docker-compose-traefik.yml

 version: '2'

 services:

    traefik:
        # In production, port 8080 should not be open
        image: traefik:1.7
        ports:
                - "8080:8080"
                - "5000:80"
        volumes:
                - ${BIOMAJ_DIR}/proxy/traefik/traefik.toml:/etc/traefik/traefik.toml

    biomaj-internal-proxy:
        # In production, ports should not be open
        image: traefik:1.7
        ports:
                #- "8082:8080"
                - "8081:80"
        volumes:
                - ${BIOMAJ_DIR}/proxy/traefik/traefik-int.toml:/etc/traefik/traefik.toml

    biomaj-mongo:
        image: mongo
        volumes:
            - ${BIOMAJ_DIR}/mongo:/data/db

    biomaj-redis:
        image: redis
        volumes:
            - ${BIOMAJ_DIR}/redis:/data

    biomaj-elasticsearch:
        image: "elasticsearch:2"
        command: "elasticsearch -Des.cluster.name='biomaj'"
        volumes:
            - ${BIOMAJ_DIR}/elasticsearch:/usr/share/elasticsearch/data


    biomaj-rabbitmq:
        image: rabbitmq
        hostname: biomaj-rabbitmq
        command: rabbitmq-server
        entrypoint: ""
        volumes:
            - ${BIOMAJ_DIR}/rabbitmq:/var/lib/rabbitmq
            - ${BIOMAJ_DIR}/biomaj-config/rabbitmq.config:/etc/rabbitmq/rabbitmq.config:ro
        environment:
            - RABBITMQ_DEFAULT_USER=biomaj
            - RABBITMQ_DEFAULT_PASS=biomaj

    biomaj-consul:
        image: hashicorp/consul:1.17
        hostname: consulnode1
        ports:
            - "8400:8400"
            - "8500:8500"
            - "8600:53"
        environment:
            - INFLUXDB_DB=biomaj
            - INFLUXDB_USER=biomaj
            - INFLUXDB_PASSWORD=biomaj
        command: agent -dev -client 0.0.0.0 -log-level info

    biomaj-prometheus:
        image: prom/prometheus:v1.8.2
        ports:
            - "9090:9090"
        volumes:
            - ${BIOMAJ_DIR}/biomaj-config/prometheus.yml:/etc/prometheus/prometheus.yml
        depends_on:
            - biomaj-consul
        command:
            - '-storage.local.retention=720h'
            - '-config.file=/etc/prometheus/prometheus.yml'

    biomaj-influxdb:
        image: influxdb
        volumes:
            - ${BIOMAJ_DIR}/influxdb:/var/lib/influxdb

    #biomaj-internal-proxy:
    #    image: osallou/biomaj-proxy
    #    # To be deleted in production
    #    ports:
    #        - "5080:80"
    #    volumes:
    #        - ${BIOMAJ_DIR}/proxy/internal:/proxy:ro
    #        - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj
    #    depends_on:
    #        - biomaj-consul

    #biomaj-public-proxy:
    #    image: osallou/biomaj-proxy
    #    volumes:
    #        - ${BIOMAJ_DIR}/proxy/public:/proxy:ro
    #        - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
    #    ports:
    #        - "5000:80"
    #    depends_on:
    #        - biomaj-consul

    biomaj-user-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajuser
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; gunicorn -b 0.0.0.0:5000 --log-config /etc/biomaj/production.ini biomaj_user.wsgi:app"


    biomaj-download-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajdownload
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; gunicorn -c /etc/biomaj/gunicorn_conf.py -b 0.0.0.0:5000 --log-config /etc/biomaj/production.ini biomaj_download.biomaj_download_web:app"

    biomaj-download-message:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajdownload
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; python3 /root/biomaj-download/bin/biomaj_download_consumer.py"

    biomaj-process-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
            - ${BIOMAJ_DIR}/biomaj/process:/opt/conda/envs
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajprocess
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; gunicorn -c /etc/biomaj/gunicorn_conf.py -b 0.0.0.0:5000 --log-config /etc/biomaj/production.ini biomaj_process.biomaj_process_web:app"

    biomaj-process-message:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
            - ${BIOMAJ_DIR}/biomaj/process:/opt/conda/envs
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajprocess
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
            - BIOMAJ_DIR=${BIOMAJ_DATA_DIR}
            - DOCKER_URL=${DOCKER_URL}
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; python3 /root/biomaj-process/bin/biomaj_process_consumer.py"

    biomaj-daemon-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajdaemon
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-influxdb
            - biomaj-elasticsearch
            - biomaj-user-web
            - biomaj-download-web
            - biomaj-process-web
        command: bash -c "sleep 10 ; gunicorn -c /etc/biomaj/gunicorn_conf.py -b 0.0.0.0:5000 --log-config /etc/biomaj/production.ini biomaj_daemon.daemon.biomaj_daemon_web:app"

    biomaj-daemon-message:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajdaemon
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-elasticsearch
            - biomaj-user-web
            - biomaj-download-web
            - biomaj-process-web
        command: bash -c "sleep 10 ; python3 /root/biomaj-daemon/bin/biomaj_daemon_consumer.py"

    biomaj-watcher-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-rabbitmq
            - biomaj-redis
            - biomaj-user-web
            - biomaj-daemon-web
            - biomaj-elasticsearch
        command: bash -c "sleep 10 ; /root/watcher.sh"

    biomaj-cron:
        image: osallou/biomaj-cron
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
        depends_on:
            - biomaj-daemon-web

    biomaj-ftp:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_USER_PASSWORD=${BIOMAJ_USER_PASSWORD}
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajftp
            - RABBITMQ_USER=biomaj
            - RABBITMQ_PASSWORD=biomaj
            - MASQUERADE_ADDRESS=${MASQUERADE_ADDRESS}
        depends_on:
            - biomaj-mongo
            - biomaj-consul
            - biomaj-user-web
            - biomaj-elasticsearch
        ports:
            - "2121:21"
        command: bash -c "sleep 10 ; python3 /root/biomaj-ftp/bin/biomaj_ftp_service.py"

    biomaj-release-web:
        image: osallou/biomaj-docker
        volumes:
            - ${BIOMAJ_DIR}/biomaj:/var/lib/biomaj/data
        environment:
            - BIOMAJ_CONFIG=/etc/biomaj/config.yml
            - REDIS_PREFIX=biomajrelease
            - REDIS_DAEMON_PREFIX=biomajdaemon
        depends_on:
            - biomaj-consul
            - biomaj-redis
            - biomaj-daemon-web
            - biomaj-daemon-message
        command: bash -c "sleep 10 ; python3 /root/biomaj-release/bin/biomaj_release.py"