pyproject.toml

[tool.poetry]
name = "omnipy"
version = "0.19.0"
description = "Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)"
license = "Apache-2.0"
repository = "http://github.com/fairtracks/omnipy"
authors = ["Sveinung Gundersen <sveinugu@gmail.com>", "Federico Bianchini <fredebi@uio.no>", "Ahmed Ghanem <ahmedg@uio.no>", "Joshua Baskaran <joshuaba@uio.no>"]
readme = "README.md"
homepage = "https://fairtracks.net/fair/#fair-07-transformation"
documentation = "http://omnipy.readthedocs.io/"
keywords = ["data wrangling", "metadata", "workflows", "etl", "research data", "prefect", "pydantic", "FAIR", "ontologies", "JSON", "tabular", "type-driven", "orchestration", "data models", "universal"]
classifiers = ["Development Status :: 2 - Pre-Alpha", "Framework :: Pydantic", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Programming Language :: Python :: 3.10", "Topic :: Software Development :: Libraries"]
packages = [{include = "omnipy", from = "src"}]


[tool.poetry.dependencies]
python = ">=3.10,<3.13"
#python = ">=3.8.1,<4.0"
#pendulum = "^3.0.0b1"
aiostream = "^0.4.5"
#greenlet = "2.0.2"
inflection = "^0.5.1"
pandas = "<2.2"
prefect = ">2.13.2,<3"
pytest-asyncio = "^0.20.2"
pytest-cases = "^3.6.13"

# To be removed
requests = "^2.25.1"

# Potential dependencies
#dpath = "^2.1.0"
#beartype = "^0.11.0"
#typing-extensions = "^4.4.0"
#phantom-types = "^1.1.0"
#orjson = "^3.8.0"
#python-slugify = "^7.0.0"
isort = "^5.12.0"
chardet = "^5.2.0"
pathspec = "0.12.1"
devtools = "^0.12.2"
objsize = "^0.7.0"
humanize = "^4.9.0"
pydantic = {version = "<2", extras = ["email"]}
griffe = "<1"
ipython = ">=7.34.0"
pydantic-core = "^2.24.2"
aiohttp = "^3.10.6"
aiohttp-retry = "^2.9.0"
aiolimiter = "^1.1.0"

[tool.poetry.group.dev.dependencies]
deepdiff = "^6.2.1"
pytest = "^7.1.0"
pytest-pycharm = "^0.7.0"
types-python-slugify = "^8.0.0.1"
types-requests = "^2.28.11.15"
pandas-stubs = "^2.1.1.230928"
pre-commit = "^3.8.0"
pytest-mypy-plugins = "^3.1.2"
devtools = "^0.12.2"
mypy = "^1.13.0"
pytest-aiohttp = "^1.0.5"
pyright = "^1.1.389"

[tool.poetry.group.docs.dependencies]
pymdown-extensions = "^10.0.1"
mkdocs = "^1.5.3"
mkdocstrings = {version = ">=0.26.1", extras=["python"]}
mkdocs-gen-files = "^0.5.0"
mkdocs-literate-nav = "^0.6.1"
mkdocs-section-index = "^0.3.8"
mkdocs-material = "^9.4.6"
mdx-truly-sane-lists = "^1.3"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.setuptools.package-data]
"omnipy" = ["py.typed"]

[tool.setuptools.packages.find]
where = ["src"]

[tool.yapf]
allow_split_before_dict_value = true
based_on_style = "google"
align_closing_bracket_with_visual_indent = true
blank_line_before_nested_class_or_def = false
column_limit = 100
indent_dictionary_value = true
join_multiple_lines = true
split_all_comma_separated_values = false
split_all_top_level_comma_separated_values = true
split_before_expression_after_opening_paren = true
split_before_bitwise_operator = true
split_before_logical_operator = true
split_before_arithmetic_operator = true

[tool.isort]
profile = "google"
force_single_line = false
multi_line_output = 1
src_paths = ["src/omnipy", "tests"]
line_length = 100

[flows]
checkpointing = true

[tool.mypy]
# Adapted from https://quantlane.com/blog/type-checking-large-codebase/

# General

python_version = "3.10"
mypy_path = "src:tests"

ignore_missing_imports = true
follow_imports = "silent"

# Ensure full coverage
#disallow_untyped_calls = true
#disallow_untyped_defs = true
#disallow_incomplete_defs = true
#disallow_untyped_decorators = true
#check_untyped_defs = true

# Restrict dynamic typing
#disallow_any_generics = true
#disallow_subclassing_any = true
#warn_return_any = true

# Know exactly what you're doing
warn_redundant_casts = true
warn_unused_ignores = true
warn_unused_configs = true
warn_unreachable = false
show_error_codes = true

# Explicit is better than implicit
no_implicit_optional = true

# Others
warn_no_return = false
disable_error_code = ["empty-body"]
#show_column_numbers = true
error_summary = true
verbosity = 0
#no_implicit_reexport = true

#plugins = [
#  "pydantic.mypy"
#]

[[tool.mypy.overrides]]
module = "tests.*"
# pytest decorators are not typed
disallow_untyped_decorators = false

#[[tool.mypy.overrides]]
#module = "firstmodule.*"
#ignore_missing_imports = true
#follow_imports = 'silent'

#[tool.pydantic-mypy]
##init_forbid_extra = true
#init_typed = false
#warn_required_dynamic_aliases = true

[tool.pyright]
reportFunctionMemberAccess = 'warning'
reportUnusedExpression = 'none'

[tool.pytest.ini_options]
addopts = "--tb=native"
testpaths = [
    "tests",
]
asyncio_mode = "auto"


[tool.portray]
docs_dir = "docs/portray"
directory = "."

[tool.portray.pdocs]
template_dir = "docs/templates/pdocs"

[project]
dependencies = [
    "mkdocstrings[python]>=0.18",
]