sc_atac_seq_prep_process_analyze-manifest.json

[
	{
		"pattern": "qc_report\\.json",
		"description": "Quality control report, in JSON format",
		"edam_ontology_term": "EDAM_1.24.format_3464",
		"is_qa_qc": true
	},
	{
		"pattern": "genome_build\\.json",
		"description": "Genome build information in JSON format",
		"edam_ontology_term": "EDAM_1.24.format_3464"
	},
	{
		"pattern": "(?P<filename>.*)_fastqc\\.html",
		"description": "FastQC report for {filename}.fastq, HTML version",
		"edam_ontology_term": "EDAM_1.24.format_2331",
		"is_qa_qc": true
	},
	{
		"pattern": "(?P<filename>.*)_fastqc\\.zip",
		"description": "FastQC report for {filename}.fastq, zip version",
		"edam_ontology_term": "EDAM_1.24.format_2333",
		"is_qa_qc": true
	},
	{
		"pattern": "cell_by_gene\\.h5ad",
		"description": "Cell by gene matrix (sparse, and smoothed with MAGIC), in H5AD format",
		"edam_ontology_term": "EDAM_1.24.format_3590",
		"is_data_product": true
	},
	{
		"pattern": "cell_by_bin\\.h5ad",
		"description": "Sparse cell by bin matrix, in H5AD format",
		"edam_ontology_term": "EDAM_1.24.format_3590",
		"is_data_product": true
	},
	{
		"pattern": "frags\\.sort\\.bed\\.gz",
		"description": "Fragment file from Sinto",
		"edam_ontology_term": "EDAM_1.24.format_3003"
	},
	{
		"pattern": "peaks\\.bed",
		"description": "Peaks called across entire data set",
		"edam_ontology_term": "EDAM_1.24.format_3003",
		"is_data_product": true
	},
	{
		"pattern": "umap_coords_clusters\\.csv",
		"description": "Per-cell UMAP coordinates and cluster assignments",
		"edam_ontology_term": "EDAM_1.24.format_3752"
	}
]