From fa4e1cf9d1a110c481fbe182379dab274368d7da Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 19 Jul 2018 07:35:44 +0000 Subject: [PATCH] Minor layout --- bin/gemma-wrapper | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/bin/gemma-wrapper b/bin/gemma-wrapper index f632a60..d9c1461 100755 --- a/bin/gemma-wrapper +++ b/bin/gemma-wrapper @@ -6,7 +6,8 @@ # # Copyright (C) 2017,2018 Pjotr Prins -USAGE = "GEMMA wrapper example: +USAGE = " +GEMMA wrapper example: Simple caching of K computation with @@ -73,7 +74,7 @@ end options = { show_help: false, source: 'https://github.com/genetics-statistics/gemma-wrapper', version: version+' (Pjotr Prins)', date: Time.now.to_s, gemma_command: gemma_command, cache_dir: Dir.tmpdir() } opts = OptionParser.new do |o| - o.banner = "Usage: #{File.basename($0)} [options] -- [gemma-options]" + o.banner = "\nUsage: #{File.basename($0)} [options] -- [gemma-options]" o.on('--permutate n', Integer, 'Permutate by shuffling phenotypes') do |lst| options[:permutate] = lst @@ -176,7 +177,7 @@ info.call GEMMA_K_BANNER # Check gemma version GEMMA_COMMAND=options[:gemma_command] gemma_version_header = `#{GEMMA_COMMAND}`.split("\n").grep(/GEMMA|Version/)[0].strip -info.call "Using GEMMA ",gemma_version_header,"\n" +info.call "Using ",gemma_version_header,"\n" gemma_version = gemma_version_header.split(/[,\s]+/)[1] v_version, v_major, v_minor = gemma_version.split(".") info.call "Found #{gemma_version}, comparing against expected v0.#{GEMMA_V_MAJOR}.#{GEMMA_V_MINOR}"