Colocalization of two proteins

[dariushghasemi]

Here we perform colocalization analysis using the coloc v5.2.3 (2023-09-22).
We follow some steps here:

• we cross tabulate credible set SNPs for two independent SNPs for two different proteins,
• once there is s common SNP between the two credible sets, we store corresponding conditional data of the two independent SNPs.
• repeat this analysis for all combinations of independent signals from one proteins against all other proteins to attain all possible combinations of the traits we need to perform coloc,
• conduct main colocalization analysis of two traits using the input created in previous steps.

[dariushghasemi]

The coloc analysis with previous version of the Nicola's pipe has been run successfully. Here we try to update the function computing l-ABF to the latest version removing NULL from the conditional dataset.