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Bam file not generated using speedseq align #146

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kghimire09 opened this issue Apr 30, 2021 · 0 comments

kghimire09 commented Apr 30, 2021

Hi I Used this command:
speedseq align \

-o 5863-DD-3
-R "@rg\tID:5863-DD-3\tSM:5863-DD-3\tLB:ILLUMINA"
assembly38.fasta
5863-DD-3-R1_001.fastq.gz
5863-DD-3-R2_001.fastq.gz

I have the discordant and splitters bams but I do not have the main bam file. Could you please help me with this.

Thank you

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