From d3d2bb547caccd2d217e5b77d62ea181f8e870c7 Mon Sep 17 00:00:00 2001 From: Tom Harrop Date: Wed, 27 Mar 2024 08:34:09 +1100 Subject: [PATCH] Add seqkit sort to existing seqkit suite (#5909) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * add seqkit sort * tiny changes --------- Co-authored-by: Björn Grüning --- tools/seqkit/seqkit_sort.xml | 81 +++++++++++++++++++ tools/seqkit/test-data/sort_output1.fastq.gz | Bin 0 -> 522 bytes tools/seqkit/test-data/sort_output2.fasta.gz | Bin 0 -> 3940 bytes tools/seqkit/test-data/sort_output3.fasta.gz | Bin 0 -> 3949 bytes tools/seqkit/test-data/sort_output4.fasta.gz | Bin 0 -> 3948 bytes tools/seqkit/test-data/sort_output5.fastq.gz | Bin 0 -> 522 bytes tools/seqkit/test-data/sort_output6.fastq.gz | Bin 0 -> 511 bytes 7 files changed, 81 insertions(+) create mode 100644 tools/seqkit/seqkit_sort.xml create mode 100644 tools/seqkit/test-data/sort_output1.fastq.gz create mode 100644 tools/seqkit/test-data/sort_output2.fasta.gz create mode 100644 tools/seqkit/test-data/sort_output3.fasta.gz create mode 100644 tools/seqkit/test-data/sort_output4.fasta.gz create mode 100644 tools/seqkit/test-data/sort_output5.fastq.gz create mode 100644 tools/seqkit/test-data/sort_output6.fastq.gz diff --git a/tools/seqkit/seqkit_sort.xml b/tools/seqkit/seqkit_sort.xml new file mode 100644 index 00000000000..6a98cbd9241 --- /dev/null +++ b/tools/seqkit/seqkit_sort.xml @@ -0,0 +1,81 @@ + + FASTA or FASTQ files + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +**What it does** + +Sort sequences (FASTA, FASTQ) by id, name, sequence, or length. + + + + diff --git a/tools/seqkit/test-data/sort_output1.fastq.gz b/tools/seqkit/test-data/sort_output1.fastq.gz new file mode 100644 index 0000000000000000000000000000000000000000..d88cbac741afa310788a3672d0fcba2a80cc56e5 GIT binary patch literal 522 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