,
+ :data_2884 ;
+ oboInOwl:hasDefinition "A melting curve of a double-stranded nucleic acid molecule (DNA or DNA/RNA)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1583 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2959 a owl:Class ;
+ rdfs:label "Nucleic acid probability profile" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1583 ;
+ oboInOwl:hasDefinition "A probability profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1583 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2960 a owl:Class ;
+ rdfs:label "Nucleic acid temperature profile" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1583 ;
+ oboInOwl:hasDefinition "A temperature profile of a double-stranded nucleic acid molecule (DNA or DNA/RNA)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1583 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2961 a owl:Class ;
+ rdfs:label "Gene regulatory network report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report typically including a map (diagram) of a gene regulatory network." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2984 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2965 a owl:Class ;
+ rdfs:label "2D PAGE gel report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "An informative report on a two-dimensional (2D PAGE) gel." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2966 a owl:Class ;
+ rdfs:label "Oligonucleotide probe sets annotation" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.14" ;
+ oboInOwl:hasDefinition "General annotation on a set of oligonucleotide probes, such as the gene name with which the probe set is associated and which probes belong to the set." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2717 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2967 a owl:Class ;
+ rdfs:label "Microarray image" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2968 ;
+ oboInOwl:hasDefinition "An image from a microarray experiment which (typically) allows a visualisation of probe hybridisation and gene-expression data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2971 a owl:Class ;
+ rdfs:label "Workflow data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0949 ;
+ oboInOwl:hasDefinition "Data concerning a computational workflow." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2972 a owl:Class ;
+ rdfs:label "Workflow" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0949 ;
+ oboInOwl:hasDefinition "A computational workflow." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2973 a owl:Class ;
+ rdfs:label "Secondary structure data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2085 ;
+ oboInOwl:hasDefinition "Data concerning molecular secondary structure data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2974 a owl:Class ;
+ rdfs:label "Protein sequence (raw)" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "Deprecated because this is bloat / confusing & better handled as an EDAM Format concept - \"raw\" sequences just imply a particular format (i.e. one with a vanilla string, possible in a particular alphabet, with no metadata)." ;
+ :obsolete_since "1.23" ;
+ :oldParent :data_0848 ;
+ oboInOwl:hasDefinition "A raw protein sequence (string of characters)." ;
+ oboInOwl:hasExactSynonym "Raw amino acid sequence",
+ "Raw amino acid sequences",
+ "Raw protein sequence",
+ "Raw sequence (protein)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2976 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2980 a owl:Class ;
+ rdfs:label "Protein classification" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "Was deprecated since 1.5, but not correctly (fully) obsoleted until 1.19." ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "An informative report concerning the classification of protein sequences or structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2981 a owl:Class ;
+ rdfs:label "Sequence motif data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Data concerning specific or conserved pattern in molecular sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0860 ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2982 a owl:Class ;
+ rdfs:label "Sequence profile data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1354 ;
+ oboInOwl:hasDefinition "Data concerning models representing a (typically multiple) sequence alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2983 a owl:Class ;
+ rdfs:label "Pathway or network data" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_2600,
+ :data_2984 ;
+ oboInOwl:hasDefinition "Data concerning a specific biological pathway or network." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2986 a owl:Class ;
+ rdfs:label "Nucleic acid classification" ;
+ :created_in "beta12orEarlier" ;
+ :deprecation_comment "Was deprecated since 1.5, but not correctly (fully) obsoleted until 1.19." ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3148 ;
+ oboInOwl:hasDefinition "Data concerning the classification of nucleic acid sequences or structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2987 a owl:Class ;
+ rdfs:label "Classification report" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_2048 ;
+ oboInOwl:hasDefinition "A report on a classification of molecular sequences, structures or other entities." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This can include an entire classification, components such as classifiers, assignments of entities to a classification and so on." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2989 a owl:Class ;
+ rdfs:label "Protein features report (key folding sites)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "key residues involved in protein folding." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_2994 a owl:Class ;
+ rdfs:label "Phylogenetic character weights" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Weights for sequence positions or characters in phylogenetic analysis where zero is defined as unweighted." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2523 .
+
+:data_3022 a owl:Class ;
+ rdfs:label "NCBI genetic code ID" ;
+ :created_in "beta12orEarlier" ;
+ :example "16" ;
+ :regex "[1-9][0-9]?" ;
+ oboInOwl:hasDefinition "Identifier of a genetic code in the NCBI list of genetic codes." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2127 .
+
+:data_3026 a owl:Class ;
+ rdfs:label "GO concept name (biological process)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2339 ;
+ oboInOwl:hasDefinition "The name of a concept for a biological process from the GO ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3027 a owl:Class ;
+ rdfs:label "GO concept name (molecular function)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :data_2339 ;
+ oboInOwl:hasDefinition "The name of a concept for a molecular function from the GO ontology." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3028 a owl:Class ;
+ rdfs:label "Taxonomy" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Data concerning the classification, identification and naming of organisms." ;
+ oboInOwl:hasExactSynonym "Taxonomic data" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This is a broad data type and is used a placeholder for other, more specific types." ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_0084 ],
+ :data_0006 .
+
+:data_3029 a owl:Class ;
+ rdfs:label "Protein ID (EMBL/GenBank/DDBJ)" ;
+ :created_in "beta13" ;
+ oboInOwl:hasDefinition "EMBL/GENBANK/DDBJ coding feature protein identifier, issued by International collaborators." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "This qualifier consists of a stable ID portion (3+5 format with 3 position letters and 5 numbers) plus a version number after the decimal point. When the protein sequence encoded by the CDS changes, only the version number of the /protein_id value is incremented; the stable part of the /protein_id remains unchanged and as a result will permanently be associated with a given protein; this qualifier is valid only on CDS features which translate into a valid protein." ;
+ rdfs:subClassOf :data_2091,
+ :data_2907 .
+
+:data_3031 a owl:Class ;
+ rdfs:label "Core data" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:hasDefinition "A type of data that (typically) corresponds to entries from the primary biological databases and which is (typically) the primary input or output of a tool, i.e. the data the tool processes or generates, as distinct from metadata and identifiers which describe and identify such core data, parameters that control the behaviour of tools, reports of derivative data generated by tools and annotation." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0006 ;
+ rdfs:comment "Core data entities typically have a format and may be identified by an accession number." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3085 a owl:Class ;
+ rdfs:label "Protein sequence composition" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report (typically a table) on character or word composition / frequency of protein sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1261 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3086 a owl:Class ;
+ rdfs:label "Nucleic acid sequence composition (report)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "A report (typically a table) on character or word composition / frequency of nucleic acid sequence(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1261 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3101 a owl:Class ;
+ rdfs:label "Protein domain classification node" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "A node from a classification of protein structural domain(s)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3102 a owl:Class ;
+ rdfs:label "CAS number" ;
+ :created_in "beta13" ;
+ :deprecation_comment "Duplicates http://edamontology.org/data_1002, hence deprecated." ;
+ :obsolete_since "1.23" ;
+ :oldParent :data_2895 ;
+ oboInOwl:hasDefinition "Unique numerical identifier of chemicals in the scientific literature, as assigned by the Chemical Abstracts Service." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1002 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3103 a owl:Class ;
+ rdfs:label "ATC code" ;
+ :created_in "beta13" ;
+ oboInOwl:hasDefinition "Unique identifier of a drug conforming to the Anatomical Therapeutic Chemical (ATC) Classification System, a drug classification system controlled by the WHO Collaborating Centre for Drug Statistics Methodology (WHOCC)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2895 .
+
+:data_3104 a owl:Class ;
+ rdfs:label "UNII" ;
+ :created_in "beta13" ;
+ oboInOwl:hasDefinition "A unique, unambiguous, alphanumeric identifier of a chemical substance as catalogued by the Substance Registration System of the Food and Drug Administration (FDA)." ;
+ oboInOwl:hasExactSynonym "Unique Ingredient Identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1086 .
+
+:data_3105 a owl:Class ;
+ rdfs:label "Geotemporal metadata" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0006 ;
+ oboInOwl:hasDefinition "Basic information concerning geographical location or time." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3107 a owl:Class ;
+ rdfs:label "Sequence feature name" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.15" ;
+ oboInOwl:hasDefinition "A name of a sequence feature, e.g. the name of a feature to be displayed to an end-user." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1022 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3116 a owl:Class ;
+ rdfs:label "Microarray protocol annotation" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Annotation on laboratory and/or data processing protocols used in an microarray experiment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:comment "This might describe e.g. the normalisation methods used to process the raw data." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3119 a owl:Class ;
+ rdfs:label "Sequence features (compositionally-biased regions)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_1261 ;
+ oboInOwl:hasDefinition "A report of regions in a molecular sequence that are biased to certain characters." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3122 a owl:Class ;
+ rdfs:label "Nucleic acid features (difference and change)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:hasDefinition "A report on features in a nucleic acid sequence that indicate changes to or differences between sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3129 a owl:Class ;
+ rdfs:label "Protein features report (repeats)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "short repetitive subsequences (repeat sequences) in a protein sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1277 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3130 a owl:Class ;
+ rdfs:label "Sequence motif matches (protein)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0858 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3131 a owl:Class ;
+ rdfs:label "Sequence motif matches (nucleic acid)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report on the location of matches to profiles, motifs (conserved or functional patterns) or other signatures in one or more nucleic acid sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_0858 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3132 a owl:Class ;
+ rdfs:label "Nucleic acid features (d-loop)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3128 ;
+ oboInOwl:hasDefinition "A report on displacement loops in a mitochondrial DNA sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A displacement loop is a region of mitochondrial DNA in which one of the strands is displaced by an RNA molecule." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3133 a owl:Class ;
+ rdfs:label "Nucleic acid features (stem loop)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3128 ;
+ oboInOwl:hasDefinition "A report on stem loops in a DNA sequence." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A stem loop is a hairpin structure; a double-helical structure formed when two complementary regions of a single strand of RNA or DNA molecule form base-pairs." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3137 a owl:Class ;
+ rdfs:label "Non-coding RNA" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "features of non-coding or functional RNA molecules, including tRNA and rRNA." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1276 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3138 a owl:Class ;
+ rdfs:label "Transcriptional features (report)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3134 ;
+ oboInOwl:hasDefinition "Features concerning transcription of DNA into RNA including the regulation of transcription." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This includes promoters, CAAT signals, TATA signals, -35 signals, -10 signals, GC signals, primer binding sites for initiation of transcription or reverse transcription, enhancer, attenuator, terminators and ribosome binding sites." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3140 a owl:Class ;
+ rdfs:label "Nucleic acid features (immunoglobulin gene structure)" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0916 ;
+ oboInOwl:hasDefinition "A report on predicted or actual immunoglobulin gene structure including constant, switch and variable regions and diversity, joining and variable segments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3141 a owl:Class ;
+ rdfs:label "SCOP class" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'class' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3142 a owl:Class ;
+ rdfs:label "SCOP fold" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'fold' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3143 a owl:Class ;
+ rdfs:label "SCOP superfamily" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'superfamily' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3144 a owl:Class ;
+ rdfs:label "SCOP family" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'family' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3145 a owl:Class ;
+ rdfs:label "SCOP protein" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'protein' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3146 a owl:Class ;
+ rdfs:label "SCOP species" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0907 ;
+ oboInOwl:hasDefinition "Information on a 'species' node from the SCOP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3147 a owl:Class ;
+ rdfs:label "Mass spectrometry experiment" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "mass spectrometry experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3154 a owl:Class ;
+ rdfs:label "Protein alignment" ;
+ :created_in "beta13" ;
+ :obsolete_since "1.24" ;
+ :oldParent :operation_2928 ;
+ oboInOwl:consider :data_0878,
+ :data_1384,
+ :data_1481 ;
+ oboInOwl:hasDefinition "An alignment of protein sequences and/or structures." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated true .
