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Currently, the projection task fails when it's given zyx data (e.g. from FAIM-IPA converter) instead of czyx data:
fractal_server.app.runner.exceptions.TaskExecutionError: 2024-09-17 12:09:57,810; INFO; START projection task 2024-09-17 12:09:57,810; INFO; init_args.origin_url='/path/to/001_240815-SB-020-AAB/MD-4x/240815-SB-040-AAB-Reg-10WntCM_out-FractalWeb/240815-SB-040-AAB-Reg-10WntCM_out.zarr/E/04/0' 2024-09-17 12:09:57,810; INFO; zarr_url='/path/to/001_240815-SB-020-AAB/MD-4x/240815-SB-040-AAB-Reg-10WntCM_out-FractalWeb/240815-SB-040-AAB-Reg-10WntCM_out_minip.zarr/E/04/0' 2024-09-17 12:09:57,810; INFO; method=<DaskProjectionMethod.MINIP: 'minip'> 2024-09-17 12:10:00,203; INFO; num_channels=10 2024-09-17 12:10:00,203; INFO; chunksize_y=2048 2024-09-17 12:10:00,203; INFO; chunksize_x=2048 2024-09-17 12:10:02,140; INFO; [build_pyramid] High-resolution path: /path/to/001_240815-SB-020-AAB/MD-4x/240815-SB-040-AAB-Reg-10WntCM_out-FractalWeb/240815-SB-040-AAB-Reg-10WntCM_out_minip.zarr/E/04/0/0 2024-09-17 12:10:02,146; INFO; [build_pyramid] High-resolution data: dask.array<from-zarr, shape=(10, 1, 2048), dtype=uint16, chunksize=(1, 1, 2048), chunktype=numpy.ndarray> Traceback (most recent call last): File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/fractal_tasks_core/tasks/projection.py", line 190, in <module> run_fractal_task( File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/fractal_tasks_core/tasks/_utils.py", line 79, in run_fractal_task metadata_update = task_function(**pars) File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/pydantic/validate_call_decorator.py", line 60, in wrapper_function return validate_call_wrapper(*args, **kwargs) File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/pydantic/_internal/_validate_call.py", line 96, in __call__ res = self.__pydantic_validator__.validate_python(pydantic_core.ArgsKwargs(args, kwargs)) File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/fractal_tasks_core/tasks/projection.py", line 113, in projection build_pyramid( File "/path/to/FRACTAL_TASK_DIR/.fractal/fractal-tasks-core1.3.0/venv/lib/python3.10/site-packages/fractal_tasks_core/pyramids.py", line 80, in build_pyramid raise ValueError(
cc @silvbarb
The text was updated successfully, but these errors were encountered:
The multiscales metadata of the corresponding images contains this:
"multiscales": [ { "axes": [ { "name": "z", "type": "space", "unit": "micrometer" }, { "name": "y", "type": "space", "unit": "micrometer" }, { "name": "x", "type": "space", "unit": "micrometer" } ],
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Currently, the projection task fails when it's given zyx data (e.g. from FAIM-IPA converter) instead of czyx data:
cc @silvbarb
The text was updated successfully, but these errors were encountered: