This repository contains an exemplary implementation of the DeePSC model proposed in "DeePSC - deep learning-based decision support for the diagnosis of primary sclerosing cholangitis on 2D magnetic resonance cholangiopancreatography".
Install dependencies
# clone project
git clone https://github.com/FabianWesth/DeePSC
cd DeePSC
# create conda environment
conda create -n deepsc python=3.6 -y
conda activate deepsc
# OR
# create virtual environment
python3.6 -m venv .venv
source .venv/bin/activate
# install python requirements
pip install -r requirements.txtTrain DeePSC ensemble model
# train
python deepsc.py