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infant-gut.state
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infant-gut.state
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{
"version": "0.2.1",
"tree-type": "circlephylogram",
"order-by": "tnf-cov:euclidean:ward",
"current-view": "mean_coverage",
"angle-min": "0",
"angle-max": "270",
"tree-radius": "2000",
"tree-height": "0",
"tree-width": "0",
"layer-margin": "15",
"outer-ring-height": "250",
"edge-normalization": false,
"custom-layer-margin": true,
"show-grid-for-bins": true,
"grid-color": "#fafafa",
"grid-width": "1",
"samples-order": "custom",
"max-font-size": "60",
"optimize-speed": true,
"layer-order": [
"__parent__",
"avg_gene_length",
"ratio_coding",
"length",
"gc_content",
"DAY_15A",
"DAY_15B",
"DAY_16",
"DAY_17A",
"DAY_17B",
"DAY_18",
"DAY_19",
"DAY_22A",
"DAY_22B",
"DAY_23",
"DAY_24",
"CONCOCT",
"GROOPM",
"MAXBIN",
"METABAT",
"SHARON_et_al",
"num_genes",
"anvio",
"binsanity",
"mycc"
],
"categorical_data_colors": {
"CONCOCT": {
"Bin_28": "#0c8e56",
"Bin_30": "#e2f9a7",
"Bin_10": "#f00000",
"Bin_7": "#f5fcae",
"Bin_15": "#81e57b",
"Bin_18": "#ea2042",
"Bin_26": "#7fe289",
"Bin_12": "#b04f00",
"Bin_13": "#62f957",
"Bin_11": "#079aef",
"Bin_16": "#d1ef64",
"Bin_31": "#e08608",
"Bin_14": "#c9d433",
"Bin_6": "#a589e8",
"Bin_4": "#517c9c",
"Bin_37": "#c336e2",
"Bin_5": "#e86548",
"Bin_9": "#0062d1",
"Bin_17": "#e2b100",
"Bin_8": "#0b8500",
"Bin_21": "#fcf3ab",
"Bin_3": "#98f5f0",
"Bin_27": "#e8ca25",
"Bin_25": "#4ece6c",
"Bin_38": "#5435a8",
"Bin_19": "#bcffa8",
"Bin_33": "#fceac4",
"Bin_20": "#0d017c",
"Bin_36": "#ff8a5b",
"Bin_1": "#b87dd8",
"Bin_24": "#04147a",
"Bin_2": "#a5121e",
"Bin_23": "#f7d6a5",
"Bin_22": "#b318e2",
"Bin_35": "#82e5ab",
"Bin_32": "#d81316",
"Bin_34": "#f4de8d",
"Bin_29": "#0dd88e"
},
"GROOPM": {
"db_unbinned": "#ffffff",
"db_bin_40": "#f2597a",
"db_bin_13": "#f00000",
"db_bin_3": "#f5fcae",
"db_bin_45": "#58f46f",
"db_bin_47": "#ffff91",
"db_bin_22": "#b04f00",
"db_bin_2": "#079aef",
"db_bin_12": "#a169bf",
"db_bin_27": "#c9d433",
"db_bin_33": "#a589e8",
"db_bin_20": "#345599",
"db_bin_51": "#5be575",
"db_bin_50": "#74aa27",
"db_bin_10": "#fcabc2",
"db_bin_11": "#517c9c",
"db_bin_37": "#e86548",
"db_bin_46": "#f975dd",
"db_bin_5": "#0b8500",
"db_bin_8": "#98f5f0",
"db_bin_7": "#62f957",
"db_bin_31": "#e2787a",
"db_bin_1": "#b87dd8",
"db_bin_44": "#5e54bf",
"db_bin_48": "#26268e"
},
"MAXBIN": {
"maxbin.001": "#f00000",
"maxbin.004": "#f5fcae",
"maxbin.006": "#62f957",
"maxbin.005": "#b04f00",
"maxbin.003": "#079aef",
"maxbin.002": "#c9d433",
"maxbin.008": "#98f5f0",
"maxbin.007": "#0b8500",
"maxbin.009": "#b87dd8"
},
"METABAT": {
"metabat_igm.1": "#f00000",
"metabat_igm.unbinned": "#ffffff",
"metabat_igm.2": "#f5fcae",
"metabat_igm.6": "#62f957",
"metabat_igm.5": "#b04f00",
"metabat_igm.3": "#079aef",
"metabat_igm.4": "#c9d433",
"metabat_igm.9": "#0b8500",
"metabat_igm.10": "#98f5f0",
"metabat_igm.8": "#029187",
"metabat_igm.7": "#b87dd8"
},
