Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

trouble while installing MoCha #50

Open
zedicush opened this issue Sep 24, 2024 · 2 comments
Open

trouble while installing MoCha #50

zedicush opened this issue Sep 24, 2024 · 2 comments

Comments

@zedicush
Copy link

Hello,

I'm getting trouble while installing MoCha with this command line.
" cd bcftools-1.20/
/bin/rm -f plugins/{{mocha,beta_binom,genome_rules}.h,{mocha,mochatools,extendFMT}.c}
wget -P plugins https://raw.githubusercontent.com/freeseek/mocha/master/{{mocha,beta_binom,genome_rules}.h,{mocha,mochatools,extendFMT}.c}
make
/bin/cp bcftools plugins/{fill-tags,fixploidy,mocha,trio-phase,mochatools,extendFMT}.so $HOME/bin/ "

The error is /bin/cp bcftools plugins/{fill-tags,fixploidy,mocha,trio-phase,mochatools,extendFMT}.so $HOME/bin/
/bin/cp: cannot stat 'plugins/trio-phase.so': No such file or directory

After the make, I don't see the trio-phase in the plugins.
thank you

@freeseek
Copy link
Owner

Yeah sorry, the trio-phase plugin has been sunset as the same capability is now available in SHAPEIT5. Just remove it from the command line. I will update the documentation

@zedicush
Copy link
Author

Thank you for the quick answer

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants