cwl_conformance.yaml

name: CWL conformance
on:
  push:
    paths-ignore:
      - 'client/**'
      - 'doc/**'
      - 'lib/galaxy_test/selenium/**'
  pull_request:
    paths-ignore:
      - 'client/**'
      - 'doc/**'
      - 'lib/galaxy_test/selenium/**'
env:
  GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true
jobs:
  test:
    name: Test
    if: ${{ false }}
    runs-on: ubuntu-latest
    continue-on-error: ${{ startsWith(matrix.marker, 'red') }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.8']
        marker: ['green', 'red and required', 'red and not required']
        conformance-version: ['cwl_conformance_v1_0'] #, 'cwl_conformance_v1_1', 'cwl_conformance_v1_2']
    services:
      postgres:
        image: postgres:13
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: postgres
          POSTGRES_DB: postgres
        ports:
          - 5432:5432
    steps:
      - uses: actions/checkout@v4
        with:
          path: 'galaxy root'
      - uses: actions/setup-node@v4
        with:
          node-version: '18.12.1'
          cache: 'yarn'
          cache-dependency-path: 'galaxy root/client/yarn.lock'
      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Get full Python version
        id: full-python-version
        shell: bash
        run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
      - name: Cache pip dir
        uses: actions/cache@v4
        with:
          path: ~/.cache/pip
          key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
      - name: Cache galaxy venv
        uses: actions/cache@v4
        with:
          path: 'galaxy root/.venv'
          key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-api
      - name: Run tests
        run: ./run_tests.sh --coverage --skip_flakey_fails -cwl lib/galaxy_test/api/cwl -- -m "${{ matrix.marker }} and ${{ matrix.conformance-version }}"
        working-directory: 'galaxy root'
      - uses: codecov/codecov-action@v3
        with:
          flags: cwl-conformance
          working-directory: 'galaxy root'
      - uses: actions/upload-artifact@v4
        if: failure()
        with:
          name: CWL conformance test results (${{ matrix.python-version }}, ${{ matrix.marker }}, ${{ matrix.conformance-version }})
          path: 'galaxy root/run_cwl_tests.html'