+
+:data_3165 a owl:Class ;
+ rdfs:label "NGS experiment" ;
+ :created_in "1.0" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "sequencing experiment, including samples, sampling, preparation, sequencing, and analysis." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3231 a owl:Class ;
+ rdfs:label "GWAS report" ;
+ :created_in "1.1" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report concerning genome-wide association study experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3238 a owl:Class ;
+ rdfs:label "Cell type ontology ID" ;
+ :created_in "1.2" ;
+ :regex "CL_[0-9]{7}" ;
+ oboInOwl:hasDefinition "Cell type ontology concept ID." ;
+ oboInOwl:hasExactSynonym "CL ID" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091,
+ :data_2893 .
+
+:data_3264 a owl:Class ;
+ rdfs:label "COSMIC ID" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "Identifier of a COSMIC database entry." ;
+ oboInOwl:hasExactSynonym "COSMIC identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2294 .
+
+:data_3265 a owl:Class ;
+ rdfs:label "HGMD ID" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "Identifier of a HGMD database entry." ;
+ oboInOwl:hasExactSynonym "HGMD identifier" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2294 .
+
+:data_3266 a owl:Class ;
+ rdfs:label "Sequence assembly ID" ;
+ :created_in "1.3" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Unique identifier of sequence assembly." ;
+ oboInOwl:hasNarrowSynonym "Sequence assembly version" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1064 .
+
+:data_3268 a owl:Class ;
+ rdfs:label "Sequence feature type" ;
+ :created_in "1.3" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_0842 ;
+ oboInOwl:hasDefinition "A label (text token) describing a type of sequence feature such as gene, transcript, cds, exon, repeat, simple, misc, variation, somatic variation, structural variation, somatic structural variation, constrained or regulatory." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3269 a owl:Class ;
+ rdfs:label "Gene homology (report)" ;
+ :created_in "1.3" ;
+ :obsolete_since "1.5" ;
+ oboInOwl:consider :data_3148 ;
+ oboInOwl:hasDefinition "An informative report on gene homologues between species." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3270 a owl:Class ;
+ rdfs:label "Ensembl gene tree ID" ;
+ :created_in "1.3" ;
+ :example "ENSGT00390000003602" ;
+ oboInOwl:hasDefinition "Unique identifier for a gene tree from the Ensembl database." ;
+ oboInOwl:hasExactSynonym "Ensembl ID (gene tree)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1068,
+ :data_2091,
+ :data_2610 .
+
+:data_3271 a owl:Class ;
+ rdfs:label "Gene tree" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "A phylogenetic tree that is an estimate of the character's phylogeny." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0872 .
+
+:data_3272 a owl:Class ;
+ rdfs:label "Species tree" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "A phylogenetic tree that reflects phylogeny of the taxa from which the characters (used in calculating the tree) were sampled." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0872 .
+
+:data_3273 a owl:Class ;
+ rdfs:label "Sample ID" ;
+ :created_in "1.3" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Name or other identifier of an entry from a biosample database." ;
+ oboInOwl:hasExactSynonym "Sample accession" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_identifier_of ;
+ owl:someValuesFrom :data_3113 ],
+ :data_0976 .
+
+:data_3274 a owl:Class ;
+ rdfs:label "MGI accession" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "Identifier of an object from the MGI database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109 .
+
+:data_3275 a owl:Class ;
+ rdfs:label "Phenotype name" ;
+ :created_in "1.3" ;
+ oboInOwl:hasDefinition "Name of a phenotype." ;
+ oboInOwl:hasExactSynonym "Phenotype",
+ "Phenotypes" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099 .
+
+:data_3356 a owl:Class ;
+ rdfs:label "Hidden Markov model"@en ;
+ :created_in "1.4" ;
+ :obsolete_since "1.15" ;
+ oboInOwl:hasDefinition "A statistical Markov model of a system which is assumed to be a Markov process with unobserved (hidden) states." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1364 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3426 a owl:Class ;
+ rdfs:label "Proteomics experiment report" ;
+ :created_in "1.5" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Report concerning proteomics experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3427 a owl:Class ;
+ rdfs:label "RNAi report" ;
+ :created_in "1.5" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "RNAi experiments." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3428 a owl:Class ;
+ rdfs:label "Simulation experiment report" ;
+ :created_in "1.5" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "biological computational model experiments (simulation), for example the minimum information required in order to permit its correct interpretation and reproduction." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_2531 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3442 a owl:Class ;
+ rdfs:label "MRI image" ;
+ :created_in "1.7" ;
+ oboInOwl:hasDefinition "An imaging technique that uses magnetic fields and radiowaves to form images, typically to investigate the anatomy and physiology of the human body." ;
+ oboInOwl:hasExactSynonym "MRT image",
+ "Magnetic resonance imaging image",
+ "Magnetic resonance tomography image",
+ "NMRI image",
+ "Nuclear magnetic resonance imaging image" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_3384 ],
+ :data_3424 .
+
+:data_3449 a owl:Class ;
+ rdfs:label "Cell migration track image" ;
+ :created_in "1.7" ;
+ oboInOwl:hasDefinition "An image from a cell migration track assay." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_2229 ],
+ :data_2968 .
+
+:data_3451 a owl:Class ;
+ rdfs:label "Rate of association" ;
+ :created_in "1.7" ;
+ oboInOwl:hasDefinition "Rate of association of a protein with another protein or some other molecule." ;
+ oboInOwl:hasExactSynonym "kon" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897 .
+
+:data_3479 a owl:Class ;
+ rdfs:label "Gene order" ;
+ :created_in "1.7" ;
+ oboInOwl:hasDefinition "Multiple gene identifiers in a specific order." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Such data are often used for genome rearrangement tools and phylogenetic tree labeling." ;
+ rdfs:subClassOf :data_2082 .
+
+:data_3490 a owl:Class ;
+ rdfs:label "Chemical structure sketch" ;
+ :created_in "1.8" ;
+ :obsolete_since "1.21" ;
+ :oldParent :data_1712 ;
+ oboInOwl:hasDefinition "A sketch of a small molecule made with some specialised drawing package." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_1712 ;
+ rdfs:comment "Chemical structure sketches are used for presentational purposes but also as inputs to various analysis software." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3492 a owl:Class ;
+ rdfs:label "Nucleic acid signature" ;
+ :created_in "1.8" ;
+ oboInOwl:hasDefinition "An informative report about a specific or conserved nucleic acid sequence pattern." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2762 .
+
+:data_3496 a owl:Class ;
+ rdfs:label "RNA sequence (raw)" ;
+ :created_in "1.8" ;
+ :deprecation_comment "Deprecated because this is bloat / confusing & better handled as an EDAM Format concept - \"raw\" sequences just imply a particular format (i.e. one with a vanilla string, possible in a particular alphabet, with no metadata)." ;
+ :obsolete_since "1.23" ;
+ :oldParent :data_2975 ;
+ oboInOwl:hasDefinition "A raw RNA sequence." ;
+ oboInOwl:hasExactSynonym "RNA raw sequence",
+ "Raw RNA sequence",
+ "Raw sequence (RNA)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_3495 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3497 a owl:Class ;
+ rdfs:label "DNA sequence (raw)" ;
+ :created_in "1.8" ;
+ :deprecation_comment "Deprecated because this is bloat / confusing & better handled as an EDAM Format concept - \"raw\" sequences just imply a particular format (i.e. one with a vanilla string, possible in a particular alphabet, with no metadata)." ;
+ :obsolete_since "1.23" ;
+ :oldParent :data_2975 ;
+ oboInOwl:hasDefinition "A raw DNA sequence." ;
+ oboInOwl:hasExactSynonym "DNA raw sequence",
+ "Raw DNA sequence",
+ "Raw sequence (DNA)" ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :data_3494 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:data_3509 a owl:Class ;
+ rdfs:label "Ontology mapping" ;
+ :created_in "1.8" ;
+ oboInOwl:hasDefinition "A mapping of supplied textual terms or phrases to ontology concepts (URIs)." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2093 .
+
+:data_3546 a owl:Class ;
+ rdfs:label "Image metadata" ;
+ :created_in "1.9" ;
+ oboInOwl:hasDefinition "Any data concerning a specific biological or biomedical image." ;
+ oboInOwl:hasExactSynonym "Image-associated data",
+ "Image-related data" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "This can include basic provenance and technical information about the image, scientific annotation and so on." ;
+ rdfs:subClassOf :data_2048 .
+
+:data_3558 a owl:Class ;
+ rdfs:label "Clinical trial report" ;
+ :created_in "1.9" ;
+ oboInOwl:hasDefinition "A human-readable collection of information concerning a clinical trial." ;
+ oboInOwl:hasExactSynonym "Clinical trial information" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2048 .
+
+:data_3568 a owl:Class ;
+ rdfs:label "Gene Expression Atlas Experiment ID" ;
+ :created_in "1.10" ;
+ oboInOwl:hasDefinition "Accession number of an entry from the Gene Expression Atlas." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1078 .
+
+:data_3668 a owl:Class ;
+ rdfs:label "Disease name" ;
+ :created_in "1.12" ;
+ oboInOwl:hasDefinition "The name of some disease." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2099,
+ :data_3667 .
