fetchNOMe R package provides functionality for fast retrieval of NOMe-seq data (M.CviPI-induced GpC methylation as well as endogenous CpG methylation) from BAM files generated by pipelines for alignment of bisulfite converted cytosine methylation data.
You can install the development version of fetchNOMe from GitHub with:
# install.packages("devtools")
devtools::install_github("fmi-basel/gpeters-fetchNOMe")