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Commits on Dec 15, 2022

• Merge pull request #5 from ksinghal28/master

  Show description for a878376
  tmooney

  authored
  a878376

Commits on Dec 1, 2022

• Removing zipfile import as that was only needed for previous testing

  ksinghal28

  authored
  ebcc830

Commits on Nov 30, 2022

• Cleaning up code

  ksinghal28

  authored
  c5bc40c

• Reverting git clone to point to original repo

  ksinghal28

  authored
  62e068c

• Adding write argument to function

  ksinghal28

  authored
  3193898

• Create text file inside agfusion_results

  Show description for 76504de
  ksinghal28

  authored
  76504de

Commits on Nov 28, 2022

• Reverting to without zip, making directory in cromwell root

  ksinghal28

  authored
  dc59348

• Reverting to creating a zipfile

  ksinghal28

  authored
  04a27c9

Commits on Nov 23, 2022

• Commenting out lines that zip file

  ksinghal28

  committed
  aca6ca1

Commits on Oct 21, 2022

• KS-fixing bug in previous commit

  ksinghal28

  committed
  ad4962c

Commits on Oct 20, 2022

• KS-modifying parsers to (maybe) make zipfile in correct directory

  ksinghal28

  committed
  02275e7

Commits on Oct 16, 2022

• KS-adding print statements

  ksinghal28

  committed
  8f8c813

• KS- reverting dockerfile changes- might not need to install zipfile

  ksinghal28

  committed
  66fb511

• KS-adding commands to make a zip file

  ksinghal28

  committed
  7bb58ae

Commits on Oct 14, 2022

• KS-changing check data to have a warning message

  ksinghal28

  committed
  d0fb22c

Commits on Oct 13, 2022

• KS-changing to do nothing if no fusions found

  ksinghal28

  committed
  f39a223

• KS-editing dockerfile to use my docker

  ksinghal28

  committed
  7db35c2

• KS- editing parsers.py to make it soft error at check error

  ksinghal28

  committed
  e197b2e

Commits on May 16, 2022

• Merge pull request #4 from susannasiebert/1.3.1-ensembl-105

  Show description for c839a27
  johnegarza

  authored
  c839a27

• Handle gene entries in the input file that don't contain the gene name

  susannasiebert

  committed
  6a0570c

Commits on Apr 25, 2022

• Add zip for wdl workflows

  johnegarza

  committed
  8a676cd

Commits on Apr 22, 2022

• Update README and bump version for new docker images

  johnegarza

  committed
  c6c2b10

Commits on Apr 21, 2022

• Merge pull request #3 from malachig/master

  Show description for f8b5982
  chrisamiller

  authored
  f8b5982

• update git repo url

  malachig

  committed
  d7c5ddf

• support for latest mouse builds

  malachig

  committed
  278d20a

• support for latest mouse builds

  malachig

  committed
  9369906

• support for latest mouse builds

  malachig

  committed
  7fde1ef

• updates for ensembl 105

  malachig

  committed
  83fbdac

Commits on Mar 9, 2022

• Merge pull request #2 from johnegarza/add_dockerfile

  Show description for 90ae305
  johnegarza

  authored
  90ae305

Commits on Mar 2, 2022

• Despite listing v95 for download, it is not available. Reverting to build from source.

  johnegarza

  committed
  a6c3508

• Build agfusion db from source, for future reference

  johnegarza

  committed
  28683e0

• First draft, based on previously tested rachelbj/agfusion:1.1

  johnegarza

  committed
  c5d1ec6

Commits on Mar 1, 2022

• Merge pull request #1 from susannasiebert/patch

  Show description for ab770af
  susannasiebert

  authored
  ab770af

Commits on Feb 22, 2022

• Small changes to support newer versions of BioPython that removed Bio.Alphabet

  susannasiebert

  committed
  5e0f579

• Use csv.DictReader to read in STAR-Fusion input file to support different versions

  susannasiebert

  committed
  6e756f2

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