pyproject.toml

[tool.poetry]
name = "pygpseq"
version = "3.4.1"
description = "A GPSeq image analysis package"
authors = ["Gabriele Girelli <gigi.ga90@gmail.com>"]
license = "MIT"
readme = "README.md"
homepage = "https://github.com/ggirelli/pygpseq"
repository = "https://github.com/ggirelli/pygpseq"
keywords = ["microscopy", "image", "analysis", "bioimaging", "nucleus", "segmentation", "conversion"]
classifiers = [
  'Development Status :: 5 - Production/Stable',
  "Environment :: Console",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Bio-Informatics",
  "Operating System :: Unix",
  "Operating System :: POSIX :: Linux",
  "Programming Language :: Python :: 3.6",
]
include = ["CHANGELOG.md", "LICENSE"]

[tool.poetry.dependencies]
python = ">=3.6,<3.7"
ggc = "0.0.3"
czifile = "0.1.5"
Cython = "0.29.5"
Jinja2 = "2.11.3"
joblib = "0.11"
matplotlib = "2.2.2"
nd2reader = "3.1.0"
numpy = "1.16.1"
pandas = "0.24.1"
scipy = "1.2.1"
scikit-image = "0.14.2"
seaborn = "0.9.0"
tifffile = "2019.2.10"
tqdm = "4.31.1"
weasyprint = "45"

[tool.poetry.dev-dependencies]
black = "18.9b0"

[tool.poetry.scripts]
"czi_to_tiff" = "pygpseq.scripts.czi_to_tiff:run"
"nd2_to_tiff" = "pygpseq.scripts.nd2_to_tiff:run"
"gpseq_anim" = "pygpseq.scripts.gpseq_anim:run"
"gpseq_fromfish" = "pygpseq.scripts.gpseq_fromfish:run"
"gpseq_fromfish_merge" = "pygpseq.scripts.gpseq_fromfish_merge:run"
"tiff_auto3dseg" = "pygpseq.scripts.tiff_auto3dseg:run"
"tiff_findoof" = "pygpseq.scripts.tiff_findoof:run"
"tiff_split" = "pygpseq.scripts.tiff_split:run"
"tiff_desplit" = "pygpseq.scripts.tiff_desplit:run"
"tiffcu" = "pygpseq.scripts.tiffcu:run"

[build-system]
requires = ["poetry>=0.12"]
build-backend = "poetry.masonry.api"