diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 83e06b46e4a7..6ec88d4559c2 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -1,4 +1,4 @@ -aiohttp==3.9.4 ; python_version >= "3.8" and python_version < "3.13" +aiohttp==3.9.5 ; python_version >= "3.8" and python_version < "3.13" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.13" anyio==4.3.0 ; python_version >= "3.8" and python_version < "3.13" @@ -28,7 +28,7 @@ darkgraylib==1.2.0 ; python_version >= "3.8" and python_version < "3.13" defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" deprecated==1.2.14 ; python_version >= "3.8" and python_version < "3.13" docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.13" -exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" +exceptiongroup==1.2.1 ; python_version >= "3.8" and python_version < "3.11" filelock==3.13.4 ; python_version >= "3.8" and python_version < "3.13" fluent-logger==0.11.0 ; python_version >= "3.8" and python_version < "3.13" fonttools==4.51.0 ; python_version >= "3.8" and python_version < "3.13" @@ -48,7 +48,7 @@ isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13" isort==5.13.2 ; python_version >= "3.8" and python_version < "3.13" jaraco-classes==3.4.0 ; python_version >= "3.8" and python_version < "3.13" jaraco-context==5.3.0 ; python_version >= "3.8" and python_version < "3.13" -jaraco-functools==4.0.0 ; python_version >= "3.8" and python_version < "3.13" +jaraco-functools==4.0.1 ; python_version >= "3.8" and python_version < "3.13" jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.13" junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13" @@ -105,7 +105,7 @@ pytest-mock==3.14.0 ; python_version >= "3.8" and python_version < "3.13" pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13" pytest-postgresql==6.0.0 ; python_version >= "3.8" and python_version < "3.13" pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13" +pytest==8.1.1 ; python_version >= "3.8" and python_version < "3.13" python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" python-irodsclient==2.0.0 ; python_version >= "3.8" and python_version < "3.13" python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index 730194ff2389..795bc6b0108e 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==24.2.6 mccabe==0.7.0 pycodestyle==2.11.1 pyflakes==3.2.0 -ruff==0.3.7 +ruff==0.4.1 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 8bc4c310b5d9..dada8e9dbafe 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -5,7 +5,7 @@ adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13" aiobotocore==2.12.3 ; python_version >= "3.8" and python_version < "3.13" aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13" aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.13" -aiohttp==3.9.4 ; python_version >= "3.8" and python_version < "3.13" +aiohttp==3.9.5 ; python_version >= "3.8" and python_version < "3.13" aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.13" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13" alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.13" @@ -36,7 +36,7 @@ boto==2.49.0 ; python_version >= "3.8" and python_version < "3.13" botocore==1.34.69 ; python_version >= "3.8" and python_version < "3.13" bx-python==0.11.0 ; python_version >= "3.8" and python_version < "3.13" cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13" +celery==5.4.0 ; python_version >= "3.8" and python_version < "3.13" certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13" cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13" @@ -65,8 +65,8 @@ docutils==0.20.1 ; python_version >= "3.8" and python_version < "3.13" dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.13" edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13" email-validator==2.1.1 ; python_version >= "3.8" and python_version < "3.13" -exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" -fastapi==0.110.1 ; python_version >= "3.8" and python_version < "3.13" +exceptiongroup==1.2.1 ; python_version >= "3.8" and python_version < "3.11" +fastapi==0.110.2 ; python_version >= "3.8" and python_version < "3.13" filelock==3.13.4 ; python_version >= "3.8" and python_version < "3.13" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" fs==2.4.16 ; python_version >= "3.8" and python_version < "3.13" @@ -80,7 +80,7 @@ graphql-core==3.2.3 ; python_version >= "3.8" and python_version < "3.13" graphql-relay==3.2.0 ; python_version >= "3.8" and python_version < "3.13" gravity==1.0.6 ; python_version >= "3.8" and python_version < "3.13" greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") -gunicorn==21.2.0 ; python_version >= "3.8" and python_version < "3.13" +gunicorn==22.0.0 ; python_version >= "3.8" and python_version < "3.13" gxformat2==0.18.0 ; python_version >= "3.8" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" h5grove==2.1.0 ; python_version >= "3.8" and python_version < "3.13" @@ -156,11 +156,11 @@ python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.13" python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.13" pytz==2024.1 ; python_version >= "3.8" and python_version < "3.13" pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13" -pyzmq==26.0.0 ; python_version >= "3.8" and python_version < "3.13" +pyzmq==26.0.2 ; python_version >= "3.8" and python_version < "3.13" rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" referencing==0.34.0 ; python_version >= "3.8" and python_version < "3.13" refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13" -regex==2023.12.25 ; python_version >= "3.8" and python_version < "3.13" +regex==2024.4.16 ; python_version >= "3.8" and python_version < "3.13" repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13" requests-oauthlib==2.0.0 ; python_version >= "3.8" and python_version < "3.13" requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13"