+
+:data_3670 a owl:Class ;
+ rdfs:label "Online course" ;
+ :created_in "1.12" ;
+ oboInOwl:hasDefinition "A training course available for use on the Web." ;
+ oboInOwl:hasExactSynonym "On-line course" ;
+ oboInOwl:hasNarrowSynonym "MOOC",
+ "Massive open online course" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3669 .
+
+:data_3718 a owl:Class ;
+ rdfs:label "Pathogenicity report" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "Information about the ability of an organism to cause disease in a corresponding host." ;
+ oboInOwl:hasExactSynonym "Pathogenicity" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3716 .
+
+:data_3719 a owl:Class ;
+ rdfs:label "Biosafety classification" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "Information about the biosafety classification of an organism according to corresponding law." ;
+ oboInOwl:hasExactSynonym "Biosafety level" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3716 .
+
+:data_3720 a owl:Class ;
+ rdfs:label "Geographic location" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "A report about localisation of the isolaton of biological material e.g. country or coordinates." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3717 .
+
+:data_3721 a owl:Class ;
+ rdfs:label "Isolation source" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "A report about any kind of isolation source of biological material e.g. blood, water, soil." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3717 .
+
+:data_3722 a owl:Class ;
+ rdfs:label "Physiology parameter" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "Experimentally determined parameter of the physiology of an organism, e.g. substrate spectrum." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3108 .
+
+:data_3723 a owl:Class ;
+ rdfs:label "Morphology parameter" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "Experimentally determined parameter of the morphology of an organism, e.g. size & shape." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3108 .
+
+:data_3724 a owl:Class ;
+ rdfs:label "Cultivation parameter" ;
+ :created_in "1.14" ;
+ oboInOwl:hasDefinition "Experimental determined parameter for the cultivation of an organism." ;
+ oboInOwl:hasExactSynonym "Cultivation conditions" ;
+ oboInOwl:hasNarrowSynonym "Carbon source",
+ "Culture media composition",
+ "Nitrogen source",
+ "Salinity",
+ "Temperature",
+ "pH value" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3108 .
+
+:data_3733 a owl:Class ;
+ rdfs:label "Flow cell identifier" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "An identifier of a flow cell of a sequencing machine." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "A flow cell is used to immobilise, amplify and sequence millions of molecules at once. In Illumina machines, a flowcell is composed of 8 \"lanes\" which allows 8 experiments in a single analysis." ;
+ rdfs:subClassOf :data_3732 .
+
+:data_3734 a owl:Class ;
+ rdfs:label "Lane identifier" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "An identifier of a lane within a flow cell of a sequencing machine, within which millions of sequences are immobilised, amplified and sequenced." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3732 .
+
+:data_3735 a owl:Class ;
+ rdfs:label "Run number" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "A number corresponding to the number of an analysis performed by a sequencing machine. For example, if it's the 13th analysis, the run is 13." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3732 .
+
+:data_3737 a owl:Class ;
+ rdfs:label "Alpha diversity data" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "The mean species diversity in sites or habitats at a local scale." ;
+ oboInOwl:hasExactSynonym "α-diversity" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3707 .
+
+:data_3738 a owl:Class ;
+ rdfs:label "Beta diversity data" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "The ratio between regional and local species diversity." ;
+ oboInOwl:hasExactSynonym "True beta diversity",
+ "β-diversity" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3707 .
+
+:data_3739 a owl:Class ;
+ rdfs:label "Gamma diversity data" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "The total species diversity in a landscape." ;
+ oboInOwl:hasExactSynonym "ɣ-diversity" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3707 .
+
+:data_3743 a owl:Class ;
+ rdfs:label "Ordination plot" ;
+ :created_in "1.15" ;
+ oboInOwl:hasDefinition "A plot in which community data (e.g. species abundance data) is summarised. Similar species and samples are plotted close together, and dissimilar species and samples are plotted placed far apart." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_0897,
+ :data_2884 .
+
+:data_3756 a owl:Class ;
+ rdfs:label "Localisation score" ;
+ :created_in "1.16" ;
+ oboInOwl:hasDefinition "Score for localization of one or more post-translational modifications in peptide sequence measured by mass spectrometry." ;
+ oboInOwl:hasNarrowSynonym "False localisation rate",
+ "PTM localisation",
+ "PTM score" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1772 .
+
+:data_3757 a owl:Class ;
+ rdfs:label "Unimod ID" ;
+ :created_in "1.16" ;
+ oboInOwl:hasDefinition "Identifier of a protein modification catalogued in the Unimod database." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2618 .
+
+:data_3759 a owl:Class ;
+ rdfs:label "ProteomeXchange ID" ;
+ :created_in "1.16" ;
+ oboInOwl:hasDefinition "Identifier for mass spectrometry proteomics data in the proteomexchange.org repository." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1078 .
+
+:data_3769 a owl:Class ;
+ rdfs:label "BRENDA ontology concept ID" ;
+ :created_in "1.16" ;
+ oboInOwl:hasDefinition "An identifier of a concept from the BRENDA ontology." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_1087,
+ :data_2091 .
+
+:data_3807 a owl:Class ;
+ rdfs:label "EM Movie" ;
+ :created_in "1.19" ;
+ oboInOwl:hasDefinition "Raw DDD movie acquisition from electron microscopy." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_1317 ],
+ :data_3424 .
+
+:data_3808 a owl:Class ;
+ rdfs:label "EM Micrograph" ;
+ :created_in "1.19" ;
+ oboInOwl:hasDefinition "Raw acquistion from electron microscopy or average of an aligned DDD movie." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_1317 ],
+ :data_3424 .
+
+:data_3842 a owl:Class ;
+ rdfs:label "Molecular simulation data" ;
+ :created_in "1.21" ;
+ oboInOwl:hasDefinition "Data coming from molecular simulations, computer \"experiments\" on model molecules." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Typically formed by two separated but indivisible pieces of information: topology data (static) and trajectory data (dynamic)." ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_0081 ],
+ :data_0006 .
+
+:data_3856 a owl:Class ;
+ rdfs:label "RNA central ID" ;
+ :created_in "1.21" ;
+ oboInOwl:hasDefinition "Identifier of an entry from the RNA central database of annotated human miRNAs." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam,
+ edam:identifiers ;
+ rdfs:comment "There are canonical and taxon-specific forms of RNAcentral ID. Canonical form e.g. urs_9or10digits identifies an RNA sequence (within the RNA central database) which may appear in multiple sequences. Taxon-specific form identifies a sequence in the specific taxon (e.g. urs_9or10digits_taxonID)." ;
+ rdfs:subClassOf :data_1097,
+ :data_2091 .
+
+:data_3861 a owl:Class ;
+ rdfs:label "Electronic health record" ;
+ :created_in "1.21" ;
+ oboInOwl:hasDefinition "A human-readable systematic collection of patient (or population) health information in a digital format." ;
+ oboInOwl:hasExactSynonym "EHR",
+ "EMR",
+ "Electronic medical record" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2048 .
+
+:data_3871 a owl:Class ;
+ rdfs:label "Forcefield parameters" ;
+ :created_in "1.22" ;
+ oboInOwl:hasDefinition "Force field parameters: charges, masses, radii, bond lengths, bond dihedrals, etc. define the structural molecular system, and are essential for the proper description and simulation of a molecular system." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_3869 .
+
+:data_3905 a owl:Class ;
+ rdfs:label "Histogram" ;
+ :created_in "1.22" ;
+ oboInOwl:hasDefinition "Visualization of distribution of quantitative data, e.g. expression data, by histograms, violin plots and density plots." ;
+ oboInOwl:hasExactSynonym "Density plot" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2884 .
+
+:data_3914 a owl:Class ;
+ rdfs:label "Quality control report" ;
+ :created_in "1.23" ;
+ oboInOwl:hasDefinition "A human-readable collection of information about about how a scientific experiment or analysis was carried out that results in a specific set of data or results used for further analysis or to test a specific hypothesis." ;
+ oboInOwl:hasExactSynonym "QC metrics",
+ "QC report",
+ "Quality control metrics" ;
+ rdfs:subClassOf :data_2048 .
+
+:data_3917 a owl:Class ;
+ rdfs:label "Count matrix" ;
+ :created_in "1.23" ;
+ oboInOwl:hasDefinition "A table of unnormalized values representing summarised read counts per genomic region (e.g. gene, transcript, peak)." ;
+ oboInOwl:hasExactSynonym "Read count matrix" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_2082 .
+
+:data_3924 a owl:Class ;
+ rdfs:label "DNA structure alignment" ;
+ :created_in "1.24" ;
+ oboInOwl:hasDefinition "Alignment (superimposition) of DNA tertiary (3D) structures." ;
+ oboInOwl:hasExactSynonym "Structure alignment (DNA)" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf :data_1482 .
+
+:data_3932 a owl:Class ;
+ rdfs:label "Q-value" ;
+ :created_in "1.24" ;
+ oboInOwl:hasDefinition "A score derived from the P-value to ensure correction for multiple tests. The Q-value provides an estimate of the positive False Discovery Rate (pFDR), i.e. the rate of false positives among all the cases reported positive: pFDR = FP / (FP + TP)." ;
+ oboInOwl:hasExactSynonym "Adjusted P-value",
+ "FDR",
+ "Padj",
+ "pFDR" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:comment "Q-values are widely used in high-throughput data analysis (e.g. detection of differentially expressed genes from transcriptome data)." ;
+ rdfs:seeAlso ;
+ rdfs:subClassOf :data_0951 .
+
+:data_3949 a owl:Class ;
+ rdfs:label "Profile HMM" ;
+ :created_in "1.24" ;
+ oboInOwl:hasDefinition "A profile HMM is a variant of a Hidden Markov model that is derived specifically from a set of (aligned) biological sequences. Profile HMMs provide the basis for a position-specific scoring system, which can be used to align sequences and search databases for related sequences." ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:seeAlso ;
+ rdfs:subClassOf :data_1354,
+ :data_1364 .
+
+:data_3952 a owl:Class ;
+ rdfs:label "Pathway ID (WikiPathways)" ;
+ :created_in "1.24" ;
+ :documentation ;
+ :regex "WP[0-9]+" ;
+ oboInOwl:hasDefinition "Identifier of a pathway from the WikiPathways pathway database." ;
+ oboInOwl:hasExactSynonym "WikiPathways ID",
+ "WikiPathways pathway ID" ;
+ oboInOwl:inSubset edam:edam,
+ edam:identifiers ;
+ rdfs:subClassOf :data_2091,
+ :data_2109,
+ :data_2365 .
