Skip to content

Latest commit

 

History

History
131 lines (110 loc) · 7.6 KB

CHANGELOG.md

File metadata and controls

131 lines (110 loc) · 7.6 KB
Raw

1.4.5

  • Update results table with expanded export modal functionality to support wider range of formats, preview and modifying contents

1.4.4

  • Update Google Analytics from Universal Tracking (will be phased out July 2023) to GA4

1.4.3

  • Handle constraining attributes of type boolean
  • Allow constraining with custom value when possible values
  • Fix unable to set idresolver options when linking in
  • Display tabs on templates when public or owned by user
  • Make list authorized/public tabs both visible, and fix filtering
  • Homepage templates: Fallback if none are ranked
  • Collapse the arrows in homepage template names
  • Only enable oauth login when on default mine
  • Use summaryfields when displaying search result attributes
  • Report page: Do not use attribute of ref/coll of class for title
  • Update to result tables
    • Make column summary shorter in height to avoid buttons ending up off-screen on smaller monitors
    • Make cell an external link if it's a URL

1.4.2

  • Make mine logo and name prominent in header, moving Bluegenes logo to the credits section at the bottom of the home page
  • Ensure template constraints are removed from template queries displayed on report pages
  • Reduce p-value exponential decimal places to 2 on enrichment results displayed on results page
  • Improve support for HTTP clients using POST portal.do
  • Fix incorrect counts when saving a list from some templates or custom query results #797
    • This would also lead to additional items in the saved list, not present in the original result table
    • These additional items would also be passed onto visualisation tools

1.4.1

  • Fix various crashes that occur when connected to a mine without any preferredbagtypes in model

1.4.0

  • Improvements and bugfixes for query builder
    • Use displayName for classes in Data Browser
    • More clearly convey empty classes in Data Browser
    • Do not show empty classes in QB root class dropdown
    • Distinguish reverse references by showing them top of list with an arrow
    • Fix outer join not being removed when class with it is removed from view
    • Fix crash caused by adding or summarising descendent of class with type/subclass constraint
    • Rename Summary buttons to Add summary
  • Open first extant tab in upload page save step when matches tab isn't present
  • Make Back To Template button visible on results page after running template, return to templates page with the template still active
  • Autofocus search input on search page
  • Add clear button to region search page
  • Re-introduce old portal.do linking in API for directly opening upload page with specified IDs resolved

1.3.0

  • Support for creating templates from query builder page
  • More features on templates page
    • Edit template button, sending you to the query builder with your template loaded
    • Reset button to set constraints back to default
    • Delete button with option to undo deletion from alert (REQUIRES INTERMINE 5.0.4+)
    • Web service URL when viewing a template
    • Improved fuzziness of template text filter and visual look of the filter panel
    • New filter for showing templates owned by the logged in user (REQUIRES INTERMINE 5.0.4+)
  • Admin page has been split into 3 sections: report, home and templates (new)
    • Manage templates component (REQUIRES INTERMINE 5.0.4+) gives you an overview of the templates you own, with the option to
      • view a template on the templates page
      • export a template to XML
      • precompute a template
      • summarise a template
      • edit tags of a template
      • export multiple templates to XML (using checkboxes)
      • delete multiple templates (using checkboxes)
    • Import templates component allows you to paste in the XML of previously exported templates, and add them to your account
  • Customise BG home page and footer using web.properties (see #765 or documentation) (REQUIRES INTERMINE 5.0.4+)
  • Able to set custom non-root deploy path with :bluegenes-deploy-path in config
  • Able to use a different service root for BG backend with :bluegenes-backend-service-root in config
  • New 404 catch-all page replacing the Jetty error page
  • Use only summary fields instead of union of summary fields and all attributes of class, for report page summary
  • Much less verbose and more readable errors when BG is started with an invalid config/envvars
  • Better error messages when something goes wrong when using Bluegenes tool store
  • Limit length of report summary text with show more button
  • Fix recently created column for list constraint not working properly
  • Fix crash when receiving invalid bg-properties layout.report (for customised report layouts)
  • Fix report page layout config unable to grow beyond a specific size (REQUIRES INTERMINE 5.0.4+)

1.2.1

  • Fix authentication errors with 5XX response codes not being handled

1.2.0

  • Cache busting for Tools' dist files (browser should immediately catch up when a tool is updated)
  • Improved RDF support REQUIRES INTERMINE TBD
    • Option to export results in N-triples and RDF
    • Support RDF representation for permanent URLs
    • Static HTML header link to RDF representation in report pages
  • Support downloading of enrichment results
  • Vastly improved region search page
    • Fix features missing in results when fully encompassing search region
    • Graph showing location of features relative to min and max loci of search region
    • Show symbols for features
    • Buttons to export results of one or all search regions in various formats, including opening the features in an im-table
    • Dropdown to create list by feature type, for one or all search regions
    • Interbase coordinates
    • Strand-specific search
    • Specify strand explicitly using chormosome:start:end:strand notation
    • Sliders to extend search regions on one or both sides
    • Restrict organism dropdown to only those that have chromosome data
    • Use configured default organism for organism dropdown initial value
  • Show mine release version on home page below mine name
  • Restrict Other Mines section on gene report pages to only show homologues for main organisms of mine (uses organisms saved for mine on InterMine registry)
  • Show strand in summary for sequence feature report pages (includes descendents, e.g. gene)
  • Show mines incompatible with BlueGenes as external links, which means
    • registry mines below API version 27
    • registry mines using unsecured HTTP when BlueGenes is hosted on HTTPS
    • additional mines (specified in config.edn) with :external true
  • Support specifying a description in the config.json for a Tool, shown in info popover in header of tool (can be overridden by setting a description in the report page layout editor)

1.1.0

  • Add missing enrichment features to panel on results page
    • Specifying list as background population REQUIRES INTERMINE 5.0.2+
    • Filters specific to an enrichment widget
  • Display chart and table widgets on results page REQUIRES INTERMINE 5.0.2+
  • Make results page layout more space efficient by moving recent queries panel into a dropdown

1.0.1

  • Fix BlueGenes version number in footer showing as "dev" for a build from the exact commit with annotated tag
  • Support specifying a favicon, either from default mine or by adding one