bulk-atac-seq-pipeline-manifest.json

[
	{
		"pattern": "alignment_qc\\.json",
		"description": "Alignment quality control metrics, in JSON format",
		"edam_ontology_term": "EDAM_1.24.format_3464"
	},
	{
		"pattern": "(?P<filename>.*)_fastqc\\.html",
		"description": "FastQC report for {filename}.fastq, HTML version",
		"edam_ontology_term": "EDAM_1.24.format_2331"
	},
	{
		"pattern": "(?P<filename>.*)_fastqc\\.zip",
		"description": "FastQC report for {filename}.fastq, zip version",
		"edam_ontology_term": "EDAM_1.24.format_2333"
	},
    {
        "pattern": "NA_peaks\\.xls",
        "description": "Tabular file containing peak data",
        "edam_ontology_term" : "EDAM_1.24.format_3648"

    },
    {
        "pattern": "NA_peaks\\.narrowPeak",
        "description": "BED6+4 format file which contains peak locations, peak summit, p-value, and q-value",
        "edam_ontology_term" : "EDAM_1.24.format_3613"

    },
    {
        "pattern": "NA_summits\\.bed",
        "description": "BED file containing summit locations for every peak",
        "edam_ontology_term" : "EDAM_1.24.format_3003"

    },
    {
        "pattern": "NA_model\\.r",
        "description": "An r script for generating a pdf of model based on data",
        "edam_ontology_term" : "EDAM_1.25.format_3999"

    },
    {
        "pattern": "NA_treat_pileup.bdg",
        "description": "bedGraph format for treatment sample",
        "edam_ontology_term" : "EDAM_1.24.format_3583"

    },
    {
        "pattern": "NA_control_lambda\\.bdg",
        "description": "bedGraph format for input sample",
        "edam_ontology_term" : "EDAM_1.24.format_3583"
    }
]