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Add PsiCLASS #5469

Merged
merged 13 commits into from
Sep 26, 2023
Merged

Add PsiCLASS #5469

merged 13 commits into from
Sep 26, 2023

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gallardoalba
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@gallardoalba gallardoalba commented Sep 6, 2023

FOR CONTRIBUTOR:

  • - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • - License permits unrestricted use (educational + commercial)
  • - This PR adds a new tool or tool collection
  • - This PR updates an existing tool or tool collection
  • - This PR does something else (explain below)

@bgruening
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Go back to bed 😛

@gallardoalba gallardoalba marked this pull request as ready for review September 6, 2023 14:42
@gallardoalba gallardoalba changed the title Add psiclass Add PsiCLASS Sep 6, 2023
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@bgruening bgruening closed this Sep 26, 2023
@bgruening bgruening reopened this Sep 26, 2023
@bgruening bgruening merged commit 2dc6baa into galaxyproject:main Sep 26, 2023
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@gallardoalba gallardoalba deleted the Add_psiclas branch September 26, 2023 16:48
@gallardoalba
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gallardoalba commented Sep 27, 2023

After running the tool, it finished succefully, but it generates this stderr: sh: samtools: command not found.So, samtools seems to be required after all.
Galaxy history: https://usegalaxy.eu/u/gallardoalba/h/genome-wide-alternative-splicing-analysis-1

@gallardoalba
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After running the tool, it finished succefully, but it generates this stderr: sh: samtools: command not found.So, samtools seems to be required after all. Galaxy history: https://usegalaxy.eu/u/gallardoalba/h/genome-wide-alternative-splicing-analysis-1

I think the problem is that I didn't include the dependency in run in the recipe.

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3 participants