diff --git a/Dockerfile b/Dockerfile index 978448a..34865a8 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,6 +1,6 @@ FROM condaforge/mambaforge:latest LABEL io.github.snakemake.containerized="true" -LABEL io.github.snakemake.conda_env_hash="863a7181b5107fe791d421b9bb8ceedb03b5ba072875a7becaf3cb11b27c9278" +LABEL io.github.snakemake.conda_env_hash="4d3c90be68c3937f263e5072be1470fc478dfe58a9c3aff38463fb8fb03b31bf" ENV DEBIAN_FRONTEND=noninteractive RUN apt update && apt install -y build-essential libz-dev && rm -rf /var/lib/apt/lists/* @@ -112,27 +112,26 @@ COPY workflow/envs/susier.yml /conda-envs/be316e9967fe3846694829a2f8f63147/envir # Conda environment: # source: workflow/scripts/gwaspipe/environment.yml -# prefix: /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e +# prefix: /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8 # name: gwaspipe # channels: # - conda-forge # - defaults # dependencies: # - python<=3.10 -# - pip==23.3.2 +# - pip==24 # - mscorefonts # - pip: -# - gwaslab==3.4.38 +# - gwaslab==3.4.43 # - pandas==2.2 # - pyarrow==15.0 # - ruamel.yaml==0.18.5 # - click==8.1.7 # - loguru==0.7.2 # - cloup==3.0.4 -# - mpmath==1.3.0 # - pybedtools==0.9.1 -RUN mkdir -p /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e -COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e/environment.yaml +RUN mkdir -p /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8 +COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8/environment.yaml # Step 2: Generate conda environments @@ -142,5 +141,5 @@ RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --fil mamba env create --prefix /conda-envs/a9b8ccc53333def92898879edc6df0ca --file /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml && \ mamba env create --prefix /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05 --file /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml && \ mamba env create --prefix /conda-envs/be316e9967fe3846694829a2f8f63147 --file /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml && \ - mamba env create --prefix /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e --file /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e/environment.yaml && \ + mamba env create --prefix /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8 --file /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8/environment.yaml && \ mamba clean --all -y