From cf42dbe8ca9940abab14036dfa5626103764f5b6 Mon Sep 17 00:00:00 2001 From: "Formel, Stephen Killfoile" Date: Fri, 10 Nov 2023 12:15:19 -0600 Subject: [PATCH 1/2] code cleanup of great white R notebook --- .../DRAFT-R-netCDF2DwC.ipynb | 3199 ++++++++--------- .../atn_45866_occurrence.csv | 36 +- 2 files changed, 1461 insertions(+), 1774 deletions(-) diff --git a/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb b/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb index c1527511..61709c7a 100644 --- a/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb +++ b/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb @@ -14,7 +14,8 @@ "\n", "For more information on the tidync package, see this R blog: [https://ropensci.org/blog/2019/11/05/tidync/](https://ropensci.org/blog/2019/11/05/tidync/)\n", "\n", - "**Caution** This notebook uses an example file for testing purposes. The data contained in the file are **not real**, they are within normal bounds to give a perspective of what the observations could look like." + "**Caution** This notebook uses an example file for testing purposes. The data contained in the file are **not real**, they are within normal bounds to give a perspective of what the observations could look lik\n", + "e." ] }, { @@ -26,42 +27,48 @@ "name": "stderr", "output_type": "stream", "text": [ - "The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,\n", - "which was just loaded, will retire in October 2023.\n", - "Please refer to R-spatial evolution reports for details, especially\n", - "https://r-spatial.org/r/2023/05/15/evolution4.html.\n", - "It may be desirable to make the sf package available;\n", - "package maintainers should consider adding sf to Suggests:.\n", - "The sp package is now running under evolution status 2\n", - " (status 2 uses the sf package in place of rgdal)\n", + "rgeos version: 0.6-4, (SVN revision 699)\n", + " GEOS runtime version: 3.12.0-CAPI-1.18.0 \n", + " Please note that rgeos will be retired during October 2023,\n", + "plan transition to sf or terra functions using GEOS at your earliest convenience.\n", + "See https://r-spatial.org/r/2023/05/15/evolution4.html for details.\n", + " GEOS using OverlayNG\n", + " Linking to sp version: 2.0-0 \n", + " Polygon checking: TRUE \n", "\n", - "-- \u001b[1mAttaching packages\u001b[22m ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tidyverse 1.3.2 --\n", - "\u001b[32mv\u001b[39m \u001b[34mggplot2\u001b[39m 3.4.2 \u001b[32mv\u001b[39m \u001b[34mpurrr \u001b[39m 1.0.1\n", - "\u001b[32mv\u001b[39m \u001b[34mtibble \u001b[39m 3.2.1 \u001b[32mv\u001b[39m \u001b[34mdplyr \u001b[39m 1.1.1\n", - "\u001b[32mv\u001b[39m \u001b[34mtidyr \u001b[39m 1.3.0 \u001b[32mv\u001b[39m \u001b[34mstringr\u001b[39m 1.5.0\n", - "\u001b[32mv\u001b[39m \u001b[34mreadr \u001b[39m 2.1.4 \u001b[32mv\u001b[39m \u001b[34mforcats\u001b[39m 1.0.0\n", - "-- \u001b[1mConflicts\u001b[22m -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tidyverse_conflicts() --\n", + "\n", + "-- \u001b[1mAttaching core tidyverse packages\u001b[22m ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tidyverse 2.0.0 --\n", + "\u001b[32mv\u001b[39m \u001b[34mdplyr \u001b[39m 1.1.3 \u001b[32mv\u001b[39m \u001b[34mreadr \u001b[39m 2.1.4\n", + "\u001b[32mv\u001b[39m \u001b[34mforcats \u001b[39m 1.0.0 \u001b[32mv\u001b[39m \u001b[34mstringr \u001b[39m 1.5.0\n", + "\u001b[32mv\u001b[39m \u001b[34mggplot2 \u001b[39m 3.4.2 \u001b[32mv\u001b[39m \u001b[34mtibble \u001b[39m 3.2.1\n", + "\u001b[32mv\u001b[39m \u001b[34mlubridate\u001b[39m 1.9.3 \u001b[32mv\u001b[39m \u001b[34mtidyr \u001b[39m 1.3.0\n", + "\u001b[32mv\u001b[39m \u001b[34mpurrr \u001b[39m 1.0.2 \n", + "-- \u001b[1mConflicts\u001b[22m ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tidyverse_conflicts() --\n", "\u001b[31mx\u001b[39m \u001b[34mdplyr\u001b[39m::\u001b[32mfilter()\u001b[39m masks \u001b[34mstats\u001b[39m::filter()\n", "\u001b[31mx\u001b[39m \u001b[34mdplyr\u001b[39m::\u001b[32mlag()\u001b[39m masks \u001b[34mstats\u001b[39m::lag()\n", + "\u001b[36mi\u001b[39m Use the conflicted package (\u001b[3m\u001b[34m\u001b[39m\u001b[23m) to force all conflicts to become errors\n", "\n", - "Attaching package: 'lubridate'\n", + "Attaching package: 'maps'\n", "\n", "\n", - "The following objects are masked from 'package:base':\n", + "The following object is masked from 'package:purrr':\n", "\n", - " date, intersect, setdiff, union\n", + " map\n", "\n", "\n" ] } ], "source": [ + "#Load libraries\n", + "\n", "library(tidync)\n", "library(obistools)\n", "library(ncdf4)\n", - "library(tidyverse)\n", - "library(stringr)\n", - "library(lubridate)" + "library(tidyverse) #includes stringr\n", + "library(lubridate)\n", + "library(maps)\n", + "library(mapdata)" ] }, { @@ -89,35 +96,26 @@ "[1] stats graphics grDevices utils datasets methods base \n", "\n", "other attached packages:\n", - " [1] lubridate_1.9.2 forcats_1.0.0 stringr_1.5.0 dplyr_1.1.1 \n", - " [5] purrr_1.0.1 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1 \n", - " [9] ggplot2_3.4.2 tidyverse_1.3.2 ncdf4_1.21 obistools_0.0.10\n", - "[13] tidync_0.3.0 \n", + " [1] mapdata_2.3.1 maps_3.4.1.1 lubridate_1.9.3 forcats_1.0.0 \n", + " [5] stringr_1.5.0 dplyr_1.1.3 purrr_1.0.2 readr_2.1.4 \n", + " [9] tidyr_1.3.0 tibble_3.2.1 ggplot2_3.4.2 tidyverse_2.0.0 \n", + "[13] ncdf4_1.21 obistools_0.0.10 tidync_0.3.0 \n", "\n", "loaded via a namespace (and not attached):\n", - " [1] httr_1.4.6 jsonlite_1.8.4 modelr_0.1.11 \n", - " [4] sp_2.0-0 