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Initial commit of revoluzer tools #5878

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merged 7 commits into from
Mar 19, 2024

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bernt-matthias
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@bernt-matthias bernt-matthias commented Mar 15, 2024

The first two of some older tools which are apparently still used (revoluzer is more or less what I produced during my PhD a long time ago) :) Probably the first gene order analysis tools for Galaxy (with limited applicability .. probably only mitochondrial genomes).

University has shut down the old websites that provided these tools. So like for MITOS I would like to go Galaxy (unlike Galaxy revoluzer is C/C++, i.e. no other dependencies).

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

tools/revoluzer/crex.xml Outdated Show resolved Hide resolved
tools/revoluzer/distmat.xml Outdated Show resolved Hide resolved
</conditional>
</inputs>
<outputs>
<data name="out" format="tabular"/>
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add column names as metadata?

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Metadata for outputs or not you decide :-)

@bernt-matthias bernt-matthias marked this pull request as draft March 16, 2024 14:33
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Found a bug.

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Last commit should work with bioconda/bioconda-recipes#46517

@bernt-matthias bernt-matthias marked this pull request as ready for review March 18, 2024 15:47
@bgruening bgruening merged commit 00e6389 into galaxyproject:main Mar 19, 2024
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2 participants