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header of each column and means #2

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Shicheng-Guo opened this issue Jul 6, 2019 · 1 comment

Shicheng-Guo commented Jul 6, 2019

Hi sciclone author:

Is there any possibility to show little more information about the header for each file (matrix).
Is there any possibility to show which software or R packages are frequently to be used to prepare these input files for sciclone.

Thanks

Collaborator

chrisamiller commented Jul 8, 2019

Are your questions about the input files or output files?
Inputs generally involve using variant callers of your choice, followed by running bam-readcount to get readcounts and VAFs.

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