From e41e3cb2f87215abc5d7d07142d01e78c6599f50 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Thu, 24 Oct 2024 08:05:04 -0400 Subject: [PATCH] Baisc boxplot --- client/package.json | 3 + .../MetricsBoxPlots.vue | 145 ------ .../WorkflowInvocationState/VegaWrapper.vue | 43 ++ .../WorkflowInvocationMetrics.vue | 87 +++- .../WorkflowInvocationState.vue | 4 +- client/yarn.lock | 479 +++++++++++++++++- 6 files changed, 573 insertions(+), 188 deletions(-) delete mode 100644 client/src/components/WorkflowInvocationState/MetricsBoxPlots.vue create mode 100644 client/src/components/WorkflowInvocationState/VegaWrapper.vue diff --git a/client/package.json b/client/package.json index 6368e9cf3bad..b2a751ff3d94 100644 --- a/client/package.json +++ b/client/package.json @@ -101,6 +101,9 @@ "tus-js-client": "^3.1.1", "underscore": "^1.13.6", "util": "^0.12.5", + "vega": "^5.30.0", + "vega-embed": "^6.26.0", + "vega-lite": "^5.21.0", "vue": "^2.7.14", "vue-echarts": "^7.0.3", "vue-infinite-scroll": "^2.0.2", diff --git a/client/src/components/WorkflowInvocationState/MetricsBoxPlots.vue b/client/src/components/WorkflowInvocationState/MetricsBoxPlots.vue deleted file mode 100644 index 1d8ad34ecba6..000000000000 --- a/client/src/components/WorkflowInvocationState/MetricsBoxPlots.vue +++ /dev/null @@ -1,145 +0,0 @@ - - - - - diff --git a/client/src/components/WorkflowInvocationState/VegaWrapper.vue b/client/src/components/WorkflowInvocationState/VegaWrapper.vue new file mode 100644 index 000000000000..783e6a801b53 --- /dev/null +++ b/client/src/components/WorkflowInvocationState/VegaWrapper.vue @@ -0,0 +1,43 @@ + + + + + diff --git a/client/src/components/WorkflowInvocationState/WorkflowInvocationMetrics.vue b/client/src/components/WorkflowInvocationState/WorkflowInvocationMetrics.vue index cb9aed99233f..a6d154fad345 100644 --- a/client/src/components/WorkflowInvocationState/WorkflowInvocationMetrics.vue +++ b/client/src/components/WorkflowInvocationState/WorkflowInvocationMetrics.vue @@ -1,10 +1,10 @@ diff --git a/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue b/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue index bcf03f61b816..bbc3d4a4f443 100644 --- a/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue +++ b/client/src/components/WorkflowInvocationState/WorkflowInvocationState.vue @@ -13,9 +13,9 @@ import { isTerminal, jobCount, runningCount } from "./util"; import InvocationReport from "../Workflow/InvocationReport.vue"; import WorkflowInvocationExportOptions from "./WorkflowInvocationExportOptions.vue"; -import WorkflowInvocationMetrics from "./WorkflowInvocationMetrics.vue"; import WorkflowInvocationHeader from "./WorkflowInvocationHeader.vue"; import