Output

[fafuyyk]

Hello!
I used fastQTL to conduct an sQTL identification, the command is as follows:
fastQTL.static --vcf merged.vcf.gz --bed Osa_perind.counts.gz.qqnorm_Chr1.gz --cov Osa_perind.counts.gz.PCs.PC5 --permute 1000 10000 --normal --out Osa_perind.permutation. Chr1 --chunk 1 1
This is my first time using permute mode and there are 17 columns of results. I can't understand many columns because they don't have column names. I hope to know the corresponding meanings of these columns.

[francois-a]

Please consider using tensorQTL instead, as this will provide the column headers. Documentation about the headers is provided here. For the FastQTL outputs, the headers are added in merge_chunks.py.