googlesheets4_1.1.0 cellranger_1.1.0 \n", - " [7] pillar_1.9.0 backports_1.4.1 lattice_0.20-45 \n", - "[10] glue_1.6.2 uuid_1.1-0 digest_0.6.31 \n", - "[13] rvest_1.0.3 colorspace_2.1-0 htmltools_0.5.5 \n", - "[16] pkgconfig_2.0.3 broom_1.0.4 haven_2.5.2 \n", - "[19] scales_1.2.1 tzdb_0.3.0 timechange_0.2.0 \n", - "[22] googledrive_2.1.0 generics_0.1.3 withr_2.5.0 \n", - "[25] repr_1.1.6 cli_3.6.0 readxl_1.4.2 \n", - "[28] magrittr_2.0.3 crayon_1.5.2 evaluate_0.20 \n", - "[31] data.tree_1.0.0 fs_1.6.1 fansi_1.0.4 \n", - "[34] xml2_1.3.3 tools_4.1.3 hms_1.1.3 \n", - "[37] geosphere_1.5-18 gargle_1.4.0 lifecycle_1.0.3 \n", - "[40] reprex_2.0.2 munsell_0.5.0 compiler_4.1.3 \n", - "[43] RNetCDF_2.6-2 rlang_1.1.0 grid_4.1.3 \n", - "[46] pbdZMQ_0.3-9 IRkernel_1.3.2 rappdirs_0.3.3 \n", - "[49] htmlwidgets_1.6.2 crosstalk_1.2.0 base64enc_0.1-3 \n", - "[52] rmarkdown_2.20 gtable_0.3.3 DBI_1.1.3 \n", - "[55] R6_2.5.1 ncmeta_0.3.5 knitr_1.42 \n", - "[58] fastmap_1.1.1 rgeos_0.6-2 utf8_1.2.3 \n", - "[61] stringi_1.7.12 IRdisplay_1.1 Rcpp_1.0.10 \n", - "[64] vctrs_0.6.1 leaflet_2.1.2 dbplyr_2.3.2 \n", - "[67] tidyselect_1.2.0 xfun_0.37 " + " [1] Rcpp_1.0.11 lattice_0.22-5 digest_0.6.33 utf8_1.2.4 \n", + " [5] IRdisplay_1.1 R6_2.5.1 repr_1.1.6 evaluate_0.21 \n", + " [9] pillar_1.9.0 rlang_1.1.2 uuid_1.1-1 ncmeta_0.3.5 \n", + "[13] geosphere_1.5-18 rmarkdown_2.22 htmlwidgets_1.6.2 munsell_0.5.0 \n", + "[17] compiler_4.1.3 xfun_0.41 pkgconfig_2.0.3 base64enc_0.1-3 \n", + "[21] rgeos_0.6-4 htmltools_0.5.7 tidyselect_1.2.0 fansi_1.0.5 \n", + "[25] tzdb_0.4.0 crayon_1.5.2 withr_2.5.0 rappdirs_0.3.3 \n", + "[29] grid_4.1.3 jsonlite_1.8.7 gtable_0.3.3 lifecycle_1.0.3 \n", + "[33] magrittr_2.0.3 scales_1.2.1 cli_3.6.1 stringi_1.7.12 \n", + "[37] leaflet_2.1.2 sp_2.1-1 xml2_1.3.3 generics_0.1.3 \n", + "[41] vctrs_0.6.4 IRkernel_1.3.2 data.tree_1.0.0 tools_4.1.3 \n", + "[45] glue_1.6.2 RNetCDF_2.6-2 hms_1.1.3 crosstalk_1.2.0 \n", + "[49] fastmap_1.1.1 timechange_0.2.0 colorspace_2.1-0 pbdZMQ_0.3-10 \n", + "[53] knitr_1.43 " ] }, "metadata": {}, @@ -145,7 +143,8 @@ "source": [ "url = 'https://www.nodc.noaa.gov/archive/arc0217/0282699/1.1/data/0-data/atn_45866_great-white-shark_trajectory_20090923-20091123.nc'\n", "\n", - "fname = str_split_i(url, \"/\", i=-1)\n", + "#fname = str_split_i(url, \"/\", i=-1)\n", + "fname = basename(url)\n", "\n", "download.file(url, fname, mode = \"wb\")" ] @@ -1947,258 +1946,6 @@ "atn_tbl" ] }, - { - "cell_type": "code", - "execution_count": 10, - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "\n", - "\n", - "\n", - "\t\n", - "\t\n", - "\n", - "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\n", - "
A tibble: 29 × 23
timezlatlonpttinstrumenttypelocation_classerror_radiussemi_major_axissemi_minor_axisellipse_orientationoffsetoffset_orientationgpe_msdgpe_ucountqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagcommentobs
<dbl><int><dbl><dbl><int><chr><chr><chr><int><int><int><int><int><int><dbl><dbl><int><int><int><int><int><chr><int>
622512000034.030-118.56045866SPOTUser nanNANANANANANANaNNaNNA1211 1
622708920023.590-166.18045866SPOTArgosA NANANANANANANaNNaNNA1414 2
622724940034.024-118.55645866SPOTArgos1 NANANANANANANaNNaNNA1414 3
622725060034.035-118.54945866SPOTArgos0 NANANANANANANaNNaNNA1414 4
622922280034.033-118.54745866SPOTArgos1 NANANANANANANaNNaNNA1111 5
623134860033.517-119.75045866SPOTArgosB NANANANANANANaNNaNNA1111 6
623881440034.038-118.58145866SPOTArgos2 NANANANANANANaNNaNNA1111 7
624452700033.995-118.67845866SPOTArgos0 NANANANANANANaNNaNNA1111 8
624607860034.037-118.54545866SPOTArgos0 NANANANANANANaNNaNNA1111 9
624618000034.026-118.53445866SPOTArgos2 NANANANANANANaNNaNNA111110
624623880034.027-118.54545866SPOTArgos3 NANANANANANANaNNaNNA111111
624703680034.039-118.54845866SPOTArgos1 NANANANANANANaNNaNNA111112
624709560034.031-118.54145866SPOTArgos2 NANANANANANANaNNaNNA111113
624712500034.041-118.53545866SPOTArgos0 NANANANANANANaNNaNNA111114
624795600034.036-118.55745866SPOTArgosA NANANANANANANaNNaNNA111115
625189920033.999-118.61245866SPOTArgos2 NANANANANANANaNNaNNA111116
625190760034.002-118.60445866SPOTArgos0 NANANANANANANaNNaNNA111117
625402380034.022-118.53745866SPOTArgos3 NANANANANANANaNNaNNA111118
625404120034.021-118.57045866SPOTArgosB NANANANANANANaNNaNNA111119
625508460034.010-118.52445866SPOTArgos1 NANANANANANANaNNaNNA111120
625508520034.006-118.52645866SPOTArgos2 NANANANANANANaNNaNNA131321
625665180033.989-118.50445866SPOTArgos2 NANANANANANANaNNaNNA111122
625744980034.021-118.55745866SPOTArgosA NANANANANANANaNNaNNA111123
625866480034.005-118.59145866SPOTArgosA NANANANANANANaNNaNNA111124
625871700034.045-118.53045866SPOTArgos0 NANANANANANANaNNaNNA111125
625957440034.043-118.54145866SPOTArgosA NANANANANANANaNNaNNA111126
626377980034.021-118.61145866SPOTArgosB NANANANANANANaNNaNNA111127
626986080033.993-118.60245866SPOTArgosA NANANANANANANaNNaNNA111128
627801120033.972-118.53445866SPOTArgosB NANANANANANANaNNaNNA111129
