v1.0.2

What's Changed

• JOSS-requested affiliation edits by @wsdewitt in #48

Full Changelog: v1.0.0...v1.0.2

v1.0.1

This is a patch with no changes. It triggers a consistent pypi release and zenodo archive.

v1.0.0

Summary

• Versioning for JOSS paper in response to Post-Review Checklist: openjournals/joss-reviews#5227 (comment)
• Triggers Zenodo archive with DOI
• PR: JOSS review by @wsdewitt in #47

Full Changelog: v0.7.1...v1.0.0

v0.7.1

What's Changed

• JOSS prereview by @wsdewitt in #40
• Require python>=3.8

Full Changelog: v0.7.0...v0.7.1

v0.7.0

Adds a draft paper to be submitted to JOSS.

What's Changed

• JOSS paper by @wsdewitt in #39

Full Changelog: v0.6.4...v0.7.0

v0.6.4

What's Changed

• issue 36: dealing with missing genotypes with mutyper variants by @Lukez-pi in #37
• numpy implementation for spectra by @Lukez-pi in #38

Full Changelog: v0.6.3...v0.6.4

v0.6.3

What's Changed

• Changed the 'number' type of 'mutation type' to A in the VCF header by @Lukez-pi in #35

New Contributors

• @Lukez-pi made their first contribution in #35

Full Changelog: v0.6.2...v0.6.3

v0.6.2

What's Changed

• Don't count phased==True toward genotypes by @wsdewitt in #34
• resolves #30 (again)

Full Changelog: v0.6.1...v0.6.2

v0.6.1

What's Changed

• Added a fix for adding too many counts when the GT is unknown by @mrvollger in #31
• Move docs build from the default branch to an orphan branch, and workflow to build on push to master by @wsdewitt in #32
• CLI tests, and more genotype fixes by @wsdewitt in #33

Full Changelog: v0.6.0...v0.6.1

v0.6.0: Docstweaks (#29)

New features

• logging from CLI via the --verbose option
• improved handling of compressed fastas
• updated docs

Developer notes

• python code should be formatted with Black. This will be checked in CI.
• see new developer tools docs page: https://harrispopgen.github.io/mutyper/developer.html#developer-tools