+
+:data_3953 a owl:Class ;
+ rdfs:label "Pathway overrepresentation data" ;
+ :created_in "1.24" ;
+ oboInOwl:hasDefinition "A ranked list of pathways, each associated with z-score, p-value or similar, concerning or derived from the analysis of e.g. a set of genes or proteins." ;
+ oboInOwl:hasExactSynonym "Pathway analysis results",
+ "Pathway enrichment report",
+ "Pathway over-representation report",
+ "Pathway report",
+ "Pathway term enrichment report" ;
+ oboInOwl:inSubset edam:data,
+ edam:edam ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :has_topic ;
+ owl:someValuesFrom :topic_1775 ],
+ :data_3753 .
+
+:deprecation_comment a owl:AnnotationProperty ;
+ rdfs:label "deprecation_comment" ;
+ oboOther:is_metadata_tag "true" ;
+ oboInOwl:hasDefinition "A comment explaining why the comment should be or was deprecated, including name of person commenting (jison, mkalas etc.)" ;
+ oboInOwl:inSubset "concept_properties" .
+
+:documentation a owl:AnnotationProperty ;
+ rdfs:label "Documentation" ;
+ oboOther:is_metadata_tag "true" ;
+ oboInOwl:hasDefinition "'Documentation' trailing modifier (qualifier, 'documentation') of 'xref' links of 'Format' concepts. When 'true', the link is pointing to a page with explanation, description, documentation, or specification of the given data format." ;
+ oboInOwl:hasRelatedSynonym "Specification" ;
+ oboInOwl:inSubset "concept_properties" .
+
+:file_extension a owl:AnnotationProperty ;
+ rdfs:label "File extension" ;
+ oboOther:is_metadata_tag "true" ;
+ oboInOwl:hasDefinition "'File extension' concept property ('file_extension' metadata tag) lists examples of usual file extensions of formats." ;
+ oboInOwl:inSubset "concept_properties" ;
+ rdfs:comment "N.B.: File extensions that are not correspondigly defined at http://filext.com are recorded in EDAM only if not in conflict with http://filext.com, and/or unique and usual within life-science computing.",
+ "Separated by bar ('|'), without a dot ('.') prefix, preferrably not all capital characters." .
+
+:format_1197 a owl:Class ;
+ rdfs:label "InChI" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Chemical structure specified in IUPAC International Chemical Identifier (InChI) line notation." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2035,
+ :format_2330 .
+
+:format_1198 a owl:Class ;
+ rdfs:label "mf" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Chemical structure specified by Molecular Formula (MF), including a count of each element in a compound." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The general MF query format consists of a series of valid atomic symbols, with an optional number or range." ;
+ rdfs:subClassOf :format_2035,
+ :format_2330 .
+
+:format_1199 a owl:Class ;
+ rdfs:label "InChIKey" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The InChIKey (hashed InChI) is a fixed length (25 character) condensed digital representation of an InChI chemical structure specification. It uniquely identifies a chemical compound." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "An InChIKey identifier is not human- nor machine-readable but is more suitable for web searches than an InChI chemical structure specification." ;
+ rdfs:subClassOf :format_2035,
+ :format_2330 .
+
+:format_1200 a owl:Class ;
+ rdfs:label "smarts" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "SMILES ARbitrary Target Specification (SMARTS) format for chemical structure specification, which is a subset of the SMILES line notation." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1196 .
+
+:format_1209 a owl:Class ;
+ rdfs:label "consensus" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for the consensus of two or more molecular sequences." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2095,
+ :format_2097 .
+
+:format_1211 a owl:Class ;
+ rdfs:label "unambiguous pure nucleotide" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for a nucleotide sequence (characters ACGTU only) with possible unknown positions but without ambiguity or non-sequence characters ." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1206,
+ :format_1207 .
+
+:format_1214 a owl:Class ;
+ rdfs:label "unambiguous pure dna" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for a DNA sequence (characters ACGT only) with possible unknown positions but without ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1206,
+ :format_1212 .
+
+:format_1215 a owl:Class ;
+ rdfs:label "pure dna" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for a DNA sequence with possible ambiguity and unknown positions but without non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1210,
+ :format_1212 .
+
+:format_1216 a owl:Class ;
+ rdfs:label "unambiguous pure rna sequence" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for an RNA sequence (characters ACGU only) with possible unknown positions but without ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1206,
+ :format_1213 .
+
+:format_1217 a owl:Class ;
+ rdfs:label "pure rna" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for an RNA sequence with possible ambiguity and unknown positions but without non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1210,
+ :format_1213 .
+
+:format_1218 a owl:Class ;
+ rdfs:label "unambiguous pure protein" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for any protein sequence with possible unknown positions but without ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1206,
+ :format_1208 .
+
+:format_1219 a owl:Class ;
+ rdfs:label "pure protein" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for any protein sequence with possible ambiguity and unknown positions but without non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1208,
+ :format_2094 .
+
+:format_1228 a owl:Class ;
+ rdfs:label "UniGene entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from UniGene." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "A UniGene entry includes a set of transcript sequences assigned to the same transcription locus (gene or expressed pseudogene), with information on protein similarities, gene expression, cDNA clone reagents, and genomic location." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1247 a owl:Class ;
+ rdfs:label "COG sequence cluster format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the COG database of clusters of (related) protein sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1248 a owl:Class ;
+ rdfs:label "EMBL feature location" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format for sequence positions (feature location) as used in DDBJ/EMBL/GenBank database." ;
+ oboInOwl:hasExactSynonym "Feature location" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2078,
+ :format_2330 .
+
+:format_1295 a owl:Class ;
+ rdfs:label "quicktandem" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for tandem repeats in a nucleotide sequence (format generated by the Sanger Centre quicktandem program)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2155,
+ :format_2330 .
+
+:format_1296 a owl:Class ;
+ rdfs:label "Sanger inverted repeats" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for inverted repeats in a nucleotide sequence (format generated by the Sanger Centre inverted program)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2155,
+ :format_2330 .
+
+:format_1297 a owl:Class ;
+ rdfs:label "EMBOSS repeat" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for tandem repeats in a sequence (an EMBOSS report format)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2155,
+ :format_2330 .
+
+:format_1316 a owl:Class ;
+ rdfs:label "est2genome format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of a report on exon-intron structure generated by EMBOSS est2genome." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2031,
+ :format_2330 .
+
+:format_1318 a owl:Class ;
+ rdfs:label "restrict format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for restriction enzyme recognition sites used by EMBOSS restrict program." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2158,
+ :format_2330 .
+
+:format_1319 a owl:Class ;
+ rdfs:label "restover format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for restriction enzyme recognition sites used by EMBOSS restover program." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2158,
+ :format_2330 .
+
+:format_1320 a owl:Class ;
+ rdfs:label "REBASE restriction sites" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format for restriction enzyme recognition sites used by REBASE database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2158,
+ :format_2330 .
+
+:format_1332 a owl:Class ;
+ rdfs:label "FASTA search results format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of results of a sequence database search using FASTA." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "This includes (typically) score data, alignment data and a histogram (of observed and expected distribution of E values.)" ;
+ rdfs:subClassOf :format_2066,
+ :format_2330 .
+
+:format_1334 a owl:Class ;
+ rdfs:label "mspcrunch" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of results of a sequence database search using some variant of MSPCrunch." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2066,
+ :format_2330 .
+
+:format_1335 a owl:Class ;
+ rdfs:label "Smith-Waterman format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of results of a sequence database search using some variant of Smith Waterman." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2066,
+ :format_2330 .
+
+:format_1336 a owl:Class ;
+ rdfs:label "dhf" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of EMBASSY domain hits file (DHF) of hits (sequences) with domain classification information." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database." ;
+ rdfs:subClassOf :format_2066,
+ :format_2330 .
+
+:format_1337 a owl:Class ;
+ rdfs:label "lhf" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of EMBASSY ligand hits file (LHF) of database hits (sequences) with ligand classification information." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The hits are putative ligand-binding sequences and are found from a search of a sequence database." ;
+ rdfs:subClassOf :format_2066,
+ :format_2330 .
+
+:format_1342 a owl:Class ;
+ rdfs:label "InterPro protein view report format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of results of a search of the InterPro database showing matches of query protein sequence(s) to InterPro entries." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The report includes a classification of regions in a query protein sequence which are assigned to a known InterPro protein family or group." ;
+ rdfs:subClassOf :format_1341 .
+
+:format_1343 a owl:Class ;
+ rdfs:label "InterPro match table format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of results of a search of the InterPro database showing matches between protein sequence(s) and signatures for an InterPro entry." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The table presents matches between query proteins (rows) and signature methods (columns) for this entry. Alternatively the sequence(s) might be from from the InterPro entry itself. The match position in the protein sequence and match status (true positive, false positive etc) are indicated." ;
+ rdfs:subClassOf :format_1341 .
+
+:format_1349 a owl:Class ;
+ rdfs:label "HMMER Dirichlet prior" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Dirichlet distribution HMMER format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2074,
+ :format_2330 .
+
+:format_1350 a owl:Class ;
+ rdfs:label "MEME Dirichlet prior" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Dirichlet distribution MEME format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2074,
+ :format_2330 .
+
+:format_1351 a owl:Class ;
+ rdfs:label "HMMER emission and transition" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of a report from the HMMER package on the emission and transition counts of a hidden Markov model." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2075,
+ :format_2330 .
+
+:format_1356 a owl:Class ;
+ rdfs:label "prosite-pattern" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of a regular expression pattern from the Prosite database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2068,
+ :format_2330 .
+
+:format_1357 a owl:Class ;
+ rdfs:label "EMBOSS sequence pattern" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of an EMBOSS sequence pattern." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2068,
+ :format_2330 .
+
+:format_1360 a owl:Class ;
+ rdfs:label "meme-motif" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A motif in the format generated by the MEME program." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2068,
+ :format_2330 .
+
+:format_1366 a owl:Class ;
+ rdfs:label "prosite-profile" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Sequence profile (sequence classifier) format used in the PROSITE database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2069,
+ :format_2330 .
+
+:format_1367 a owl:Class ;
+ rdfs:label "JASPAR format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A profile (sequence classifier) in the format used in the JASPAR database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2069,
+ :format_2330 .
+
+:format_1369 a owl:Class ;
+ rdfs:label "MEME background Markov model" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of the model of random sequences used by MEME." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2072,
+ :format_2330 .
+
+:format_1391 a owl:Class ;
+ rdfs:label "HMMER-aln" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "FASTA-style format for multiple sequences aligned by HMMER package to an HMM." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200,
+ :format_2330,
+ :format_2554 .
