Update tool DESI Legacy Survey to 0.0.1+galaxy0 #425
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| name: Preview PR on galaxy.odahub.fr | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| types: | |
| - opened | |
| - labeled | |
| - synchronize | |
| - unlabeled | |
| - closed | |
| paths-ignore: | |
| - '.github/**' | |
| - 'deprecated/**' | |
| - 'docs/**' | |
| - '*' | |
| env: | |
| GALAXY_FORK: galaxyproject | |
| GALAXY_BRANCH: release_23.1 | |
| jobs: | |
| setup: | |
| if: contains( github.event.pull_request.labels.*.name, 'test-live') && github.event.action != 'closed' | |
| name: Determine changed repositories | |
| runs-on: ubuntu-latest | |
| outputs: | |
| tool-list: ${{ steps.discover.outputs.tool-list }} | |
| steps: | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.8" | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Fake a Planemo run to determine tool list | |
| uses: galaxyproject/planemo-ci-action@v1 | |
| id: discover | |
| with: | |
| galaxy-fork: ${{ env.GALAXY_FORK }} | |
| galaxy-branch: ${{ env.GALAXY_BRANCH }} | |
| python-version: "3.7" | |
| - name: Show tool list | |
| run: echo '${{ steps.discover.outputs.tool-list }}' | |
| # deploy the tools | |
| deploy: | |
| name: Deploy | |
| if: contains( github.event.pull_request.labels.*.name, 'test-live') && needs.setup.outputs.tool-list | |
| needs: setup | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install requirenments | |
| run: sudo apt-get install -y ansible | |
| - name: Install SSH key | |
| uses: shimataro/ssh-key-action@v2 | |
| with: | |
| key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| known_hosts: ${{ secrets.KNOWN_HOSTS }} | |
| - name: Deploy tools | |
| env: | |
| TOOL_LIST: ${{ needs.setup.outputs.tool-list }} | |
| pr_num: ${{ github.event.pull_request.number }} | |
| run: | | |
| cd deploy-preview | |
| dir_list=`for tl in $TOOL_LIST ; do echo $tl | awk -F '/' '{for(i=2;i<=(NF-1);i++) printf("%s%s",$i,i==(NF-1)?" ":FS)}'; done | uniq` | |
| for dr in $dir_list; do | |
| tools_list=`for tl in $TOOL_LIST; do if [[ "$tl" == *"$dr"* ]] ; then basename $tl ; fi ; done` | |
| export tools_list | |
| export tool_dir=$dr | |
| ansible-playbook deploy.yml | |
| done | |
| uninstall: | |
| name: Uninstall | |
| if: contains( github.event.pull_request.labels.*.name, 'test-live') == false || github.event.action == 'closed' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install requirenments | |
| run: sudo apt-get install -y ansible | |
| - name: Install SSH key | |
| uses: shimataro/ssh-key-action@v2 | |
| with: | |
| key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| known_hosts: ${{ secrets.KNOWN_HOSTS }} | |
| - name: Uninstall tools | |
| env: | |
| pr_num: ${{ github.event.pull_request.number }} | |
| run: | | |
| cd deploy-preview | |
| ansible-playbook remove.yml |