From 3c4c0aa479021517786f0330282064e864d9f4f9 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 24 Feb 2024 03:18:38 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 8 ++++---- lib/galaxy/dependencies/pinned-requirements.txt | 12 +++++++----- .../dependencies/pinned-typecheck-requirements.txt | 2 +- 3 files changed, 12 insertions(+), 10 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 3653ef9dcaf6..a84ae7ba024f 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -25,8 +25,8 @@ click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.13" -coverage[toml]==7.4.2 ; python_version >= "3.8" and python_version < "3.13" -cryptography==42.0.4 ; python_version >= "3.8" and python_version < "3.13" +coverage[toml]==7.4.3 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" cwltest==2.4.20240129145612 ; python_version >= "3.8" and python_version < "3.13" cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13" darker==1.7.2 ; python_version >= "3.8" and python_version < "3.13" @@ -103,7 +103,7 @@ pytest-base-url==2.1.0 ; python_version >= "3.8" and python_version < "3.13" pytest-celery==0.0.0 ; python_version >= "3.8" and python_version < "3.13" pytest-cov==4.1.0 ; python_version >= "3.8" and python_version < "3.13" pytest-html==4.1.1 ; python_version >= "3.8" and python_version < "3.13" -pytest-httpserver==1.0.9 ; python_version >= "3.8" and python_version < "3.13" +pytest-httpserver==1.0.10 ; python_version >= "3.8" and python_version < "3.13" pytest-json-report==1.5.0 ; python_version >= "3.8" and python_version < "3.13" pytest-metadata==3.1.1 ; python_version >= "3.8" and python_version < "3.13" pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.13" @@ -132,7 +132,7 @@ scipy==1.12.0 ; python_version >= "3.9" and python_version < "3.13" secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" selenium==4.18.1 ; python_version >= "3.8" and python_version < "3.13" seletools==1.4.0 ; python_version >= "3.8" and python_version < "3.13" -setuptools==69.1.0 ; python_version >= "3.8" and python_version < "3.13" +setuptools==69.1.1 ; python_version >= "3.8" and python_version < "3.13" six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.13" snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index a32343d0d0db..d9d002fd0eea 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -1,3 +1,5 @@ +--extra-index-url https://wheels.galaxyproject.org/simple + a2wsgi==1.10.2 ; python_version >= "3.8" and python_version < "3.13" adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13" aiobotocore==2.11.2 ; python_version >= "3.8" and python_version < "3.13" @@ -49,7 +51,7 @@ cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and platform_system == "Windows" coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.13" conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.13" -cryptography==42.0.4 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.13" cwl-utils==0.32 ; python_version >= "3.8" and python_version < "3.13" cwltool==3.1.20240112164112 ; python_version >= "3.8" and python_version < "3.13" @@ -65,7 +67,7 @@ ecdsa==0.18.0 ; python_version >= "3.8" and python_version < "3.13" edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13" email-validator==2.1.0.post1 ; python_version >= "3.8" and python_version < "3.13" exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" -fastapi==0.109.2 ; python_version >= "3.8" and python_version < "3.13" +fastapi==0.110.0 ; python_version >= "3.8" and python_version < "3.13" filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" fs==2.4.16 ; python_version >= "3.8" and python_version < "3.13" @@ -107,7 +109,7 @@ mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" mercurial==6.6.3 ; python_version >= "3.8" and python_version < "3.13" mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.13" mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13" -msal==1.26.0 ; python_version >= "3.8" and python_version < "3.13" +msal==1.27.0 ; python_version >= "3.8" and python_version < "3.13" msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.13" multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" @@ -116,7 +118,7 @@ nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.13" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==1.26.4 ; python_version >= "3.9" and python_version < "3.13" oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -orjson==3.9.14 ; python_version >= "3.8" and python_version < "3.13" +orjson==3.9.15 ; python_version >= "3.8" and python_version < "3.13" oyaml==1.0 ; python_version >= "3.8" and python_version < "3.13" packaging==23.2 ; python_version >= "3.8" and python_version < "3.13" paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.13" @@ -176,7 +178,7 @@ ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" s3fs==2023.12.2 ; python_version >= "3.8" and python_version < "3.13" schema-salad==8.5.20240102191335 ; python_version >= "3.8" and python_version < "3.13" setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.13" -setuptools==69.1.0 ; python_version >= "3.8" and python_version < "3.13" +setuptools==69.1.1 ; python_version >= "3.8" and python_version < "3.13" shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.13" six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 07842cb52fa0..adffc7ad830b 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,6 +1,6 @@ annotated-types==0.6.0 ; python_version >= "3.8" and python_version < "3.13" cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" -cryptography==42.0.4 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.13"