From 60cc8dc8ccee3208c7fb903f5477c3fb73aa221a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Mon, 4 Mar 2024 19:06:36 +0100
Subject: [PATCH 1/2] case-sensitive datatypes

---
 tools/deepvariant/deepvariant.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/deepvariant/deepvariant.xml b/tools/deepvariant/deepvariant.xml
index 8ce02000d41..fd69f4b1774 100644
--- a/tools/deepvariant/deepvariant.xml
+++ b/tools/deepvariant/deepvariant.xml
@@ -56,7 +56,7 @@
                 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" />
             </when>
         </conditional>
-        <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
+        <param argument="--reads" type="data" format="bam" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
         <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling">
             <option value="WGS">WGS: Illumina whole genome sequencing</option>
             <option value="WES">WES: Illumina whole exome sequencing</option>

From c911e43a764a1b3e1af519f8d40b624d505f9c1b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= <bjoern@gruenings.eu>
Date: Tue, 5 Mar 2024 08:32:47 +0100
Subject: [PATCH 2/2] Update macros.xml

---
 tools/deepvariant/macros.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/deepvariant/macros.xml b/tools/deepvariant/macros.xml
index e218cd666d8..795229a8f31 100644
--- a/tools/deepvariant/macros.xml
+++ b/tools/deepvariant/macros.xml
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.5.0</token>
-    <token name="@SUFFIX_VERSION@">0</token>
+    <token name="@SUFFIX_VERSION@">1</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
             <edam_topic>topic_0199</edam_topic>