Checklist errors

inbo · Aug 22, 2024 · 7cbda5e · 7cbda5e
1 parent 7e16ec5
commit 7cbda5e
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/source/_verkenning.Rmd b/source/_verkenning.Rmd
@@ -77,7 +77,7 @@ venn({{group}}, "month")
 ### Alpha diversiteit
 
 ```{r {{group}}-richness}
-{{group}}_richness <- {{group}} %>%
+{{group}}_richness <- {{group}} %>% # nolint
   group_by(
     location_code,
     sampling_site_cd,

diff --git a/source/data_analysis_spring_2023.Rmd b/source/data_analysis_spring_2023.Rmd
@@ -16,6 +16,8 @@ editor_options:
 ```{r setup, include=FALSE}
 library(knitr)
 opts_chunk$set(message = FALSE, warning = FALSE)
+opts_knit$set(
+  root.dir = here::here("source"))
 options(scipen = 10)
 
 library(RODBC)
@@ -42,7 +44,7 @@ conflicted::conflict_prefer("layout", "plotly")
 
 ```{r venn-function}
 venn <- function(data, group, count_id = "species_nm") {
-  require(ggplot2)
+  require(ggplot2) # nolint
 
   groups <- data %>%
     distinct(!!sym(group)) %>%
@@ -802,7 +804,7 @@ flowers <- flowers |>
 
 ```{r}
 model1 <- glmmTMB(
-  n_species_ap ~ number_of_floral_units + location_code + maand,
+  n_ind_ap ~ log(number_of_floral_units + 1) + location_code + maand,
   ziformula = ~ 1,
   family = "poisson",
   na.action = na.exclude,