+
+:format_1392 a owl:Class ;
+ rdfs:label "DIALIGN format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of multiple sequences aligned by DIALIGN package." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_1393 a owl:Class ;
+ rdfs:label "daf" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBASSY 'domain alignment file' (DAF) format, containing a sequence alignment of protein domains belonging to the same SCOP or CATH family." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The format is clustal-like and includes annotation of domain family classification information." ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_1419 a owl:Class ;
+ rdfs:label "Sequence-MEME profile alignment" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format for alignment of molecular sequences to MEME profiles (position-dependent scoring matrices) as generated by the MAST tool from the MEME package." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2014,
+ :format_2330 .
+
+:format_1421 a owl:Class ;
+ rdfs:label "HMMER profile alignment (sequences versus HMMs)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format used by the HMMER package for an alignment of a sequence against a hidden Markov model database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2014,
+ :format_2330 .
+
+:format_1422 a owl:Class ;
+ rdfs:label "HMMER profile alignment (HMM versus sequences)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format used by the HMMER package for of an alignment of a hidden Markov model against a sequence database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2014,
+ :format_2330 .
+
+:format_1423 a owl:Class ;
+ rdfs:label "Phylip distance matrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of PHYLIP phylogenetic distance matrix data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "Data Type must include the distance matrix, probably as pairs of sequence identifiers with a distance (integer or float)." ;
+ rdfs:subClassOf :format_2067,
+ :format_2330 .
+
+:format_1424 a owl:Class ;
+ rdfs:label "ClustalW dendrogram" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Dendrogram (tree file) format generated by ClustalW." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1425 a owl:Class ;
+ rdfs:label "Phylip tree raw" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Raw data file format used by Phylip from which a phylogenetic tree is directly generated or plotted." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1430 a owl:Class ;
+ rdfs:label "Phylip continuous quantitative characters" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PHYLIP file format for continuous quantitative character data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2037,
+ :format_2330 .
+
+:format_1431 a owl:Class ;
+ rdfs:label "Phylogenetic property values format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2036 ;
+ oboInOwl:hasDefinition "Format of phylogenetic property data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1432 a owl:Class ;
+ rdfs:label "Phylip character frequencies format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PHYLIP file format for phylogenetics character frequency data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2037,
+ :format_2330 .
+
+:format_1433 a owl:Class ;
+ rdfs:label "Phylip discrete states format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of PHYLIP discrete states data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2038,
+ :format_2330 .
+
+:format_1434 a owl:Class ;
+ rdfs:label "Phylip cliques format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of PHYLIP cliques data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2039,
+ :format_2330 .
+
+:format_1435 a owl:Class ;
+ rdfs:label "Phylip tree format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Phylogenetic tree data format used by the PHYLIP program." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1436 a owl:Class ;
+ rdfs:label "TreeBASE format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The format of an entry from the TreeBASE database of phylogenetic data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1437 a owl:Class ;
+ rdfs:label "TreeFam format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The format of an entry from the TreeFam database of phylogenetic data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1445 a owl:Class ;
+ rdfs:label "Phylip tree distance format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format for distances, such as Branch Score distance, between two or more phylogenetic trees as used by the Phylip package." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2049,
+ :format_2330 .
+
+:format_1454 a owl:Class ;
+ rdfs:label "dssp" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of an entry from the DSSP database (Dictionary of Secondary Structure in Proteins)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The DSSP database is built using the DSSP application which defines secondary structure, geometrical features and solvent exposure of proteins, given atomic coordinates in PDB format." ;
+ rdfs:subClassOf :format_2077,
+ :format_2330 .
+
+:format_1455 a owl:Class ;
+ rdfs:label "hssp" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Entry format of the HSSP database (Homology-derived Secondary Structure in Proteins)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2077,
+ :format_2330 .
+
+:format_1458 a owl:Class ;
+ rdfs:label "Vienna local RNA secondary structure format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of local RNA secondary structure components with free energy values, generated by the Vienna RNA package/server." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1457,
+ :format_2330 .
+
+:format_1477 a owl:Class ;
+ rdfs:label "mmCIF" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Entry format of PDB database in mmCIF format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1475,
+ :format_2330 .
+
+:format_1478 a owl:Class ;
+ rdfs:label "PDBML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Entry format of PDB database in PDBML (XML) format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1475,
+ :format_2332 .
+
+:format_1500 a owl:Class ;
+ rdfs:label "Domainatrix 3D-1D scoring matrix format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of a matrix of 3D-1D scores used by the EMBOSS Domainatrix applications." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_2064 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1504 a owl:Class ;
+ rdfs:label "aaindex" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Amino acid index format used by the AAindex database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2017,
+ :format_2330 .
+
+:format_1511 a owl:Class ;
+ rdfs:label "IntEnz enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from IntEnz (The Integrated Relational Enzyme Database)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "IntEnz is the master copy of the Enzyme Nomenclature, the recommendations of the NC-IUBMB on the Nomenclature and Classification of Enzyme-Catalysed Reactions." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1512 a owl:Class ;
+ rdfs:label "BRENDA enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the BRENDA enzyme database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1513 a owl:Class ;
+ rdfs:label "KEGG REACTION enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the KEGG REACTION database of biochemical reactions." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1514 a owl:Class ;
+ rdfs:label "KEGG ENZYME enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the KEGG ENZYME database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1515 a owl:Class ;
+ rdfs:label "REBASE proto enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the proto section of the REBASE enzyme database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1516 a owl:Class ;
+ rdfs:label "REBASE withrefm enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the withrefm section of the REBASE enzyme database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1551 a owl:Class ;
+ rdfs:label "Pcons report format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of output of the Pcons Model Quality Assessment Program (MQAP)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "Pcons ranks protein models by assessing their quality based on the occurrence of recurring common three-dimensional structural patterns. Pcons returns a score reflecting the overall global quality and a score for each individual residue in the protein reflecting the local residue quality." ;
+ rdfs:subClassOf :format_2065,
+ :format_2330 .
+
+:format_1552 a owl:Class ;
+ rdfs:label "ProQ report format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of output of the ProQ protein model quality predictor." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "ProQ is a neural network-based predictor that predicts the quality of a protein model based on the number of structural features." ;
+ rdfs:subClassOf :format_2065,
+ :format_2330 .
+
+:format_1563 a owl:Class ;
+ rdfs:label "SMART domain assignment report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of SMART domain assignment data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The SMART output file includes data on genetically mobile domains / analysis of domain architectures, including phyletic distributions, functional class, tertiary structures and functionally important residues." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1568 a owl:Class ;
+ rdfs:label "BIND entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the BIND database of protein interaction." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1569 a owl:Class ;
+ rdfs:label "IntAct entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the IntAct database of protein interaction." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1570 a owl:Class ;
+ rdfs:label "InterPro entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the InterPro database of protein signatures (sequence classifiers) and classified sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This includes signature metadata, sequence references and a reference to the signature itself. There is normally a header (entry accession numbers and name), abstract, taxonomy information, example proteins etc. Each entry also includes a match list which give a number of different views of the signature matches for the sequences in each InterPro entry." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1571 a owl:Class ;
+ rdfs:label "InterPro entry abstract format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the textual abstract of signatures in an InterPro entry and its protein matches." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "References are included and a functional inference is made where possible." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1572 a owl:Class ;
+ rdfs:label "Gene3D entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the Gene3D protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1573 a owl:Class ;
+ rdfs:label "PIRSF entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the PIRSF protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1574 a owl:Class ;
+ rdfs:label "PRINTS entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the PRINTS protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1575 a owl:Class ;
+ rdfs:label "Panther Families and HMMs entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the Panther library of protein families and subfamilies." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1576 a owl:Class ;
+ rdfs:label "Pfam entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the Pfam protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1577 a owl:Class ;
+ rdfs:label "SMART entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the SMART protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1578 a owl:Class ;
+ rdfs:label "Superfamily entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the Superfamily protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1579 a owl:Class ;
+ rdfs:label "TIGRFam entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the TIGRFam protein secondary database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1580 a owl:Class ;
+ rdfs:label "ProDom entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the ProDom protein domain classification database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1581 a owl:Class ;
+ rdfs:label "FSSP entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the FSSP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1582 a owl:Class ;
+ rdfs:label "findkm" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A report format for the kinetics of enzyme-catalysed reaction(s) in a format generated by EMBOSS findkm. This includes Michaelis Menten plot, Hanes Woolf plot, Michaelis Menten constant (Km) and maximum velocity (Vmax)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2027,
+ :format_2330 .
+
+:format_1603 a owl:Class ;
+ rdfs:label "Ensembl gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of Ensembl genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1604 a owl:Class ;
+ rdfs:label "DictyBase gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of DictyBase genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1605 a owl:Class ;
+ rdfs:label "CGD gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of Candida Genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1606 a owl:Class ;
+ rdfs:label "DragonDB gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of DragonDB genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1607 a owl:Class ;
+ rdfs:label "EcoCyc gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of EcoCyc genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1608 a owl:Class ;
+ rdfs:label "FlyBase gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of FlyBase genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1609 a owl:Class ;
+ rdfs:label "Gramene gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of Gramene genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1610 a owl:Class ;
+ rdfs:label "KEGG GENES gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of KEGG GENES genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1611 a owl:Class ;
+ rdfs:label "MaizeGDB gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Maize genetics and genomics database (MaizeGDB)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1612 a owl:Class ;
+ rdfs:label "MGD gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Mouse Genome Database (MGD)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1613 a owl:Class ;
+ rdfs:label "RGD gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Rat Genome Database (RGD)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1614 a owl:Class ;
+ rdfs:label "SGD gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Saccharomyces Genome Database (SGD)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1615 a owl:Class ;
+ rdfs:label "GeneDB gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Sanger GeneDB genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1616 a owl:Class ;
+ rdfs:label "TAIR gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of The Arabidopsis Information Resource (TAIR) genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1617 a owl:Class ;
+ rdfs:label "WormBase gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the WormBase genomes database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1618 a owl:Class ;
+ rdfs:label "ZFIN gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the Zebrafish Information Network (ZFIN) genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1619 a owl:Class ;
+ rdfs:label "TIGR gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format of the TIGR genome database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1620 a owl:Class ;
+ rdfs:label "dbSNP polymorphism report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the dbSNP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1623 a owl:Class ;
+ rdfs:label "OMIM entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the OMIM database of genotypes and phenotypes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1624 a owl:Class ;
+ rdfs:label "HGVbase entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of a record from the HGVbase database of genotypes and phenotypes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1625 a owl:Class ;
+ rdfs:label "HIVDB entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of a record from the HIVDB database of genotypes and phenotypes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1626 a owl:Class ;
+ rdfs:label "KEGG DISEASE entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the KEGG DISEASE database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1627 a owl:Class ;
+ rdfs:label "Primer3 primer" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Report format on PCR primers and hybridisation oligos as generated by Whitehead primer3 program." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2061,
+ :format_2330 .
