started pipeline when updating notebooks #26
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - bids23 | |
| paths: | |
| # Only rebuild website when apps have changed | |
| - 'water-bodies/**' | |
| - .github/** | |
| - docs/** | |
| - cwl-workflow/*.cwl | |
| - codemeta.json | |
| - practice-labs/** | |
| jobs: | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.x | |
| - run: pip install cwltool | |
| - run: cwltool --validate cwl-workflow/app-water-body-cloud-native.cwl | |
| version: | |
| needs: validate | |
| runs-on: ubuntu-latest | |
| outputs: | |
| app-version: ${{ steps.set-version.outputs.version }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - run: echo "APP_VERSION=$(cat codemeta.json | jq -r .version )" >> $GITHUB_ENV | |
| - run: echo app version is $APP_VERSION | |
| - id: set-version | |
| run: echo "::set-output name=version::$APP_VERSION" | |
| container-build: | |
| needs: version | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - run: echo version ${{needs.version.outputs.app-version}} | |
| - run: echo "${{ secrets.GITHUB_TOKEN }}" | docker login ghcr.io -u ${{ github.actor }} --password-stdin | |
| - name: build & push image | |
| run: | | |
| IMAGE_ID=ghcr.io/eoap/quickwin/detect-water-body | |
| docker build water-bodies/command-line-tools/detect-water-body --file water-bodies/command-line-tools/detect-water-body/Dockerfile --tag detect-water-body | |
| docker tag detect-water-body $IMAGE_ID:${{needs.version.outputs.app-version}} | |
| docker push $IMAGE_ID:${{needs.version.outputs.app-version}} | |
| create-release: | |
| needs: | |
| - container-build | |
| - version | |
| runs-on: ubuntu-latest | |
| outputs: | |
| upload_url: ${{ steps.set-upload-url.outputs.upload_url }} | |
| steps: | |
| - name: release | |
| uses: actions/create-release@v1 | |
| id: create_release | |
| with: | |
| draft: false | |
| prerelease: false | |
| release_name: ${{needs.version.outputs.app-version}} | |
| tag_name: ${{needs.version.outputs.app-version}} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| - id: set-upload-url | |
| run: echo "::set-output name=upload_url::${{ steps.create_release.outputs.upload_url }}" | |
| publish-artifacts: | |
| needs: | |
| - create-release | |
| - version | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - run: | | |
| tag="ghcr.io/eoap/quickwin/detect-water-body:${{needs.version.outputs.app-version}}" | |
| docker pull ${tag} | |
| shatag=$( docker inspect ${tag} | yq -r '.[0]["RepoDigests"][0]' ) | |
| s="detect-water-body" t="${shatag}" yq -i eval '(.$graph[] | select (.id == env(s)) ).hints.DockerRequirement.dockerPull = env(t)' cwl-workflow/app-water-body-cloud-native.cwl | |
| - run: | | |
| r=$( cat codemeta.json | jq -r ".codeRepository" ) yq -i eval '."s:codeRepository" = {"URL" : env(r)}' cwl-workflow/app-water-body-cloud-native.cwl | |
| v="${{needs.version.outputs.app-version}}" yq -i eval '."s:softwareVersion" = env(v)' cwl-workflow/app-water-body-cloud-native.cwl | |
| n=$(cat codemeta.json | jq -r '(.author[0].givenName + " " + .author[0].familyName)') \ | |
| e=$(cat codemeta.json | jq -r '.author[0].email') \ | |
| a=$(cat codemeta.json | jq -r '.author[0].affiliation["name"]') \ | |
| yq eval -i '."s:author" += [{"class": "s:Person", "s.name": env(n), "s.email": env(e), "s.affiliation": env(a)}]' cwl-workflow/app-water-body-cloud-native.cwl | |
| - run: | | |
| mkdir downloads | |
| cp cwl-workflow/app-water-body-cloud-native.cwl downloads/app-water-body-cloud-native.${{needs.version.outputs.app-version}}.cwl | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: application-package | |
| path: downloads | |
| - name: upload linux artifact 1 | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| with: | |
| upload_url: ${{needs.create-release.outputs.upload_url}} | |
| asset_path: downloads/app-water-body-cloud-native.${{needs.version.outputs.app-version}}.cwl | |
| asset_name: app-water-body-cloud-native.${{needs.version.outputs.app-version}}.cwl | |
| asset_content_type: text/yaml |