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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 639 370

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 304 77

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 302 79

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 252 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 144 89

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 114 21

Repositories

Showing 10 of 179 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 82 MIT 8 92 4 Updated Nov 22, 2024
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 7 GPL-3.0 1 3 0 Updated Nov 22, 2024
  • figurl Public

    Shareable, interactive scientific figures in the cloud

    flatironinstitute/figurl’s past year of commit activity
    Python 33 Apache-2.0 4 2 0 Updated Nov 22, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 6 MIT 0 17 3 Updated Nov 21, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 45 Apache-2.0 6 55 1 Updated Nov 21, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 79 35 2 0 Updated Nov 21, 2024
  • FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.

    flatironinstitute/FMM3D’s past year of commit activity
    Fortran 100 38 21 1 Updated Nov 21, 2024
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 40 Apache-2.0 9 9 2 Updated Nov 21, 2024
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 36 Apache-2.0 1 19 2 Updated Nov 20, 2024
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 639 GPL-2.0 370 74 (1 issue needs help) 9 Updated Nov 20, 2024
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