+
+:format_1628 a owl:Class ;
+ rdfs:label "ABI" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "A format of raw sequence read data from an Applied Biosystems sequencing machine." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2057,
+ :format_2333 .
+
+:format_1629 a owl:Class ;
+ rdfs:label "mira" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of MIRA sequence trace information file." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2057,
+ :format_2330 .
+
+:format_1630 a owl:Class ;
+ rdfs:label "CAF" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Common Assembly Format (CAF). A sequence assembly format including contigs, base-call qualities, and other metadata." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2561 .
+
+:format_1631 a owl:Class ;
+ rdfs:label "EXP" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDefinition "Sequence assembly project file EXP format." ;
+ oboInOwl:hasExactSynonym "Affymetrix EXP format",
+ "EXP" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2561 .
+
+:format_1632 a owl:Class ;
+ rdfs:label "SCF" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Staden Chromatogram Files format (SCF) of base-called sequence reads, qualities, and other metadata." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2057,
+ :format_2333 .
+
+:format_1633 a owl:Class ;
+ rdfs:label "PHD" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "PHD sequence trace format to store serialised chromatogram data (reads)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2057,
+ :format_2330 .
+
+:format_1637 a owl:Class ;
+ rdfs:label "dat" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of Affymetrix data file of raw image data." ;
+ oboInOwl:hasExactSynonym "Affymetrix image data file format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_1714 ],
+ :format_2058,
+ :format_2330 .
+
+:format_1638 a owl:Class ;
+ rdfs:label "cel" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of Affymetrix data file of information about (raw) expression levels of the individual probes." ;
+ oboInOwl:hasExactSynonym "Affymetrix probe raw data format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_3110 ],
+ :format_2058,
+ :format_2330 .
+
+:format_1639 a owl:Class ;
+ rdfs:label "affymetrix" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of affymetrix gene cluster files (hc-genes.txt, hc-chips.txt) from hierarchical clustering." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2172,
+ :format_2330 .
+
+:format_1640 a owl:Class ;
+ rdfs:label "ArrayExpress entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the ArrayExpress microarrays database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1641 a owl:Class ;
+ rdfs:label "affymetrix-exp" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Affymetrix data file format for information about experimental conditions and protocols." ;
+ oboInOwl:hasExactSynonym "Affymetrix experimental conditions data file format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2056,
+ :format_2330 .
+
+:format_1644 a owl:Class ;
+ rdfs:label "CHP" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of Affymetrix data file of information about (normalised) expression levels of the individual probes." ;
+ oboInOwl:hasExactSynonym "Affymetrix probe normalised data format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_3111 ],
+ :format_2058,
+ :format_2330 .
+
+:format_1645 a owl:Class ;
+ rdfs:label "EMDB entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the Electron Microscopy DataBase (EMDB)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1647 a owl:Class ;
+ rdfs:label "KEGG PATHWAY entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG PATHWAY database of pathway maps for molecular interactions and reaction networks." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1648 a owl:Class ;
+ rdfs:label "MetaCyc entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the MetaCyc metabolic pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1649 a owl:Class ;
+ rdfs:label "HumanCyc entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of a report from the HumanCyc metabolic pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1650 a owl:Class ;
+ rdfs:label "INOH entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the INOH signal transduction pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1651 a owl:Class ;
+ rdfs:label "PATIKA entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the PATIKA biological pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1652 a owl:Class ;
+ rdfs:label "Reactome entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the reactome biological pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1653 a owl:Class ;
+ rdfs:label "aMAZE entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the aMAZE biological pathways and molecular interactions database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1654 a owl:Class ;
+ rdfs:label "CPDB entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the CPDB database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1655 a owl:Class ;
+ rdfs:label "Panther Pathways entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the Panther Pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1665 a owl:Class ;
+ rdfs:label "Taverna workflow format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of Taverna workflows." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2032,
+ :format_2332 .
+
+:format_1666 a owl:Class ;
+ rdfs:label "BioModel mathematical model format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of mathematical models from the BioModel database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "Models are annotated and linked to relevant data resources, such as publications, databases of compounds and pathways, controlled vocabularies, etc." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1697 a owl:Class ;
+ rdfs:label "KEGG LIGAND entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG LIGAND chemical database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1698 a owl:Class ;
+ rdfs:label "KEGG COMPOUND entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG COMPOUND database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1699 a owl:Class ;
+ rdfs:label "KEGG PLANT entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG PLANT database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1700 a owl:Class ;
+ rdfs:label "KEGG GLYCAN entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG GLYCAN database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1701 a owl:Class ;
+ rdfs:label "PubChem entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from PubChem." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1702 a owl:Class ;
+ rdfs:label "ChemSpider entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from a database of chemical structures and property predictions." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1703 a owl:Class ;
+ rdfs:label "ChEBI entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from Chemical Entities of Biological Interest (ChEBI)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "ChEBI includes an ontological classification defining relations between entities or classes of entities." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1704 a owl:Class ;
+ rdfs:label "MSDchem ligand dictionary entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the MSDchem ligand dictionary." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1705 a owl:Class ;
+ rdfs:label "HET group dictionary entry format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The format of an entry from the HET group dictionary (HET groups from PDB files)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2030,
+ :format_2330 .
+
+:format_1706 a owl:Class ;
+ rdfs:label "KEGG DRUG entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the KEGG DRUG database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1734 a owl:Class ;
+ rdfs:label "PubMed citation" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of bibliographic reference as used by the PubMed database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2848 .
+
+:format_1735 a owl:Class ;
+ rdfs:label "Medline Display Format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format for abstracts of scientific articles from the Medline database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "Bibliographic reference information including citation information is included" ;
+ rdfs:subClassOf :format_2330,
+ :format_2848 .
+
+:format_1736 a owl:Class ;
+ rdfs:label "CiteXplore-core" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "CiteXplore 'core' citation format including title, journal, authors and abstract." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2848 .
+
+:format_1737 a owl:Class ;
+ rdfs:label "CiteXplore-all" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "CiteXplore 'all' citation format includes all known details such as Mesh terms and cross-references." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2848 .
+
+:format_1739 a owl:Class ;
+ rdfs:label "pmc" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Article format of the PubMed Central database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2020,
+ :format_2330 .
+
+:format_1740 a owl:Class ;
+ rdfs:label "iHOP format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "The format of iHOP (Information Hyperlinked over Proteins) text-mining result." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:seeAlso ;
+ rdfs:subClassOf :format_2021,
+ :format_2331,
+ :format_2332 .
+
+:format_1741 a owl:Class ;
+ rdfs:label "OSCAR format" ;
+ :citation ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "OSCAR format of annotated chemical text." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "OSCAR (Open-Source Chemistry Analysis Routines) software performs chemistry-specific parsing of chemical documents. It attempts to identify chemical names, ontology concepts, and chemical data from a document." ;
+ rdfs:subClassOf :format_2330,
+ :format_2332,
+ :format_3780 .
+
+:format_1747 a owl:Class ;
+ rdfs:label "PDB atom record format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :format_1476 ;
+ oboInOwl:hasDefinition "Format of an ATOM record (describing data for an individual atom) from a PDB file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1760 a owl:Class ;
+ rdfs:label "CATH chain report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of CATH domain classification information for a polypeptide chain." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The report (for example http://www.cathdb.info/chain/1cukA) includes chain identifiers, domain identifiers and CATH codes for domains in a given protein chain." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1761 a owl:Class ;
+ rdfs:label "CATH PDB report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of CATH domain classification information for a protein PDB file." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "The report (for example http://www.cathdb.info/pdb/1cuk) includes chain identifiers, domain identifiers and CATH codes for domains in a given PDB file." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1782 a owl:Class ;
+ rdfs:label "NCBI gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry (gene) format of the NCBI database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1808 a owl:Class ;
+ rdfs:label "GeneIlluminator gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDbXref "Moby:GI_Gene" ;
+ oboInOwl:hasDefinition "Report format for biological functions associated with a gene name and its alternative names (synonyms, homonyms), as generated by the GeneIlluminator service." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:comment "This includes a gene name and abbreviation of the name which may be in a name space indicating the gene status and relevant organisation." ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1809 a owl:Class ;
+ rdfs:label "BacMap gene card format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDbXref "Moby:BacMapGeneCard" ;
+ oboInOwl:hasDefinition "Format of a report on the DNA and protein sequences for a given gene label from a bacterial chromosome maps from the BacMap database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1810 a owl:Class ;
+ rdfs:label "ColiCard report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of a report on Escherichia coli genes, proteins and molecules from the CyberCell Database (CCDB)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1861 a owl:Class ;
+ rdfs:label "PlasMapper TextMap" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Map of a plasmid (circular DNA) in PlasMapper TextMap format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2060,
+ :format_2330 .
+
+:format_1910 a owl:Class ;
+ rdfs:label "newick" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Phylogenetic tree Newick (text) format." ;
+ oboInOwl:hasExactSynonym "nh" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1911 a owl:Class ;
+ rdfs:label "TreeCon format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Phylogenetic tree TreeCon (text) format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1912 a owl:Class ;
+ rdfs:label "Nexus format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Phylogenetic tree Nexus (text) format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2556 .
+
+:format_1918 a owl:Class ;
+ rdfs:label "Atomic data format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :format_1475 ;
+ oboInOwl:hasDefinition "Data format for an individual atom." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1923 a owl:Class ;
+ rdfs:label "acedb" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "ACEDB sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1924 a owl:Class ;
+ rdfs:label "clustal sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1982 ;
+ oboInOwl:hasDefinition "Clustalw output format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1925 a owl:Class ;
+ rdfs:label "codata" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Codata entry format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1926 a owl:Class ;
+ rdfs:label "dbid" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Fasta format variant with database name before ID." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200 .
+
+:format_1928 a owl:Class ;
+ rdfs:label "Staden experiment format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Staden experiment file format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1929 a owl:Class ;
+ rdfs:label "FASTA" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "FASTA format including NCBI-style IDs." ;
+ oboInOwl:hasExactSynonym "FASTA format",
+ "FASTA sequence format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200,
+ :format_2554 .
