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amlhpc

Package to provide a -just enough- Slurm or PBS experience on Azure Machine Learning. Use the infamous sbatch/qsub/sinfo to submit jobs and get insight into the state of the HPC system through a familiar way. Allow applications to interact with AML without the need to re-program another integration.

For the commands to function, the following environment variables have to be set:

SUBSCRIPTION=<guid of you Azure subscription e.g. 12345678-1234-1234-1234-1234567890ab>
CI_RESOURCE_GROUP=<name of the resource group where your Azure Machine Learning Workspace is created>
CI_WORKSPACE=<name of your Azure MAchine Learning Workspace>

In the Azure Machine Learning environment, the CI_RESOURCE_GROUP and CI_WORKGROUP are normally set, so you only need to export SUBSCRIPTION.

sinfo

Show the available partitions. sinfo does not take any options.

(azureml_py38) azureuser@login-vm:~/cloudfiles/code/Users/username$ sinfo
PARTITION       AVAIL   VM_SIZE                 NODES   STATE
f16s            UP      STANDARD_F16S_V2        37
hc44            UP      STANDARD_HC44RS         3
hbv2            UP      STANDARD_HB120RS_V2     4
login-vm        UP      STANDARD_DS12_V2        None

squeue

Show the queue with historical jobs. squeue does not take any options.

(azureml_py38) azureuser@login-vm:~/cloudfiles/code/Users/username$ squeue
JOBID                           NAME            PARTITION       STATE   TIME
crimson_root_52y4l9yfjd         sbatch  	f16s
polite_lock_v8wyc9gnx9          runscript.sh    f16s

sbatch

Submit a job, either as a command through the --wrap option or a (shell) script. sbatch uses several options, which are explained in sbatch --help. Quite a bit of sbatch options are supported such as running multi-node MPI jobs with the option to set the amount of nodes to be used. Also array jobs are supported with the default --array option.

Some additional options are introduced to support e.g. the data-handling methods available in AML. These are explaned in data.md.

(azureml_py38) azureuser@login-vm:~/cloudfiles/code/Users/username$ sbatch -p f16s --wrap="hostname"
gifted_engine_yq801rygm2

(azureml_py38) azureuser@login-vm:~/cloudfiles/code/Users/username$ sbatch --help
usage: sbatch [-h] [-a ARRAY] -p PARTITION [-N NODES] [-w WRAP] [script]

sbatch: submit jobs to Azure Machine Learning

positional arguments:
  script                script to be executed

optional arguments:
  -h, --help            show this help message and exit
  -a ARRAY, --array ARRAY
                        index for array jobs
  -p PARTITION, --partition PARTITION
                        set compute partition where the job should be run. Use <sinfo> to view available partitions
  -N NODES, --nodes NODES
                        amount of nodes to use for the job
  -w WRAP, --wrap WRAP  command line to be executed, should be enclosed with quotes

If you encounter a scenario or option that is not supported yet or behaves unexpected, please create an issue and explain the option and the scenario.