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@idptools

idptools

A collection of tools developed by the Holehouse Lab for the analysis of protein sequence information, with an emphasis on disordered proteins

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  1. sparrow sparrow Public

    Next generation sequence parameter library for proteins

    Python 26 3

  2. metapredict metapredict Public

    A machine learning based protein disorder predictor.

    Python 21 5

  3. parrot parrot Public

    Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.

    Python 18 2

  4. goose goose Public

    A python package for generating disordered sequences and disorder sequence variants.

    Python 8 1

  5. dodo dodo Public

    DODO is a Python package for taking an AF2 structure and redesigning the IDRs to look more 'IDR like'.

    Python 6 1

  6. finches finches Public

    FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs

    Jupyter Notebook 5 1

Repositories

Showing 10 of 11 repositories
  • goose Public

    A python package for generating disordered sequences and disorder sequence variants.

    idptools/goose’s past year of commit activity
    Python 8 MIT 1 0 0 Updated Dec 9, 2024
  • finches Public

    FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs

    idptools/finches’s past year of commit activity
    Jupyter Notebook 5 MIT 1 1 0 Updated Dec 8, 2024
  • metapredict Public

    A machine learning based protein disorder predictor.

    idptools/metapredict’s past year of commit activity
    Python 21 MIT 5 0 0 Updated Nov 14, 2024
  • sparrow Public

    Next generation sequence parameter library for proteins

    idptools/sparrow’s past year of commit activity
    Python 26 MIT 3 0 0 Updated Nov 11, 2024
  • dodo Public

    DODO is a Python package for taking an AF2 structure and redesigning the IDRs to look more 'IDR like'.

    idptools/dodo’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Oct 22, 2024
  • parrot Public

    Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.

    idptools/parrot’s past year of commit activity
    Python 18 MIT 2 1 0 Updated Aug 29, 2024
  • idpcolab Public

    A centralized location to link various IDP-centric Google colab notebooks

    idptools/idpcolab’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 22, 2024
  • finches-colab Public

    Repository for user-facing colab notebooks that use FINCHES

    idptools/finches-colab’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Jul 16, 2024
  • flamingo Public

    Repo for running and analyzing simulations of IDR motifs bound to folded domains

    idptools/flamingo’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 23, 2024
  • afrc Public

    Implementation of our reference polymer model for an unfolded protein as an ideal chain

    idptools/afrc’s past year of commit activity
    Python 1 LGPL-3.0 0 1 0 Updated Mar 6, 2023
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