+
+:format_1930 a owl:Class ;
+ rdfs:label "FASTQ" ;
+ :created_in "beta12orEarlier" ;
+ :file_extension "fastq",
+ "fq" ;
+ oboInOwl:hasDefinition "FASTQ short read format ignoring quality scores." ;
+ oboInOwl:hasExactSynonym "FASTAQ",
+ "fq" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2182 .
+
+:format_1932 a owl:Class ;
+ rdfs:label "FASTQ-sanger" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "FASTQ short read format with phred quality." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2182 .
+
+:format_1934 a owl:Class ;
+ rdfs:label "fitch program" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Fitch program format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1935 a owl:Class ;
+ rdfs:label "GCG" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "GCG sequence file format." ;
+ oboInOwl:hasExactSynonym "GCG SSF" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "GCG SSF (single sequence file) file format." ;
+ rdfs:subClassOf :format_2330,
+ :format_3486 .
+
+:format_1937 a owl:Class ;
+ rdfs:label "genpept" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Genpept protein entry format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "Currently identical to refseqp format" ;
+ rdfs:subClassOf :format_2205 .
+
+:format_1938 a owl:Class ;
+ rdfs:label "GFF2-seq" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "GFF feature file format with sequence in the header." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1974,
+ :format_2551 .
+
+:format_1939 a owl:Class ;
+ rdfs:label "GFF3-seq" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "GFF3 feature file format with sequence." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1975,
+ :format_2551 .
+
+:format_1940 a owl:Class ;
+ rdfs:label "giFASTA format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "FASTA sequence format including NCBI-style GIs." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200 .
+
+:format_1941 a owl:Class ;
+ rdfs:label "hennig86" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Hennig86 output sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1942 a owl:Class ;
+ rdfs:label "ig" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Intelligenetics sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1943 a owl:Class ;
+ rdfs:label "igstrict" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Intelligenetics sequence format (strict version)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1944 a owl:Class ;
+ rdfs:label "jackknifer" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Jackknifer interleaved and non-interleaved sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1945 a owl:Class ;
+ rdfs:label "mase format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Mase program sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1946 a owl:Class ;
+ rdfs:label "mega-seq" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Mega interleaved and non-interleaved sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1950 a owl:Class ;
+ rdfs:label "pdbatom" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PDB sequence format (ATOM lines)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "pdb format in EMBOSS." ;
+ rdfs:subClassOf :format_1475,
+ :format_2330,
+ :format_2551 .
+
+:format_1951 a owl:Class ;
+ rdfs:label "pdbatomnuc" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PDB nucleotide sequence format (ATOM lines)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "pdbnuc format in EMBOSS." ;
+ rdfs:subClassOf :format_1475,
+ :format_2330,
+ :format_2551 .
+
+:format_1952 a owl:Class ;
+ rdfs:label "pdbseqresnuc" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PDB nucleotide sequence format (SEQRES lines)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "pdbnucseq format in EMBOSS." ;
+ rdfs:subClassOf :format_1475,
+ :format_2330,
+ :format_2551 .
+
+:format_1953 a owl:Class ;
+ rdfs:label "pdbseqres" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "PDB sequence format (SEQRES lines)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "pdbseq format in EMBOSS." ;
+ rdfs:subClassOf :format_1475,
+ :format_2330,
+ :format_2551 .
+
+:format_1954 a owl:Class ;
+ rdfs:label "Pearson format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Plain old FASTA sequence format (unspecified format for IDs)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200 .
+
+:format_1955 a owl:Class ;
+ rdfs:label "phylip sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1997 ;
+ oboInOwl:hasDefinition "Phylip interleaved sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1956 a owl:Class ;
+ rdfs:label "phylipnon sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1998 ;
+ oboInOwl:hasDefinition "PHYLIP non-interleaved sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1957 a owl:Class ;
+ rdfs:label "raw" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Raw sequence format with no non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2571 .
+
+:format_1958 a owl:Class ;
+ rdfs:label "refseqp" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Refseq protein entry sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "Currently identical to genpept format" ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1959 a owl:Class ;
+ rdfs:label "selex sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2000 ;
+ oboInOwl:hasDefinition "Selex sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1960 a owl:Class ;
+ rdfs:label "Staden format" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ,
+ ;
+ oboInOwl:hasDbXref ,
+ ;
+ oboInOwl:hasDefinition "Staden suite sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1961 a owl:Class ;
+ rdfs:label "Stockholm format" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Stockholm multiple sequence alignment format (used by Pfam and Rfam)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_1962 a owl:Class ;
+ rdfs:label "strider format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DNA strider output sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1964 a owl:Class ;
+ rdfs:label "plain text format (unformatted)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Plain text sequence format (essentially unformatted)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330 .
+
+:format_1965 a owl:Class ;
+ rdfs:label "treecon sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2005 ;
+ oboInOwl:hasDefinition "Treecon output sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1966 a owl:Class ;
+ rdfs:label "ASN.1 sequence format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "NCBI ASN.1-based sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1967 a owl:Class ;
+ rdfs:label "DAS format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DAS sequence (XML) format (any type)." ;
+ oboInOwl:hasExactSynonym "das sequence format" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2332,
+ :format_2552 .
+
+:format_1968 a owl:Class ;
+ rdfs:label "dasdna" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "DAS sequence (XML) format (nucleotide-only)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The use of this format is deprecated." ;
+ rdfs:subClassOf :format_2332,
+ :format_2552 .
+
+:format_1969 a owl:Class ;
+ rdfs:label "debug-seq" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBOSS debugging trace sequence format of full internal data content." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1970 a owl:Class ;
+ rdfs:label "jackknifernon" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Jackknifer output sequence non-interleaved format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2551 .
+
+:format_1971 a owl:Class ;
+ rdfs:label "meganon sequence format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1992 ;
+ oboInOwl:hasDefinition "Mega non-interleaved output sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1972 a owl:Class ;
+ rdfs:label "NCBI format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "NCBI FASTA sequence format with NCBI-style IDs." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "There are several variants of this." ;
+ rdfs:subClassOf :format_2200 .
+
+:format_1976 a owl:Class ;
+ rdfs:label "pir" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.7" ;
+ oboInOwl:hasDefinition "PIR feature format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_1948 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1977 a owl:Class ;
+ rdfs:label "swiss feature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1963 ;
+ oboInOwl:hasDefinition "Swiss-Prot feature format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1979 a owl:Class ;
+ rdfs:label "debug-feat" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBOSS debugging trace feature format of full internal data content." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1920,
+ :format_2330 .
+
+:format_1980 a owl:Class ;
+ rdfs:label "EMBL feature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1927 ;
+ oboInOwl:hasDefinition "EMBL feature format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1981 a owl:Class ;
+ rdfs:label "GenBank feature" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1936 ;
+ oboInOwl:hasDefinition "Genbank feature format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1983 a owl:Class ;
+ rdfs:label "debug" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBOSS alignment format for debugging trace of full internal data content." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_1984 a owl:Class ;
+ rdfs:label "FASTA-aln" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Fasta format for (aligned) sequences." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2200,
+ :format_2554 .
+
+:format_1985 a owl:Class ;
+ rdfs:label "markx0" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Pearson MARKX0 alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2922 .
+
+:format_1986 a owl:Class ;
+ rdfs:label "markx1" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Pearson MARKX1 alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2922 .
+
+:format_1987 a owl:Class ;
+ rdfs:label "markx10" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Pearson MARKX10 alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2922 .
+
+:format_1988 a owl:Class ;
+ rdfs:label "markx2" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Pearson MARKX2 alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2922 .
+
+:format_1989 a owl:Class ;
+ rdfs:label "markx3" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Pearson MARKX3 alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2922 .
+
+:format_1990 a owl:Class ;
+ rdfs:label "match" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alignment format for start and end of matches between sequence pairs." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_1991 a owl:Class ;
+ rdfs:label "mega" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Mega format for (typically aligned) sequences." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2923 .
+
+:format_1993 a owl:Class ;
+ rdfs:label "msf alignment format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1947 ;
+ oboInOwl:hasDefinition "MSF format for (aligned) sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1994 a owl:Class ;
+ rdfs:label "nexus alignment format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1949 ;
+ oboInOwl:hasDefinition "Nexus/paup format for (aligned) sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1995 a owl:Class ;
+ rdfs:label "nexusnon alignment format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_1973 ;
+ oboInOwl:hasDefinition "Nexus/paup non-interleaved format for (aligned) sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_1996 a owl:Class ;
+ rdfs:label "pair" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBOSS simple sequence pair alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2554 .
+
+:format_1999 a owl:Class ;
+ rdfs:label "scores format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alignment format for score values for pairs of sequences." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_2001 a owl:Class ;
+ rdfs:label "EMBOSS simple format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBOSS simple multiple alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_2002 a owl:Class ;
+ rdfs:label "srs format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Simple multiple sequence (alignment) format for SRS." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_2003 a owl:Class ;
+ rdfs:label "srspair" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Simple sequence pair (alignment) format for SRS." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2920 .
+
+:format_2004 a owl:Class ;
+ rdfs:label "T-Coffee format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "T-Coffee program alignment format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2330,
+ :format_2554 .
+
+:format_2015 a owl:Class ;
+ rdfs:label "Sequence-profile alignment (HMM) format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2014 ;
+ oboInOwl:hasDefinition "Data format for a sequence-HMM profile alignment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2034 a owl:Class ;
+ rdfs:label "Biological model format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.2" ;
+ oboInOwl:consider :format_2013 ;
+ oboInOwl:hasDefinition "Data format for a biological model." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2040 a owl:Class ;
+ rdfs:label "Phylogenetic tree report (invariants) format" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format of phylogenetic invariants data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_1429 ],
+ :format_2036 .
+
+:format_2045 a owl:Class ;
+ rdfs:label "Electron microscopy model format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2350 ;
+ oboInOwl:hasDefinition "Annotation format for electron microscopy models." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2051 a owl:Class ;
+ rdfs:label "Polymorphism report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.0" ;
+ oboInOwl:consider :format_2921 ;
+ oboInOwl:hasDefinition "Format for sequence polymorphism data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2052 a owl:Class ;
+ rdfs:label "Protein family report format" ;
+ :created_in "beta12orEarlier" ;
+ :notRecommendedForAnnotation "true" ;
+ oboInOwl:hasDefinition "Format for reports on a protein family." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_0907 ],
+ :format_2350 .
