Unresolvable dependency when testing on Python 3.9

[bgyori]

See: https://github.com/bgyori/indra_cogex/actions/runs/4298454058/jobs/7492573390. For some reason compatible versions for some dependencies cannot be resolved resulting in a failed install. @cthoyt at first glance the issue might indirectly involve bioregistry since the install attempts to iterate through a large number of versions to find one.

[cthoyt]

Seems like the issue is resulting from pinning bioregistry<0.5 in this repository. can we remove that pin?

Looking around, PyOBO has a pin bioregistry>=0.4.29 which is compatible.

Possibility is that statsmodels pins scipy/numpy https://github.com/statsmodels/statsmodels/blob/main/requirements.txt, but this also seems consistent.

I checked gilda and that doesn't seem right either.. I wonder if there is a tool for auditing dependencies

[cthoyt]

After testing, it does seem that the Bioregistry is the issue, though I'm not sure why. I checked in https://github.com/biopragmatics/bioregistry/blob/v0.5.0/setup.cfg to see if there were any installation reasons and there don't appear to be any core requirements with strange properties.