"SHARON_et_al": {
"Enterococcus_faecalis": "#f00000",
"Enterococcus_faecalis_P1": "#8979ea",
"Staphylococcus_epidermidis_strain_3_P": "#85dd66",
"Staphylococcus_epidermidis_strain_3": "#f5fcae",
"Staphylococcus_epidermidis_strain_1": "#f5fcae",
"Staphylococcus_hominis": "#62f957",
"Staphylococcus_epidermidis_virus_013": "#f4ed6b",
"Staphylococcus_epidermidis_misc_01": "#d865d4",
"Staphylococcus_epidermidis_P": "#9ea4e2",
"Propionibacterium_sp": "#b04f00",
"null": "#ffffff",
"Staphylococcus_aureus": "#079aef",
"Staphylococcus_aureus_strain_2": "#56eaa0",
"Staphylococcus_aureus_P1": "#ff51a2",
"Peptoniphilus_sp_Carrol": "#c9d433",
"Streptococcus_sp": "#a589e8",
"Finegoldia_magna": "#517c9c",
"Anaerococcus_sp": "#e86548",
"Propionibacterium_acnes": "#0062d1",
"Staphylococcus_epidermidis_misc_02": "#f5fcae",
"Staphylococcus_lugdunensis": "#0b8500",
"Staphylococcus_aureus_virus": "#67009b",
"Leuconostoc_citreum": "#98f5f0",
"Staphylococcus_epidermidis_strain_4": "#f5fca9",
"Enterococcus_faecalis_P2": "#f00000",
"Candida_albcans": "#b87dd8",
"Staphylococcus_epidermidis_viruses": "#36c949",
"Staphylococcus_epidermidis_virus_014": "#d35250",
"Staphylococcus_epidermidis_strain_1_P": "#9b82dd",
"Staphylococcus_epidermidis_virus_4-6": "#d672ea",
"Staphylococcus_epidermidis_strain_4_P": "#dce261",
"Propionibacterium_sp_virus": "#b7ed76"
},
"anvio": {
"E_faecalis-contigs.fa": "#f00000",
"unbinned.fa": "#FFFFFF",
"S_epidermidis_pan-contgis.fa": "#f5fcae",
"P_avidum-contigs.fa": "#b04f00",
"S_aureus-contigs.fa": "#079aef",
"P_rhinitidis-contgis.fa": "#c9d433",
"S_pneumoniae-contigs.fa": "#a589e8",
"F_magna-contigs.fa": "#517c9c",
"P_acnes-contigs.fa": "#0062d1",
"Anaerococcus_sp-contgis.fa": "#e86548",
"S_hominis-contigs.fa": "#62f957",
"S_lugdunensis-contigs.fa": "#0b8500",
"L_citreum-contigs.fa": "#98f5f0",
"C_albicans-contigs.fa": "#b87dd8"
},
"binsanity": {
"INFANT-GUT-ASSEMBLY-bin_0.fna": "#88ea8e",
"INFANT-GUT-ASSEMBLY-bin_1.fna": "#f00000",
"INFANT-GUT-ASSEMBLY-bin_3.fna": "#f5fcae",
"INFANT-GUT-ASSEMBLY-bin_4.fna": "#efb8ae",
"INFANT-GUT-ASSEMBLY-bin_12.fna": "#d28df4",
"INFANT-GUT-ASSEMBLY-bin_10.fna": "#f44479",
"INFANT-GUT-ASSEMBLY-bin_8.fna": "#b04f00",
"INFANT-GUT-ASSEMBLY-bin_16.fna": "#98f5f0",
"INFANT-GUT-ASSEMBLY-bin_2.fna": "#079aef",
"INFANT-GUT-ASSEMBLY-bin_7.fna": "#d1ef64",
"INFANT-GUT-ASSEMBLY-bin_5.fna": "#c9d433",
"INFANT-GUT-ASSEMBLY-bin_21.fna": "#a589e8",
"INFANT-GUT-ASSEMBLY-bin_19.fna": "#517c9c",
"INFANT-GUT-ASSEMBLY-bin_18.fna": "#e86548",
"INFANT-GUT-ASSEMBLY-bin_9.fna": "#62f957",
"INFANT-GUT-ASSEMBLY-bin_15.fna": "#0b8500",
"INFANT-GUT-ASSEMBLY-bin_13.fna": "#29bc69",
"INFANT-GUT-ASSEMBLY-bin_6.fna": "#e592a6",
"INFANT-GUT-ASSEMBLY-bin_17.fna": "#cf3de2",
"INFANT-GUT-ASSEMBLY-bin_14.fna": "#b87dd8",
"INFANT-GUT-ASSEMBLY-bin_20.fna": "#4440b7",
"INFANT-GUT-ASSEMBLY-bin_11.fna": "#e8331b"
},
"mycc": {
"Cluster.17.fasta": "#f00000",
"Cluster.11.fasta": "#f5fcae",
"Cluster.3.fasta": "#62f957",
"Cluster.13.fasta": "#d1ef64",