\n" - ], - "text/latex": [ - "A tibble: 29 × 23\n", - "\\begin{tabular}{lllllllllllllllllllllll}\n", - " time & z & lat & lon & ptt & instrument & type & location\\_class & error\\_radius & semi\\_major\\_axis & semi\\_minor\\_axis & ellipse\\_orientation & offset & offset\\_orientation & gpe\\_msd & gpe\\_u & count & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & comment & obs\\\\\n", - " & & & & & & & & & & & & & & & & & & & & & & \\\\\n", - "\\hline\n", - "\t 622512000 & 0 & 34.030 & -118.560 & 45866 & SPOT & User & nan & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 2 & 1 & 1 & & 1\\\\\n", - "\t 622708920 & 0 & 23.590 & -166.180 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 4 & 1 & 4 & & 2\\\\\n", - "\t 622724940 & 0 & 34.024 & -118.556 & 45866 & SPOT & Argos & 1 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 4 & 1 & 4 & & 3\\\\\n", - "\t 622725060 & 0 & 34.035 & -118.549 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 4 & 1 & 4 & & 4\\\\\n", - "\t 622922280 & 0 & 34.033 & -118.547 & 45866 & SPOT & Argos & 1 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 5\\\\\n", - "\t 623134860 & 0 & 33.517 & -119.750 & 45866 & SPOT & Argos & B & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 6\\\\\n", - "\t 623881440 & 0 & 34.038 & -118.581 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 7\\\\\n", - "\t 624452700 & 0 & 33.995 & -118.678 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 8\\\\\n", - "\t 624607860 & 0 & 34.037 & -118.545 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 9\\\\\n", - "\t 624618000 & 0 & 34.026 & -118.534 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 10\\\\\n", - "\t 624623880 & 0 & 34.027 & -118.545 & 45866 & SPOT & Argos & 3 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 11\\\\\n", - "\t 624703680 & 0 & 34.039 & -118.548 & 45866 & SPOT & Argos & 1 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 12\\\\\n", - "\t 624709560 & 0 & 34.031 & -118.541 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 13\\\\\n", - "\t 624712500 & 0 & 34.041 & -118.535 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 14\\\\\n", - "\t 624795600 & 0 & 34.036 & -118.557 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 15\\\\\n", - "\t 625189920 & 0 & 33.999 & -118.612 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 16\\\\\n", - "\t 625190760 & 0 & 34.002 & -118.604 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 17\\\\\n", - "\t 625402380 & 0 & 34.022 & -118.537 & 45866 & SPOT & Argos & 3 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 18\\\\\n", - "\t 625404120 & 0 & 34.021 & -118.570 & 45866 & SPOT & Argos & B & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 19\\\\\n", - "\t 625508460 & 0 & 34.010 & -118.524 & 45866 & SPOT & Argos & 1 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 20\\\\\n", - "\t 625508520 & 0 & 34.006 & -118.526 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 3 & 1 & 3 & & 21\\\\\n", - "\t 625665180 & 0 & 33.989 & -118.504 & 45866 & SPOT & Argos & 2 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 22\\\\\n", - "\t 625744980 & 0 & 34.021 & -118.557 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 23\\\\\n", - "\t 625866480 & 0 & 34.005 & -118.591 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 24\\\\\n", - "\t 625871700 & 0 & 34.045 & -118.530 & 45866 & SPOT & Argos & 0 & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 25\\\\\n", - "\t 625957440 & 0 & 34.043 & -118.541 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 26\\\\\n", - "\t 626377980 & 0 & 34.021 & -118.611 & 45866 & SPOT & Argos & B & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 27\\\\\n", - "\t 626986080 & 0 & 33.993 & -118.602 & 45866 & SPOT & Argos & A & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 28\\\\\n", - "\t 627801120 & 0 & 33.972 & -118.534 & 45866 & SPOT & Argos & B & NA & NA & NA & NA & NA & NA & NaN & NaN & NA & 1 & 1 & 1 & 1 & & 29\\\\\n", - "\\end{tabular}\n" - ], - "text/markdown": [ - "\n", - "A tibble: 29 × 23\n", - "\n", - "| time <dbl> | z <int> | lat <dbl> | lon <dbl> | ptt <int> | instrument <chr> | type <chr> | location_class <chr> | error_radius <int> | semi_major_axis <int> | semi_minor_axis <int> | ellipse_orientation <int> | offset <int> | offset_orientation <int> | gpe_msd <dbl> | gpe_u <dbl> | count <int> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | comment <chr> | obs <int> |\n", - "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| 622512000 | 0 | 34.030 | -118.560 | 45866 | SPOT | User | nan | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 2 | 1 | 1 | | 1 |\n", - "| 622708920 | 0 | 23.590 | -166.180 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 4 | 1 | 4 | | 2 |\n", - "| 622724940 | 0 | 34.024 | -118.556 | 45866 | SPOT | Argos | 1 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 4 | 1 | 4 | | 3 |\n", - "| 622725060 | 0 | 34.035 | -118.549 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 4 | 1 | 4 | | 4 |\n", - "| 622922280 | 0 | 34.033 | -118.547 | 45866 | SPOT | Argos | 1 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 5 |\n", - "| 623134860 | 0 | 33.517 | -119.750 | 45866 | SPOT | Argos | B | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 6 |\n", - "| 623881440 | 0 | 34.038 | -118.581 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 7 |\n", - "| 624452700 | 0 | 33.995 | -118.678 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 8 |\n", - "| 624607860 | 0 | 34.037 | -118.545 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 9 |\n", - "| 624618000 | 0 | 34.026 | -118.534 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 10 |\n", - "| 624623880 | 0 | 34.027 | -118.545 | 45866 | SPOT | Argos | 3 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 11 |\n", - "| 624703680 | 0 | 34.039 | -118.548 | 45866 | SPOT | Argos | 1 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 12 |\n", - "| 624709560 | 0 | 34.031 | -118.541 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 13 |\n", - "| 