From 71e1e14b5af75e8f4571eea3f70bd9c0d4f9b116 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 17 Feb 2024 03:10:04 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 16 ++++++++-------- lib/galaxy/dependencies/pinned-requirements.txt | 8 ++++---- .../pinned-typecheck-requirements.txt | 2 +- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index a6a92842ef80..8b8399f378d2 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -26,7 +26,7 @@ codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.13" coverage[toml]==7.4.1 ; python_version >= "3.8" and python_version < "3.13" -cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.3 ; python_version >= "3.8" and python_version < "3.13" cwltest==2.4.20240129145612 ; python_version >= "3.8" and python_version < "3.13" cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13" darker==1.7.2 ; python_version >= "3.8" and python_version < "3.13" @@ -36,12 +36,12 @@ docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.13" exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13" fluent-logger==0.10.0 ; python_version >= "3.8" and python_version < "3.13" -fonttools==4.48.1 ; python_version >= "3.8" and python_version < "3.13" +fonttools==4.49.0 ; python_version >= "3.8" and python_version < "3.13" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13" -galaxy-release-util==0.1.5 ; python_version >= "3.8" and python_version < "3.13" +galaxy-release-util==0.1.6 ; python_version >= "3.8" and python_version < "3.13" greenlet==3.0.3 ; python_version >= "3.8" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.13" -httpcore==1.0.2 ; python_version >= "3.8" and python_version < "3.13" +httpcore==1.0.3 ; python_version >= "3.8" and python_version < "3.13" httpx==0.26.0 ; python_version >= "3.8" and python_version < "3.13" idna==3.6 ; python_version >= "3.8" and python_version < "3.13" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13" @@ -61,8 +61,8 @@ lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.13" markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13" -matplotlib==3.7.4 ; python_version >= "3.8" and python_version < "3.9" -matplotlib==3.8.2 ; python_version >= "3.9" and python_version < "3.13" +matplotlib==3.7.5 ; python_version >= "3.8" and python_version < "3.9" +matplotlib==3.8.3 ; python_version >= "3.9" and python_version < "3.13" mdit-py-plugins==0.4.0 ; python_version >= "3.8" and python_version < "3.13" mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13" mirakuru==2.5.2 ; python_version >= "3.8" and python_version < "3.13" @@ -110,7 +110,7 @@ pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.13" pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13" pytest-postgresql==5.1.0 ; python_version >= "3.8" and python_version < "3.13" pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13" +pytest==8.0.1 ; python_version >= "3.8" and python_version < "3.13" python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.13" python-irodsclient==2.0.0 ; python_version >= "3.8" and python_version < "3.13" python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.13" @@ -147,7 +147,7 @@ sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "3.13 sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "3.13" sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "3.13" statsd==4.0.1 ; python_version >= "3.8" and python_version < "3.13" -testfixtures==7.2.2 ; python_version >= "3.8" and python_version < "3.13" +testfixtures==8.0.0 ; python_version >= "3.8" and python_version < "3.13" text-unidecode==1.3 ; python_version >= "3.8" and python_version < "3.13" tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13" toml==0.10.2 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index a2f72da952c3..252947402e3d 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -49,7 +49,7 @@ cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and platform_system == "Windows" coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.13" conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.13" -cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.3 ; python_version >= "3.8" and python_version < "3.13" cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.13" cwl-utils==0.32 ; python_version >= "3.8" and python_version < "3.13" cwltool==3.1.20240112164112 ; python_version >= "3.8" and python_version < "3.13" @@ -57,7 +57,7 @@ decorator==5.1.1 ; python_version >= "3.8" and python_version < "3.13" defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13" deprecation==2.1.0 ; python_version >= "3.8" and python_version < "3.13" dictobj==0.4 ; python_version >= "3.8" and python_version < "3.13" -dnspython==2.5.0 ; python_version >= "3.8" and python_version < "3.13" +dnspython==2.6.0 ; python_version >= "3.8" and python_version < "3.13" docopt==0.6.2 ; python_version >= "3.8" and python_version < "3.13" docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.13" dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.13" @@ -116,7 +116,7 @@ nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.13" numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.9" numpy==1.26.4 ; python_version >= "3.9" and python_version < "3.13" oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.13" -orjson==3.9.13 ; python_version >= "3.8" and python_version < "3.13" +orjson==3.9.14 ; python_version >= "3.8" and python_version < "3.13" oyaml==1.0 ; python_version >= "3.8" and python_version < "3.13" packaging==23.2 ; python_version >= "3.8" and python_version < "3.13" paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.13" @@ -169,7 +169,7 @@ requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13" rich==13.7.0 ; python_version >= "3.8" and python_version < "3.13" rocrate==0.9.0 ; python_version >= "3.8" and python_version < "3.13" routes==2.5.1 ; python_version >= "3.8" and python_version < "3.13" -rpds-py==0.17.1 ; python_version >= "3.8" and python_version < "3.13" +rpds-py==0.18.0 ; python_version >= "3.8" and python_version < "3.13" rsa==4.9 ; python_version >= "3.8" and python_version < "3.13" ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8" ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 27e7dfdccf1a..03fd732327c9 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,6 +1,6 @@ annotated-types==0.6.0 ; python_version >= "3.8" and python_version < "3.13" cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" -cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13" +cryptography==42.0.3 ; python_version >= "3.8" and python_version < "3.13" lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.13"