diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 15e59dd3923..6ea98f2378c 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -858,28 +858,6 @@ jobs: if: env.SENTIEON_ENCRYPTION_KEY != null && env.SENTIEON_LICENSE_MESSAGE != null run: | nextflow secrets set SENTIEON_AUTH_DATA $(python3 tests/modules/nf-core/sentieon/license_message.py encrypt --key "${{ secrets.SENTIEON_ENCRYPTION_KEY }}" --message "${{ secrets.SENTIEON_LICENSE_MESSAGE }}") - # FIXME docker debugging - # - name: ssh debugging - # uses: Warpbuilds/action-debugger@v1.3 - # - name: Verify Docker Environment - # run: | - # echo "Current user: $(whoami)" - # echo "User ID: $(id -u)" - # echo "XDG_RUNTIME_DIR: $XDG_RUNTIME_DIR" - # echo "DOCKER_HOST: $DOCKER_HOST" - - # # Check service status - # systemctl --user status docker || true - - # # Try restarting if needed - # if ! systemctl --user is-active docker; then - # echo "Docker not active, attempting to start..." - # systemctl --user start docker - # sleep 5 - # fi - - # # Test Docker - # docker ps # Test the module - name: Run nf-test if: ${{ matrix.path != '' }} @@ -898,7 +876,7 @@ jobs: NFT_WORKDIR=~ \ nf-test test \ - --profile=${{ matrix.profile }} \ + --profile=${{ matrix.profile }},gpu \ --tap=test.tap \ --verbose \ ${{ matrix.path }}