624712500 | 0 | 34.041 | -118.535 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 14 |\n", - "| 624795600 | 0 | 34.036 | -118.557 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 15 |\n", - "| 625189920 | 0 | 33.999 | -118.612 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 16 |\n", - "| 625190760 | 0 | 34.002 | -118.604 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 17 |\n", - "| 625402380 | 0 | 34.022 | -118.537 | 45866 | SPOT | Argos | 3 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 18 |\n", - "| 625404120 | 0 | 34.021 | -118.570 | 45866 | SPOT | Argos | B | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 19 |\n", - "| 625508460 | 0 | 34.010 | -118.524 | 45866 | SPOT | Argos | 1 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 20 |\n", - "| 625508520 | 0 | 34.006 | -118.526 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 3 | 1 | 3 | | 21 |\n", - "| 625665180 | 0 | 33.989 | -118.504 | 45866 | SPOT | Argos | 2 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 22 |\n", - "| 625744980 | 0 | 34.021 | -118.557 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 23 |\n", - "| 625866480 | 0 | 34.005 | -118.591 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 24 |\n", - "| 625871700 | 0 | 34.045 | -118.530 | 45866 | SPOT | Argos | 0 | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 25 |\n", - "| 625957440 | 0 | 34.043 | -118.541 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 26 |\n", - "| 626377980 | 0 | 34.021 | -118.611 | 45866 | SPOT | Argos | B | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 27 |\n", - "| 626986080 | 0 | 33.993 | -118.602 | 45866 | SPOT | Argos | A | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 28 |\n", - "| 627801120 | 0 | 33.972 | -118.534 | 45866 | SPOT | Argos | B | NA | NA | NA | NA | NA | NA | NaN | NaN | NA | 1 | 1 | 1 | 1 | | 29 |\n", - "\n" - ], - "text/plain": [ - " time z lat lon ptt instrument type location_class\n", - "1 622512000 0 34.030 -118.560 45866 SPOT User nan \n", - "2 622708920 0 23.590 -166.180 45866 SPOT Argos A \n", - "3 622724940 0 34.024 -118.556 45866 SPOT Argos 1 \n", - "4 622725060 0 34.035 -118.549 45866 SPOT Argos 0 \n", - "5 622922280 0 34.033 -118.547 45866 SPOT Argos 1 \n", - "6 623134860 0 33.517 -119.750 45866 SPOT Argos B \n", - "7 623881440 0 34.038 -118.581 45866 SPOT Argos 2 \n", - "8 624452700 0 33.995 -118.678 45866 SPOT Argos 0 \n", - "9 624607860 0 34.037 -118.545 45866 SPOT Argos 0 \n", - "10 624618000 0 34.026 -118.534 45866 SPOT Argos 2 \n", - "11 624623880 0 34.027 -118.545 45866 SPOT Argos 3 \n", - "12 624703680 0 34.039 -118.548 45866 SPOT Argos 1 \n", - "13 624709560 0 34.031 -118.541 45866 SPOT Argos 2 \n", - "14 624712500 0 34.041 -118.535 45866 SPOT Argos 0 \n", - "15 624795600 0 34.036 -118.557 45866 SPOT Argos A \n", - "16 625189920 0 33.999 -118.612 45866 SPOT Argos 2 \n", - "17 625190760 0 34.002 -118.604 45866 SPOT Argos 0 \n", - "18 625402380 0 34.022 -118.537 45866 SPOT Argos 3 \n", - "19 625404120 0 34.021 -118.570 45866 SPOT Argos B \n", - "20 625508460 0 34.010 -118.524 45866 SPOT Argos 1 \n", - "21 625508520 0 34.006 -118.526 45866 SPOT Argos 2 \n", - "22 625665180 0 33.989 -118.504 45866 SPOT Argos 2 \n", - "23 625744980 0 34.021 -118.557 45866 SPOT Argos A \n", - "24 625866480 0 34.005 -118.591 45866 SPOT Argos A \n", - "25 625871700 0 34.045 -118.530 45866 SPOT Argos 0 \n", - "26 625957440 0 34.043 -118.541 45866 SPOT Argos A \n", - "27 626377980 0 34.021 -118.611 45866 SPOT Argos B \n", - "28 626986080 0 33.993 -118.602 45866 SPOT Argos A \n", - "29 627801120 0 33.972 -118.534 45866 SPOT Argos B \n", - " error_radius semi_major_axis semi_minor_axis ellipse_orientation offset\n", - "1 NA NA NA NA NA \n", - "2 NA NA NA NA NA \n", - "3 NA NA NA NA NA \n", - "4 NA NA NA NA NA \n", - "5 NA NA NA NA NA \n", - "6 NA NA NA NA NA \n", - "7 NA NA NA NA NA \n", - "8 NA NA NA NA NA \n", - "9 NA NA NA NA NA \n", - "10 NA NA NA NA NA \n", - "11 NA NA NA NA NA \n", - "12 NA NA NA NA NA \n", - "13 NA NA NA NA NA \n", - "14 NA NA NA NA NA \n", - "15 NA NA NA NA NA \n", - "16 NA NA NA NA NA \n", - "17 NA NA NA NA NA \n", - "18 NA NA NA NA NA \n", - "19 NA NA NA NA NA \n", - "20 NA NA NA NA NA \n", - "21 NA NA NA NA NA \n", - "22 NA NA NA NA NA \n", - "23 NA NA NA NA NA \n", - "24 NA NA NA NA NA \n", - "25 NA NA NA NA NA \n", - "26 NA NA NA NA NA \n", - "27 NA NA NA NA NA \n", - "28 NA NA NA NA NA \n", - "29 NA NA NA NA NA \n", - " offset_orientation gpe_msd gpe_u count qartod_time_flag qartod_speed_flag\n", - "1 NA NaN NaN NA 1 2 \n", - "2 NA NaN NaN NA 1 4 \n", - "3 NA NaN NaN NA 1 4 \n", - "4 NA NaN NaN NA 1 4 \n", - "5 NA NaN NaN NA 1 1 \n", - "6 NA NaN NaN NA 1 1 \n", - "7 NA NaN NaN NA 1 1 \n", - "8 NA NaN NaN NA 1 1 \n", - "9 NA NaN NaN NA 1 1 \n", - "10 NA NaN NaN NA 1 1 \n", - "11 NA NaN NaN NA 1 1 \n", - "12 NA NaN NaN NA 1 1 \n", - "13 NA NaN NaN NA 1 1 \n", - "14 NA NaN NaN NA 1 1 \n", - "15 NA NaN NaN NA 1 1 \n", - "16 NA NaN NaN NA 1 1 \n", - "17 NA NaN NaN NA 1 1 \n", - "18 NA NaN NaN NA 1 1 \n", - "19 NA NaN NaN NA 1 1 \n", - "20 NA NaN NaN NA 1 1 \n", - "21 NA NaN NaN NA 1 3 \n", - "22 NA NaN NaN NA 1 1 \n", - "23 NA NaN NaN NA 1 1 \n", - "24 NA NaN NaN NA 1 1 \n", - "25 NA NaN NaN NA 1 1 \n", - "26 NA NaN NaN NA 1 1 \n", - "27 NA NaN NaN NA 1 1 \n", - "28 NA NaN NaN NA 1 1 \n", - "29 NA NaN NaN NA 1 1 \n", - " qartod_location_flag qartod_rollup_flag comment obs\n", - "1 1 1 1 \n", - "2 1 4 2 \n", - "3 1 4 3 \n", - "4 1 4 4 \n", - "5 1 1 5 \n", - "6 1 1 6 \n", - "7 1 1 7 \n", - "8 1 1 8 \n", - "9 1 1 9 \n", - "10 1 1 10 \n", - "11 1 1 11 \n", - "12 1 1 12 \n", - "13 1 1 13 \n", - "14 1 1 14 \n", - "15 1 1 15 \n", - "16 1 1 16 \n", - "17 1 1 17 \n", - "18 1 1 18 \n", - "19 1 1 19 \n", - "20 1 1 20 \n", - "21 1 3 21 \n", - "22 1 1 22 \n", - "23 1 1 23 \n", - "24 1 1 24 \n", - "25 1 1 25 \n", - "26 1 1 26 \n", - "27 1 1 27 \n", - "28 1 1 28 \n", - "29 1 1 29 " - ] - }, - "metadata": {}, - "output_type": "display_data" - } - ], - "source": [ - "atn_tbl" - ] - }, { "cell_type": "markdown", "metadata": {}, @@ -2212,7 +1959,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": 10, "metadata": {}, "outputs": [ { @@ -2332,7 +2079,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": 11, "metadata": {}, "outputs": [ { @@ -2579,7 +2326,7 @@ } ], "source": [ - "library(stringr)\n", + "#library(stringr) - loaded with tidyverse\n", "# grab origin date from time variable units attribute\n", "tunit <- time_attrs %>% dplyr::filter(name == \"units\")\n", "lunit <- str_split(tunit$value,' ')[[1]]\n", @@ -2599,7 +2346,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": 12, "metadata": {}, "outputs": [ { @@ -2619,7 +2366,7 @@ } ], "source": [ - "library(ggplot2)\n", + "#library(ggplot2) - loaded with tidyverse\n", "\n", "options(repr.plot.width = 14, repr.plot.height = 14)\n", "\n", @@ -2641,24 +2388,9 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": 13, "metadata": {}, "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "\n", - "Attaching package: 'maps'\n", - "\n", - "\n", - "The following object is masked from 'package:purrr':\n", - "\n", - " map\n", - "\n", - "\n" - ] - }, { "data": { "image/png": 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4eideCTIzhylXfnSS9n/BC9DvzE7vdOVavk0DUCQjv7vrL5Efrv5Yenb9tPQX62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\nLycO0l8xpn3WovVH+3S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@@ -2676,8 +2408,8 @@ } ], "source": [ - "library('maps')\n", - "library('mapdata')\n", + "# library('maps') - moved to top so it's clear they should be installed from the beginning\n", + "# library('mapdata')\n", "\n", "# collect title from global attributes\n", "title <- metadata %>% dplyr::filter(variable == \"NC_GLOBAL\") %>% dplyr::filter(name == \"title\")\n", @@ -2697,7 +2429,8 @@ "z + geom_polygon(data = w, aes(x = long, y = lat, group = group), fill = 'grey80') + \n", " theme_bw() +\n", " coord_fixed(1.3, xlim = xlim, ylim = ylim) + \n", - " ggtitle( paste( strwrap(title$value, width = 150), collapse = \"\\n\") )" + " #ggtitle( paste( strwrap(title$value, width = 150), collapse = \"\\n\") ) - labs is a more mature and flexible function\n", + " labs(title = paste( strwrap(title$value, width = 150), collapse = \"\\n\"))" ] }, { @@ -2734,7 +2467,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": 14, "metadata": {}, "outputs": [], "source": [ @@ -2751,7 +2484,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": 15, "metadata": {}, "outputs": [], "source": [ @@ -2828,7 +2561,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": 16, "metadata": {}, "outputs": [], "source": [ @@ -2874,7 +2607,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": 17, "metadata": {}, "outputs": [ { @@ -3377,7 +3110,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": 18, "metadata": {}, "outputs": [ { @@ -3636,354 +3369,306 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": 33, "metadata": {}, "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "Warning message:\n", - "\"\u001b[1m\u001b[22mThere was 1 warning in `mutate()`.\n", - "\u001b[1m\u001b[22m\u001b[36mi\u001b[39m In argument: `across(\"basisOfRecord\", str_replace, \"User\", \"HumanObservation\")`.\n", - "Caused by warning:\n", - "\u001b[1m\u001b[22m\u001b[33m!\u001b[39m The `...` argument of `across()` is deprecated as of dplyr 1.1.0.\n", - "Supply arguments directly to `.fns` through an anonymous function instead.\n", - "\n", - " # Previously\n", - " across(a:b, mean, na.rm = TRUE)\n", - "\n", - " # Now\n", - " across(a:b, \\(x) mean(x, na.rm = TRUE))\"\n" - ] - }, { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", "\n", "
A data.frame: 29 × 20A tibble: 29 × 20
atn_tbl.location_classatn_tbl.qartod_time_flagatn_tbl.qartod_speed_flagatn_tbl.qartod_location_flagatn_tbl.qartod_rollup_flagbasisOfRecordorganismIDeventDateoccurrenceIDdecimalLatitudedecimalLongitudegeodeticDatumeventIDkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameID
<chr><int><int><int><int><chr><chr><chr><chr><dbl><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr>
eventDatedecimalLatitudedecimalLongitudebasisOfRecordlocation_classqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDorganismIDoccurrenceIDgeodeticDatumeventID
<chr><dbl><dbl><chr><chr><int><int><int><int><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
nan1211HumanObservation 105838_great_white_shark2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark34.030-118.560EPSG:4326great_white shark_2009-09-23T00:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1414MachineObservation105838_great_white_shark2009-09-25T06:42:00Z2009-09-25T06:42:00Z_0_great_white_shark23.590-166.180EPSG:4326great_white shark_2009-09-25T06:42:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