"Cluster.18.fasta": "#b04f00",
"Cluster.10.fasta": "#c9d433",
"Cluster.5.fasta": "#e86548",
"Cluster.2.fasta": "#a589e8",
"Cluster.12.fasta": "#b87dd8",
"Cluster.15.fasta": "#0b8500",
"Cluster.7.fasta": "#a5a7f7",
"Cluster.16.fasta": "#b6fc8d",
"Cluster.9.fasta": "#0062d1",
"Cluster.14.fasta": "#98f5f0",
"Cluster.6.fasta": "#fc25d5",
"Cluster.1.fasta": "#214e89",
"Cluster.8.fasta": "#f9a08e",
"Cluster.4.fasta": "#ea70c1"
}
},
"stack_bar_colors": {},
"layers": {
"num_genes": {
"color": "#414141",
"height": "0",
"margin": "90",
"type": "bar",
"color-start": "#FFFFFF"
},
"avg_gene_length": {
"color": "#414141",
"height": "0",
"margin": "0",
"type": "bar",
"color-start": "#FFFFFF"
},
"ratio_coding": {
"color": "#414141",
"height": "0",
"margin": "0",
"type": "bar",
"color-start": "#FFFFFF"
},
"length": {
"color": "#414141",
"height": "80",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"gc_content": {
"color": "#004a0f",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_15A": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_15B": {
"color": "#000000",
"height": "0",
"margin": "0",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_16": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_17A": {
"color": "#000000",
"height": "0",
"margin": "0",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_17B": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_18": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_19": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_22A": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_22B": {
"color": "#000000",
"height": "0",
"margin": "0",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_23": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"DAY_24": {
"color": "#000000",
"height": "180",
"margin": "15",
"type": "bar",
"color-start": "#FFFFFF"
},
"__parent__": {
"height": "50",
"margin": "15"
},
"CONCOCT": {
"color": "#000000",
"height": "250",
"margin": "90",
"type": "color",
"color-start": "#DDDDDD"
},
"GROOPM": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"MAXBIN": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"METABAT": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"SHARON_et_al": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"anvio": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"binsanity": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
},
"mycc": {
"color": "#000000",
"height": "250",
"margin": "15",
"type": "color",
"color-start": "#DDDDDD"
}
},
"views": {
"mean_coverage": {
"num_genes": {
"normalization": "none",
"min": {
"value": "0",
"disabled": false
},
"max": {
"value": "53",
"disabled": false
}
},
"avg_gene_length": {
"normalization": "none",
"min": {
"value": "0",
"disabled": false
},
"max": {
"value": "12393",
"disabled": false
}
},
"ratio_coding": {
"normalization": "none",
"min": {
"value": "0",
"disabled": false
},
"max": {
"value": "1.1034271725826192",
"disabled": false
}
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