+
+:format_2059 a owl:Class ;
+ rdfs:label "Genotype and phenotype annotation format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2350 ;
+ oboInOwl:hasDefinition "Format of a report on genotype / phenotype information." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2063 a owl:Class ;
+ rdfs:label "Protein report (enzyme) format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2350 ;
+ oboInOwl:hasDefinition "Format of a report of general information about a specific enzyme." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2159 a owl:Class ;
+ rdfs:label "Gene features (coding region) format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.10" ;
+ oboInOwl:hasDefinition "Format used for report on coding regions in nucleotide sequences." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_2031 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2171 a owl:Class ;
+ rdfs:label "Sequence cluster format (protein)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Format used for clusters of protein sequences." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2170 .
+
+:format_2175 a owl:Class ;
+ rdfs:label "Gene cluster format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :format_2172 ;
+ oboInOwl:hasDefinition "Format used for clusters of genes." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2183 a owl:Class ;
+ rdfs:label "EMBLXML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "XML format for EMBL entries." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2204 .
+
+:format_2184 a owl:Class ;
+ rdfs:label "cdsxml" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "XML format for EMBL entries." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2204 .
+
+:format_2185 a owl:Class ;
+ rdfs:label "insdxml" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "XML format for EMBL entries." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2204 .
+
+:format_2186 a owl:Class ;
+ rdfs:label "geneseq" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Geneseq sequence format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2181 .
+
+:format_2188 a owl:Class ;
+ rdfs:label "UniProt format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "UniProt entry sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_1963 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2189 a owl:Class ;
+ rdfs:label "ipi" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:consider :format_1963 ;
+ oboInOwl:hasDefinition "ipi sequence format." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2194 a owl:Class ;
+ rdfs:label "medline" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Abstract format used by MedLine database." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2020,
+ :format_2330 .
+
+:format_2202 a owl:Class ;
+ rdfs:label "Sequence record full format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Data format for a molecular sequence record, typically corresponding to a full entry from a molecular sequence database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_1919 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2203 a owl:Class ;
+ rdfs:label "Sequence record lite format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.8" ;
+ oboInOwl:hasDefinition "Data format for a molecular sequence record 'lite', typically molecular sequence and minimal metadata, such as an identifier of the sequence and/or a comment." ;
+ oboInOwl:inSubset edam:obsolete ;
+ oboInOwl:replacedBy :format_1919 ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2210 a owl:Class ;
+ rdfs:label "Strain data format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "1.0" ;
+ oboInOwl:consider :format_1915 ;
+ oboInOwl:hasDefinition "Format of a report on organism strain data / cell line." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2211 a owl:Class ;
+ rdfs:label "CIP strain data format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format for a report of strain data as used for CIP database entries." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2243 a owl:Class ;
+ rdfs:label "phylip property values" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2036 ;
+ oboInOwl:hasDefinition "PHYLIP file format for phylogenetic property data." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2303 a owl:Class ;
+ rdfs:label "STRING entry format (HTML)" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format (HTML) for the STRING database of protein interaction." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2304 a owl:Class ;
+ rdfs:label "STRING entry format (XML)" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Entry format (XML) for the STRING database of protein interaction." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2054,
+ :format_2332 .
+
+:format_2306 a owl:Class ;
+ rdfs:label "GTF" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ,
+ ;
+ oboInOwl:hasDefinition "Gene Transfer Format (GTF), a restricted version of GFF." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2305 .
+
+:format_2310 a owl:Class ;
+ rdfs:label "FASTA-HTML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "FASTA format wrapped in HTML elements." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2331,
+ :format_2546 .
+
+:format_2311 a owl:Class ;
+ rdfs:label "EMBL-HTML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "EMBL entry format wrapped in HTML elements." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2331,
+ :format_2543 .
+
+:format_2322 a owl:Class ;
+ rdfs:label "BioCyc enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the BioCyc enzyme database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2323 a owl:Class ;
+ rdfs:label "ENZYME enzyme report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of an entry from the Enzyme nomenclature database (ENZYME)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2328 a owl:Class ;
+ rdfs:label "PseudoCAP gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of a report on a gene from the PseudoCAP database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2329 a owl:Class ;
+ rdfs:label "GeneCards gene report format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Format of a report on a gene from the GeneCards database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2334 a owl:Class ;
+ rdfs:label "URI format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_1047 ;
+ oboInOwl:hasDefinition "Typical textual representation of a URI." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2341 a owl:Class ;
+ rdfs:label "NCI-Nature pathway entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "The format of an entry from the NCI-Nature pathways database." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2352 a owl:Class ;
+ rdfs:label "BioXSD (XML)" ;
+ :citation ,
+ ,
+ ;
+ :created_in "beta12orEarlier" ;
+ :documentation ,
+ ;
+ :example ,
+ ,
+ ,
+ ;
+ :ontology_used "Any ontology allowed, none mandatory. Preferrably with URIs but URIs are not mandatory. Non-ontology terms are also allowed as the last resort in case of a lack of suitable ontology." ;
+ :repository ;
+ oboInOwl:comment "'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioXSD in XML' is the XML format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'." ;
+ oboInOwl:hasBroadSynonym "BioXSD",
+ "BioXSD data model",
+ "BioXSD format",
+ "BioXSD/GTrack",
+ "BioXSD|BioJSON|BioYAML",
+ "BioXSD|GTrack" ;
+ oboInOwl:hasDbXref ,
+ ;
+ oboInOwl:hasDefinition "BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming." ;
+ oboInOwl:hasExactSynonym "BioXSD XML",
+ "BioXSD XML format",
+ "BioXSD in XML",
+ "BioXSD in XML format",
+ "BioXSD+XML" ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_1772 ],
+ [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_3108 ],
+ [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_0863 ],
+ [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_1255 ],
+ [ a owl:Restriction ;
+ owl:onProperty :is_format_of ;
+ owl:someValuesFrom :data_2044 ],
+ :format_1919,
+ :format_1920,
+ :format_2332,
+ :format_2555,
+ :format_2571 .
+
+:format_2532 a owl:Class ;
+ rdfs:label "GenBank-HTML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Genbank entry format wrapped in HTML elements." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2331,
+ :format_2559 .
+
+:format_2542 a owl:Class ;
+ rdfs:label "Protein features (domains) format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2350 ;
+ oboInOwl:hasDefinition "Format of a report on protein features (domain composition)." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2549 a owl:Class ;
+ rdfs:label "OBO" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "OBO ontology text format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2196,
+ :format_2330 .
+
+:format_2550 a owl:Class ;
+ rdfs:label "OBO-XML" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "OBO ontology XML format." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2196,
+ :format_2332 .
+
+:format_2560 a owl:Class ;
+ rdfs:label "STRING entry format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta12orEarlier" ;
+ oboInOwl:consider :format_2331 ;
+ oboInOwl:hasDefinition "Entry format for the STRING database of protein interaction." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2562 a owl:Class ;
+ rdfs:label "Amino acid identifier format" ;
+ :created_in "beta12orEarlier" ;
+ :obsolete_since "beta13" ;
+ oboInOwl:consider :data_0994 ;
+ oboInOwl:hasDefinition "Text format (representation) of amino acid residues." ;
+ oboInOwl:inSubset edam:obsolete ;
+ rdfs:subClassOf owl:DeprecatedClass ;
+ owl:deprecated "true" .
+
+:format_2568 a owl:Class ;
+ rdfs:label "completely unambiguous pure nucleotide" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for a nucleotide sequence (characters ACGTU only) without unknown positions, ambiguity or non-sequence characters ." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1207,
+ :format_2567 .
+
+:format_2569 a owl:Class ;
+ rdfs:label "completely unambiguous pure dna" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for a DNA sequence (characters ACGT only) without unknown positions, ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1212,
+ :format_2567 .
+
+:format_2570 a owl:Class ;
+ rdfs:label "completely unambiguous pure rna sequence" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for an RNA sequence (characters ACGU only) without unknown positions, ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1213,
+ :format_2567 .
+
+:format_2572 a owl:Class ;
+ rdfs:label "BAM" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "BAM format, the binary, BGZF-formatted compressed version of SAM format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2057,
+ :format_2333,
+ :format_2920 .
+
+:format_2573 a owl:Class ;
+ rdfs:label "SAM" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project." ;
+ rdfs:subClassOf :format_2057,
+ :format_2330,
+ :format_2920 .
+
+:format_2585 a owl:Class ;
+ rdfs:label "SBML" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Systems Biology Markup Language (SBML), the standard XML format for models of biological processes such as for example metabolism, cell signaling, and gene regulation." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2013,
+ :format_2332 .
+
+:format_2607 a owl:Class ;
+ rdfs:label "completely unambiguous pure protein" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "Alphabet for any protein sequence without unknown positions, ambiguity or non-sequence characters." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_1208,
+ :format_2567 .
+
+:format_3000 a owl:Class ;
+ rdfs:label "AB1" ;
+ :created_in "beta12orEarlier" ;
+ oboInOwl:hasDefinition "AB1 binary format of raw DNA sequence reads (output of Applied Biosystems' sequencing analysis software). Contains an electropherogram and the DNA base sequence." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:comment "AB1 uses the generic binary Applied Biosystems, Inc. Format (ABIF)." ;
+ rdfs:subClassOf :format_2057,
+ :format_2333 .
+
+:format_3001 a owl:Class ;
+ rdfs:label "ACE" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "ACE sequence assembly format including contigs, base-call qualities, and other metadata (version Aug 1998 and onwards)." ;
+ oboInOwl:inSubset edam:edam,
+ edam:formats ;
+ rdfs:subClassOf :format_2055,
+ :format_2330 .
+
+:format_3004 a owl:Class ;
+ rdfs:label "bigBed" ;
+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "bigBed format for large sequence annotation tracks, similar to textual BED format." ;
+ oboInOwl:inSubset edam:edam,
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+ :documentation ;
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+ :documentation ;
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+ oboInOwl:hasDbXref ,
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+ oboInOwl:hasDefinition "2bit binary format of nucleotide sequences using 2 bits per nucleotide. In addition encodes unknown nucleotides and lower-case 'masking'." ;
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+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
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+ :created_in "beta12orEarlier" ;
+ :documentation ;
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+ :created_in "beta12orEarlier" ;
+ :documentation ;
+ oboInOwl:hasDbXref ;
+ oboInOwl:hasDefinition "Personal Genome SNP (pgSnp) format for sequence variation tracks (indels and polymorphisms), supported by the UCSC Genome Browser." ;
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+ :created_in "beta12orEarlier" ;
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+ oboInOwl:hasExactSynonym "BioXSD/GTrack GTrack",
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+ :documentation ;
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