1 1414MachineObservation105838_great_white_shark2009-09-25T11:09:00Z2009-09-25T11:09:00Z_0_great_white_shark34.024-118.556EPSG:4326great_white shark_2009-09-25T11:09:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1414MachineObservation105838_great_white_shark2009-09-25T11:11:00Z2009-09-25T11:11:00Z_0_great_white_shark34.035-118.549EPSG:4326great_white shark_2009-09-25T11:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
1 1111MachineObservation105838_great_white_shark2009-09-27T17:58:00Z2009-09-27T17:58:00Z_0_great_white_shark34.033-118.547EPSG:4326great_white shark_2009-09-27T17:58:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
B 1111MachineObservation105838_great_white_shark2009-09-30T05:01:00Z2009-09-30T05:01:00Z_0_great_white_shark33.517-119.750EPSG:4326great_white shark_2009-09-30T05:01:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1111MachineObservation105838_great_white_shark2009-10-08T20:24:00Z2009-10-08T20:24:00Z_0_great_white_shark34.038-118.581EPSG:4326great_white shark_2009-10-08T20:24:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1111MachineObservation105838_great_white_shark2009-10-15T11:05:00Z2009-10-15T11:05:00Z_0_great_white_shark33.995-118.678EPSG:4326great_white shark_2009-10-15T11:05:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1111MachineObservation105838_great_white_shark2009-10-17T06:11:00Z2009-10-17T06:11:00Z_0_great_white_shark34.037-118.545EPSG:4326great_white shark_2009-10-17T06:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1111MachineObservation105838_great_white_shark2009-10-17T09:00:00Z2009-10-17T09:00:00Z_0_great_white_shark34.026-118.534EPSG:4326great_white shark_2009-10-17T09:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
3 1111MachineObservation105838_great_white_shark2009-10-17T10:38:00Z2009-10-17T10:38:00Z_0_great_white_shark34.027-118.545EPSG:4326great_white shark_2009-10-17T10:38:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
1 1111MachineObservation105838_great_white_shark2009-10-18T08:48:00Z2009-10-18T08:48:00Z_0_great_white_shark34.039-118.548EPSG:4326great_white shark_2009-10-18T08:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1111MachineObservation105838_great_white_shark2009-10-18T10:26:00Z2009-10-18T10:26:00Z_0_great_white_shark34.031-118.541EPSG:4326great_white shark_2009-10-18T10:26:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1111MachineObservation105838_great_white_shark2009-10-18T11:15:00Z2009-10-18T11:15:00Z_0_great_white_shark34.041-118.535EPSG:4326great_white shark_2009-10-18T11:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1111MachineObservation105838_great_white_shark2009-10-19T10:20:00Z2009-10-19T10:20:00Z_0_great_white_shark34.036-118.557EPSG:4326great_white shark_2009-10-19T10:20:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1111MachineObservation105838_great_white_shark2009-10-23T23:52:00Z2009-10-23T23:52:00Z_0_great_white_shark33.999-118.612EPSG:4326great_white shark_2009-10-23T23:52:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1111MachineObservation105838_great_white_shark2009-10-24T00:06:00Z2009-10-24T00:06:00Z_0_great_white_shark34.002-118.604EPSG:4326great_white shark_2009-10-24T00:06:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
3 1111MachineObservation105838_great_white_shark2009-10-26T10:53:00Z2009-10-26T10:53:00Z_0_great_white_shark34.022-118.537EPSG:4326great_white shark_2009-10-26T10:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
B 1111MachineObservation105838_great_white_shark2009-10-26T11:22:00Z2009-10-26T11:22:00Z_0_great_white_shark34.021-118.570EPSG:4326great_white shark_2009-10-26T11:22:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
1 1111MachineObservation105838_great_white_shark2009-10-27T16:21:00Z2009-10-27T16:21:00Z_0_great_white_shark34.010-118.524EPSG:4326great_white shark_2009-10-27T16:21:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1313MachineObservation105838_great_white_shark2009-10-27T16:22:00Z2009-10-27T16:22:00Z_0_great_white_shark34.006-118.526EPSG:4326great_white shark_2009-10-27T16:22:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2 1111MachineObservation105838_great_white_shark2009-10-29T11:53:00Z2009-10-29T11:53:00Z_0_great_white_shark33.989-118.504EPSG:4326great_white shark_2009-10-29T11:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1111MachineObservation105838_great_white_shark2009-10-30T10:03:00Z2009-10-30T10:03:00Z_0_great_white_shark34.021-118.557EPSG:4326great_white shark_2009-10-30T10:03:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1111MachineObservation105838_great_white_shark2009-10-31T19:48:00Z2009-10-31T19:48:00Z_0_great_white_shark34.005-118.591EPSG:4326great_white shark_2009-10-31T19:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
0 1111MachineObservation105838_great_white_shark2009-10-31T21:15:00Z2009-10-31T21:15:00Z_0_great_white_shark34.045-118.530EPSG:4326great_white shark_2009-10-31T21:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1111MachineObservation105838_great_white_shark2009-11-01T21:04:00Z2009-11-01T21:04:00Z_0_great_white_shark34.043-118.541EPSG:4326great_white shark_2009-11-01T21:04:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
B 1111MachineObservation105838_great_white_shark2009-11-06T17:53:00Z2009-11-06T17:53:00Z_0_great_white_shark34.021-118.611EPSG:4326great_white shark_2009-11-06T17:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
A 1111MachineObservation105838_great_white_shark2009-11-13T18:48:00Z2009-11-13T18:48:00Z_0_great_white_shark33.993-118.602EPSG:4326great_white shark_2009-11-13T18:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
