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GenePattern

A Platform for Reproducible Bioinformatics

30 followers
San Diego, CA
http://genepattern.org/
@genepattern

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genepattern-notebook genepattern-notebook Public

Platform for integrating genomic analysis with Jupyter Notebooks.

Python 44 12
genepattern-server genepattern-server Public

The GenePattern Server web application

HTML 36 17
genepattern-python genepattern-python Public

GenePattern Python Library

Python 12 3

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Showing 10 of 236 repositories

spatialGE.STgradient Public
Expression spatial gradients based on https://github.com/FridleyLab/spatialGE

genepattern/spatialGE.STgradient’s past year of commit activity

R 0 0 0 0 Updated Nov 28, 2024
tfsites.VisualizeTFSitesOnSequences Public
Farley lab collaboration

genepattern/tfsites.VisualizeTFSitesOnSequences’s past year of commit activity

0 0 0 0 Updated Nov 27, 2024
tfsites.FindTfSitesAlteredBySequenceVariation Public
Farley Lab UCSD Collaboration

genepattern/tfsites.FindTfSitesAlteredBySequenceVariation’s past year of commit activity

Shell 0 BSD-3-Clause 0 0 0 Updated Nov 27, 2024
tfsites.NormalizeTfDNAAffinityData Public
Farley lab UCSD collaboration

genepattern/tfsites.NormalizeTfDNAAffinityData’s past year of commit activity

0 0 0 0 Updated Nov 27, 2024
tfsites.GenerateMotifDatabase Public
tfsites modules for defineBindingStites starting with Position Frequency Matrix from JASPAR

genepattern/tfsites.GenerateMotifDatabase’s past year of commit activity

Shell 0 0 0 0 Updated Nov 27, 2024
spatialGE.STenrich Public
Spatial enrichment of gene sets based on https://github.com/FridleyLab/spatialGE

genepattern/spatialGE.STenrich’s past year of commit activity

R 0 0 0 0 Updated Nov 25, 2024
tfsites.common_docker Public
Docker container for all the Farley lab tfsites suite of modules

genepattern/tfsites.common_docker’s past year of commit activity

Dockerfile 0 0 0 0 Updated Nov 25, 2024
common_module_code Public
This repository contains the shared code used by the GenePattern modules.

genepattern/common_module_code’s past year of commit activity

0 0 0 0 Updated Nov 25, 2024
AuDIT Public
AuDIT module

genepattern/AuDIT’s past year of commit activity

R 0 BSD-3-Clause 0 0 0 Updated Nov 21, 2024
Tangram Public
A method for mapping sc/snRNA-seq data to various forms of spatial data collected from the same region.

genepattern/Tangram’s past year of commit activity

Python 1 0 0 0 Updated Nov 19, 2024

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