WorkflowInvocationInputOutputTabs from "./WorkflowInvocationInputOutputTabs.vue"; +import WorkflowInvocationMetrics from "./WorkflowInvocationMetrics.vue"; import WorkflowInvocationOverview from "./WorkflowInvocationOverview.vue"; import LoadingSpan from "@/components/LoadingSpan.vue"; @@ -186,7 +186,7 @@ function cancelWorkflowSchedulingLocal() { - + diff --git a/client/yarn.lock b/client/yarn.lock index e2d8fe0bc261..3adf17591dcb 100644 --- a/client/yarn.lock +++ b/client/yarn.lock @@ -2507,6 +2507,11 @@ dependencies: "@types/trusted-types" "*" +"@types/estree@^1.0.0": + version "1.0.6" + resolved "https://registry.yarnpkg.com/@types/estree/-/estree-1.0.6.tgz#628effeeae2064a1b4e79f78e81d87b7e5fc7b50" + integrity sha512-AYnb1nQyY49te+VRAVgmzfcgjYS91mY5P0TKUDCLEM+gNnA+3T6rWITXRLYCpahpqSQbN5cE+gHpnPyXjHWxcw== + "@types/estree@^1.0.5": version "1.0.5" resolved "https://registry.yarnpkg.com/@types/estree/-/estree-1.0.5.tgz#a6ce3e556e00fd9895dd872dd172ad0d4bd687f4" @@ -2536,6 +2541,11 @@ resolved "https://registry.yarnpkg.com/@types/geojson/-/geojson-7946.0.10.tgz#6dfbf5ea17142f7f9a043809f1cd4c448cb68249" integrity sha512-Nmh0K3iWQJzniTuPRcJn5hxXkfB1T1pgB89SBig5PlJQU5yocazeu4jATJlaA0GYFKWMqDdvYemoSnF2pXgLVA== +"@types/geojson@7946.0.4": + version "7946.0.4" + resolved "https://registry.yarnpkg.com/@types/geojson/-/geojson-7946.0.4.tgz#4e049756383c3f055dd8f3d24e63fb543e98eb07" + integrity sha512-MHmwBtCb7OCv1DSivz2UNJXPGU/1btAWRKlqJ2saEhVJkpkvqHMMaOpKg0v4sAbDWSQekHGvPVMM8nQ+Jen03Q== + "@types/graceful-fs@^4.1.3": version "4.1.5" resolved "https://registry.npmjs.org/@types/graceful-fs/-/graceful-fs-4.1.5.tgz" @@ -4314,6 +4324,11 @@ combined-stream@^1.0.8: dependencies: delayed-stream "~1.0.0" +commander@2, commander@^2.19.0, commander@^2.20.0: + version "2.20.3" + resolved "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz" + integrity sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ== + commander@7, commander@^7.2.0: version "7.2.0" resolved "https://registry.npmjs.org/commander/-/commander-7.2.0.tgz" @@ -4324,11 +4339,6 @@ commander@^10.0.1: resolved "https://registry.yarnpkg.com/commander/-/commander-10.0.1.tgz#881ee46b4f77d1c1dccc5823433aa39b022cbe06" integrity sha512-y4Mg2tXshplEbSGzx7amzPwKKOCGuoSRP/CjEdwwk0FOGlUbq6lKuoyDZTNZkmxHdJtp54hdfY/JUrdL7Xfdug== -commander@^2.19.0, commander@^2.20.0: - version "2.20.3" - resolved "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz" - integrity sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ== - component-emitter@^1.2.1: version "1.3.0" resolved "https://registry.npmjs.org/component-emitter/-/component-emitter-1.3.0.tgz" @@ -4722,6 +4732,13 @@ custom-error-instance@2.1.1: resolved "https://registry.npmjs.org/custom-error-instance/-/custom-error-instance-2.1.1.tgz" integrity sha512-p6JFxJc3M4OTD2li2qaHkDCw9SfMw82Ldr6OC9Je1aXiGfhx2W8p3GaoeaGrPJTUN9NirTM/KTxHWMUdR1rsUg== +"d3-array@1 - 3", d3-array@3.2.4, d3-array@^3.2.2: + version "3.2.4" + resolved "https://registry.yarnpkg.com/d3-array/-/d3-array-3.2.4.tgz#15fec33b237f97ac5d7c986dc77da273a8ed0bb5" + integrity sha512-tdQAmyA18i4J7wprpYq8ClcxZy3SC31QMeByyCFyRt7BVHdREQZ5lpzoe5mFEYZUWe+oq8HBvk9JjpibyEV4Jg== + dependencies: + internmap "1 - 2" + "d3-array@2 - 3", "d3-array@2.10.0 - 3", "d3-array@2.5.0 - 3", d3-array@3, d3-array@^3.2.0: version "3.2.1" resolved "https://registry.yarnpkg.com/d3-array/-/d3-array-3.2.1.tgz#39331ea706f5709417d31bbb6ec152e0328b39b3" @@ -4752,7 +4769,7 @@ d3-chord@3: dependencies: d3-path "1 - 3" -"d3-color@1 - 3", d3-color@3: +"d3-color@1 - 3", d3-color@3, d3-color@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/d3-color/-/d3-color-3.1.0.tgz#395b2833dfac71507f12ac2f7af23bf819de24e2" integrity sha512-zg/chbXyeBtMQ1LbD/WSoW2DpC3I0mpmPdW+ynRTj/x2DAWYrIY7qeZIHidozwV24m4iavr15lNwIwLxRmOxhA== @@ -4771,6 +4788,13 @@ d3-delaunay@6: dependencies: delaunator "5" +d3-delaunay@^6.0.2: + version "6.0.4" + resolved "https://registry.yarnpkg.com/d3-delaunay/-/d3-delaunay-6.0.4.tgz#98169038733a0a5babbeda55054f795bb9e4a58b" + integrity sha512-mdjtIZ1XLAM8bm/hx3WwjfHt6Sggek7qH043O8KEjDXN40xi3vx/6pYSVTwLjEgiXQTbvaouWKynLBiUZ6SK6A== + dependencies: + delaunator "5" + "d3-dispatch@1 - 3", d3-dispatch@3: version "3.0.1" resolved "https://registry.yarnpkg.com/d3-dispatch/-/d3-dispatch-3.0.1.tgz#5fc75284e9c2375c36c839411a0cf550cbfc4d5e" @@ -4784,7 +4808,7 @@ d3-delaunay@6: d3-dispatch "1 - 3" d3-selection "3" -"d3-dsv@1 - 3", d3-dsv@3: +"d3-dsv@1 - 3", d3-dsv@3, d3-dsv@^3.0.1: version "3.0.1" resolved "https://registry.yarnpkg.com/d3-dsv/-/d3-dsv-3.0.1.tgz#c63af978f4d6a0d084a52a673922be2160789b73" integrity sha512-UG6OvdI5afDIFP9w4G0mNq50dSOsXHJaRE8arAS5o9ApWnIElp8GZw1Dun8vP8OyHOZ/QJUKUJwxiiCCnUwm+Q== @@ -4805,7 +4829,7 @@ d3-fetch@3: dependencies: d3-dsv "1 - 3" -d3-force@3: +d3-force@3, d3-force@^3.0.0: version "3.0.0" resolved "https://registry.yarnpkg.com/d3-force/-/d3-force-3.0.0.tgz#3e2ba1a61e70888fe3d9194e30d6d14eece155c4" integrity sha512-zxV/SsA+U4yte8051P4ECydjD/S+qeYtnaIyAs9tgHCqfguma/aAQDjo85A9Z6EKhBirHRJHXIgJUlffT4wdLg== @@ -4814,11 +4838,27 @@ d3-force@3: d3-quadtree "1 - 3" d3-timer "1 - 3" -"d3-format@1 - 3", d3-format@3: +"d3-format@1 - 3", d3-format@3, d3-format@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/d3-format/-/d3-format-3.1.0.tgz#9260e23a28ea5cb109e93b21a06e24e2ebd55641" integrity sha512-YyUI6AEuY/Wpt8KWLgZHsIU86atmikuoOmCfommt0LYHiQSPjvX2AcFc38PX0CBpr2RCyZhjex+NS/LPOv6YqA== +d3-geo-projection@^4.0.0: + version "4.0.0" + resolved "https://registry.yarnpkg.com/d3-geo-projection/-/d3-geo-projection-4.0.0.tgz#dc229e5ead78d31869a4e87cf1f45bd2716c48ca" + integrity sha512-p0bK60CEzph1iqmnxut7d/1kyTmm3UWtPlwdkM31AU+LW+BXazd5zJdoCn7VFxNCHXRngPHRnsNn5uGjLRGndg== + dependencies: + commander "7" + d3-array "1 - 3" + d3-geo "1.12.0 - 3" + +"d3-geo@1.12.0 - 3", d3-geo@^3.1.0: + version "3.1.1" + resolved "https://registry.yarnpkg.com/d3-geo/-/d3-geo-3.1.1.tgz#6027cf51246f9b2ebd64f99e01dc7c3364033a4d" + integrity sha512-637ln3gXKXOwhalDzinUgY83KzNWZRKbYubaG+fGVuc/dxO64RRljtCTnf5ecMyE1RIdtqpkVcq0IbtU2S8j2Q== + dependencies: + d3-array "2.5.0 - 3" + d3-geo@3: version "3.1.0" resolved "https://registry.yarnpkg.com/d3-geo/-/d3-geo-3.1.0.tgz#74fd54e1f4cebd5185ac2039217a98d39b0a4c0e" @@ -4826,12 +4866,12 @@ d3-geo@3: dependencies: d3-array "2.5.0 - 3" -d3-hierarchy@3: +d3-hierarchy@3, d3-hierarchy@^3.1.2: version "3.1.2" resolved "https://registry.yarnpkg.com/d3-hierarchy/-/d3-hierarchy-3.1.2.tgz#b01cd42c1eed3d46db77a5966cf726f8c09160c6" integrity sha512-FX/9frcub54beBdugHjDCdikxThEqjnR93Qt7PvQTOHxyiNCAlvMrHhclk3cD5VeAaq9fxmfRp+CnWw9rEMBuA== -"d3-interpolate@1 - 3", "d3-interpolate@1.2.0 - 3", d3-interpolate@3: +"d3-interpolate@1 - 3", "d3-interpolate@1.2.0 - 3", d3-interpolate@3, d3-interpolate@^3.0.1: version "3.0.1" resolved "https://registry.yarnpkg.com/d3-interpolate/-/d3-interpolate-3.0.1.tgz#3c47aa5b32c5b3dfb56ef3fd4342078a632b400d" integrity sha512-3bYs1rOD33uo8aqJfKP3JWPAibgw8Zm2+L9vBKEHJ2Rg+viTR7o5Mmv5mZcieN+FRYaAOWX5SJATX6k1PWz72g== @@ -4866,7 +4906,15 @@ d3-scale-chromatic@3: d3-color "1 - 3" d3-interpolate "1 - 3" -d3-scale@4: +d3-scale-chromatic@^3.1.0: + version "3.1.0" + resolved "https://registry.yarnpkg.com/d3-scale-chromatic/-/d3-scale-chromatic-3.1.0.tgz#34c39da298b23c20e02f1a4b239bd0f22e7f1314" + integrity sha512-A3s5PWiZ9YCXFye1o246KoscMWqf8BsD9eRiJ3He7C9OBaxKhAd5TFCdEx/7VbKtxxTsu//1mMJFrEt572cEyQ== + dependencies: + d3-color "1 - 3" + d3-interpolate "1 - 3" + +d3-scale@4, d3-scale@^4.0.2: version "4.0.2" resolved "https://registry.yarnpkg.com/d3-scale/-/d3-scale-4.0.2.tgz#82b38e8e8ff7080764f8dcec77bd4be393689396" integrity sha512-GZW464g1SH7ag3Y7hXjf8RoUuAFIqklOAq3MRl4OaWabTFJY9PN/E1YklhXLh+OQ3fM9yS2nOkCoS+WLZ6kvxQ== @@ -4882,28 +4930,28 @@ d3-scale@4: resolved 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d3-time@3, d3-time@^3.1.0: version "3.1.0" resolved "https://registry.yarnpkg.com/d3-time/-/d3-time-3.1.0.tgz#9310db56e992e3c0175e1ef385e545e48a9bb5c7" integrity sha512-VqKjzBLejbSMT4IgbmVgDjpkYrNWUYJnbCGo874u7MMKIWsILRX+OpX/gTk8MqjpT1A/c6HY2dCA77ZN0lkQ2Q== dependencies: d3-array "2 - 3" -"d3-timer@1 - 3", d3-timer@3: +"d3-timer@1 - 3", d3-timer@3, d3-timer@^3.0.1: version "3.0.1" resolved "https://registry.yarnpkg.com/d3-timer/-/d3-timer-3.0.1.tgz#6284d2a2708285b1abb7e201eda4380af35e63b0" integrity sha512-ndfJ/JxxMd3nw31uyKoY2naivF+r29V+Lc0svZxe1JvvIRmi8hUsrMvdOwgS1o6uBHmiz91geQ0ylPP0aj1VUA== @@ -6079,6 +6127,11 @@ fast-glob@^3.3.0: merge2 "^1.3.0" micromatch "^4.0.4" +fast-json-patch@^3.1.1: + version "3.1.1" + resolved "https://registry.yarnpkg.com/fast-json-patch/-/fast-json-patch-3.1.1.tgz#85064ea1b1ebf97a3f7ad01e23f9337e72c66947" + integrity sha512-vf6IHUX2SBcA+5/+4883dsIjpBTqmfBjmYiWK1savxQmFk4JfBMLa7ynTYOs1Rolp/T1betJxHiGD3g1Mn8lUQ== + fast-json-stable-stringify@2.x, fast-json-stable-stringify@^2.0.0, fast-json-stable-stringify@^2.1.0: version "2.1.0" resolved "https://registry.npmjs.org/fast-json-stable-stringify/-/fast-json-stable-stringify-2.1.0.tgz" @@ -8137,6 +8190,11 @@ json-stable-stringify-without-jsonify@^1.0.1: resolved "https://registry.npmjs.org/json-stable-stringify-without-jsonify/-/json-stable-stringify-without-jsonify-1.0.1.tgz" integrity sha512-Bdboy+l7tA3OGW6FjyFHWkP5LuByj1Tk33Ljyq0axyzdk9//JSi2u3fP1QSmd1KNwq6VOKYGlAu87CisVir6Pw== +json-stringify-pretty-compact@^3.0.0, json-stringify-pretty-compact@~3.0.0: + version "3.0.0" + resolved "https://registry.yarnpkg.com/json-stringify-pretty-compact/-/json-stringify-pretty-compact-3.0.0.tgz#f71ef9d82ef16483a407869556588e91b681d9ab" + integrity sha512-Rc2suX5meI0S3bfdZuA7JMFBGkJ875ApfVyq2WHELjBiiG22My/l7/8zPpH/CfFVQHuVLd8NLR0nv6vi0BYYKA== + json5@^1.0.1: version "1.0.1" resolved "https://registry.npmjs.org/json5/-/json5-1.0.1.tgz" @@ -10534,6 +10592,11 @@ semver@^7.3.4, semver@^7.3.6, semver@^7.3.8, semver@^7.5.3, semver@^7.5.4: dependencies: lru-cache "^6.0.0" +semver@^7.6.2: + version "7.6.3" + resolved "https://registry.yarnpkg.com/semver/-/semver-7.6.3.tgz#980f7b5550bc175fb4dc09403085627f9eb33143" + integrity sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A== + send@0.19.0: version "0.19.0" resolved "https://registry.yarnpkg.com/send/-/send-0.19.0.tgz#bbc5a388c8ea6c048967049dbeac0e4a3f09d7f8" @@ -11375,6 +11438,13 @@ toidentifier@1.0.1: resolved "https://registry.npmjs.org/toidentifier/-/toidentifier-1.0.1.tgz" integrity sha512-o5sSPKEkg/DIQNmH43V0/uerLrpzVedkUh8tGNvaeXpfpuwjKenlSox/2O/BTlZUtEe+JG7s5YhEz608PlAHRA== +topojson-client@^3.1.0: + version "3.1.0" + resolved "https://registry.yarnpkg.com/topojson-client/-/topojson-client-3.1.0.tgz#22e8b1ed08a2b922feeb4af6f53b6ef09a467b99" + integrity sha512-605uxS6bcYxGXw9qi62XyrV6Q3xwbndjachmNxu8HWTtVPxZfEJN9fd/SZS1Q54Sn2y0TMyMxFj/cJINqGHrKw== + dependencies: + commander 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