B 1111MachineObservation105838_great_white_shark2009-11-23T05:12:00Z2009-11-23T05:12:00Z_0_great_white_shark33.972-118.534EPSG:4326great_white shark_2009-11-23T05:12:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838
2009-09-23T00:00:00Z34.030-118.560HumanObservation nan1211AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-23T00:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-23T00:00:00Z
2009-09-25T06:42:00Z23.590-166.180MachineObservationA 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T06:42:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T06:42:00Z
2009-09-25T11:09:00Z34.024-118.556MachineObservation1 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:09:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:09:00Z
2009-09-25T11:11:00Z34.035-118.549MachineObservation0 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:11:00Z
2009-09-27T17:58:00Z34.033-118.547MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-27T17:58:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-27T17:58:00Z
2009-09-30T05:01:00Z33.517-119.750MachineObservationB 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-30T05:01:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-30T05:01:00Z
2009-10-08T20:24:00Z34.038-118.581MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-08T20:24:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-08T20:24:00Z
2009-10-15T11:05:00Z33.995-118.678MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-15T11:05:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-15T11:05:00Z
2009-10-17T06:11:00Z34.037-118.545MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T06:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T06:11:00Z
2009-10-17T09:00:00Z34.026-118.534MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T09:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T09:00:00Z
2009-10-17T10:38:00Z34.027-118.545MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T10:38:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T10:38:00Z
2009-10-18T08:48:00Z34.039-118.548MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T08:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T08:48:00Z
2009-10-18T10:26:00Z34.031-118.541MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T10:26:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T10:26:00Z
2009-10-18T11:15:00Z34.041-118.535MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T11:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T11:15:00Z
2009-10-19T10:20:00Z34.036-118.557MachineObservationA 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-19T10:20:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-19T10:20:00Z
2009-10-23T23:52:00Z33.999-118.612MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-23T23:52:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-23T23:52:00Z
2009-10-24T00:06:00Z34.002-118.604MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-24T00:06:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-24T00:06:00Z
2009-10-26T10:53:00Z34.022-118.537MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T10:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T10:53:00Z
2009-10-26T11:22:00Z34.021-118.570MachineObservationB 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T11:22:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T11:22:00Z
2009-10-27T16:21:00Z34.010-118.524MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:21:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:21:00Z
2009-10-27T16:22:00Z34.006-118.526MachineObservation2 1313AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:22:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:22:00Z
2009-10-29T11:53:00Z33.989-118.504MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-29T11:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-29T11:53:00Z
2009-10-30T10:03:00Z34.021-118.557MachineObservationA 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-30T10:03:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-30T10:03:00Z
2009-10-31T19:48:00Z34.005-118.591MachineObservationA 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T19:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T19:48:00Z
2009-10-31T21:15:00Z34.045-118.530MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T21:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T21:15:00Z
2009-11-01T21:04:00Z34.043-118.541MachineObservationA 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-11-01T21:04:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-11-01T21:04:00Z
2009-11-06T17:53:00Z34.021-118.611MachineObservationB 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-11-06T17:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-11-06T17:53:00Z
2009-11-13T18:48:00Z33.993-118.602MachineObservationA 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-11-13T18:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-11-13T18:48:00Z
2009-11-23T05:12:00Z33.972-118.534MachineObservationB 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-11-23T05:12:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-11-23T05:12:00Z
