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FAIM-Jetraw Workflows

License

Jetraw compression workflows used in the facility for advanced mircoscopy and imaging (FAIM) at the Friedrich Miescher Institute for biomedial research.

Installation

We recommend creating a new conda environment with

conda create --name jrc python=3.8

Then install pyJetRaw and DpCore into the freshly create conda env.

Note: Linux users export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path_to_jetraw_folder/lib/

Finally install this package with

pip install git+https://github.com/fmi-faim/faim-jetraw

Usage

TODO

Development

Install test requirements with

pip install -r requirements.txt

To run pre-commit hooks install

pip install pre-commit
pre-commit install

License

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this software except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0.

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

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