\n" ], "text/latex": [ - "A data.frame: 29 × 20\n", + "A tibble: 29 × 20\n", "\\begin{tabular}{llllllllllllllllllll}\n", - " atn\\_tbl.location\\_class & atn\\_tbl.qartod\\_time\\_flag & atn\\_tbl.qartod\\_speed\\_flag & atn\\_tbl.qartod\\_location\\_flag & atn\\_tbl.qartod\\_rollup\\_flag & basisOfRecord & organismID & eventDate & occurrenceID & decimalLatitude & decimalLongitude & geodeticDatum & eventID & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID\\\\\n", - " & & & & & & & & & & & & & & & & & & & \\\\\n", + " eventDate & decimalLatitude & decimalLongitude & basisOfRecord & location\\_class & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & organismID & occurrenceID & geodeticDatum & eventID\\\\\n", + " & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", - "\t nan & 1 & 2 & 1 & 1 & HumanObservation & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 34.030 & -118.560 & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T06:42:00Z & 2009-09-25T06:42:00Z\\_0\\_great\\_white\\_shark & 23.590 & -166.180 & EPSG:4326 & great\\_white shark\\_2009-09-25T06:42:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 1 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & 34.024 & -118.556 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & 34.035 & -118.549 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & 34.033 & -118.547 & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t B & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-30T05:01:00Z & 2009-09-30T05:01:00Z\\_0\\_great\\_white\\_shark & 33.517 & -119.750 & EPSG:4326 & great\\_white shark\\_2009-09-30T05:01:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & 34.038 & -118.581 & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & 33.995 & -118.678 & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & 34.037 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & 34.026 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & 34.027 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & 34.039 & -118.548 & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & 34.031 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & 34.041 & -118.535 & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-19T10:20:00Z & 2009-10-19T10:20:00Z\\_0\\_great\\_white\\_shark & 34.036 & -118.557 & EPSG:4326 & great\\_white shark\\_2009-10-19T10:20:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & 33.999 & -118.612 & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & 34.002 & -118.604 & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & 34.022 & -118.537 & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t B & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T11:22:00Z & 2009-10-26T11:22:00Z\\_0\\_great\\_white\\_shark & 34.021 & -118.570 & EPSG:4326 & great\\_white shark\\_2009-10-26T11:22:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & 34.010 & -118.524 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 3 & 1 & 3 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & 34.006 & -118.526 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & 33.989 & -118.504 & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-30T10:03:00Z & 2009-10-30T10:03:00Z\\_0\\_great\\_white\\_shark & 34.021 & -118.557 & EPSG:4326 & great\\_white shark\\_2009-10-30T10:03:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T19:48:00Z & 2009-10-31T19:48:00Z\\_0\\_great\\_white\\_shark & 34.005 & -118.591 & EPSG:4326 & great\\_white shark\\_2009-10-31T19:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & 34.045 & -118.530 & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-11-01T21:04:00Z & 2009-11-01T21:04:00Z\\_0\\_great\\_white\\_shark & 34.043 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-11-01T21:04:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t B & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-11-06T17:53:00Z & 2009-11-06T17:53:00Z\\_0\\_great\\_white\\_shark & 34.021 & -118.611 & EPSG:4326 & great\\_white shark\\_2009-11-06T17:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t A & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-11-13T18:48:00Z & 2009-11-13T18:48:00Z\\_0\\_great\\_white\\_shark & 33.993 & -118.602 & EPSG:4326 & great\\_white shark\\_2009-11-13T18:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", - "\t B & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-11-23T05:12:00Z & 2009-11-23T05:12:00Z\\_0\\_great\\_white\\_shark & 33.972 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-11-23T05:12:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838\\\\\n", + "\t 2009-09-23T00:00:00Z & 34.030 & -118.560 & HumanObservation & nan & 1 & 2 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z\\\\\n", + "\t 2009-09-25T06:42:00Z & 23.590 & -166.180 & MachineObservation & A & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T06:42:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T06:42:00Z\\\\\n", + "\t 2009-09-25T11:09:00Z & 34.024 & -118.556 & MachineObservation & 1 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z\\\\\n", + "\t 2009-09-25T11:11:00Z & 34.035 & -118.549 & MachineObservation & 0 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z\\\\\n", + "\t 2009-09-27T17:58:00Z & 34.033 & -118.547 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z\\\\\n", + "\t 2009-09-30T05:01:00Z & 33.517 & -119.750 & MachineObservation & B & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-30T05:01:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-30T05:01:00Z\\\\\n", + "\t 2009-10-08T20:24:00Z & 34.038 & -118.581 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z\\\\\n", + "\t 2009-10-15T11:05:00Z & 33.995 & -118.678 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z\\\\\n", + "\t 2009-10-17T06:11:00Z & 34.037 & -118.545 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z\\\\\n", + "\t 2009-10-17T09:00:00Z & 34.026 & -118.534 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z\\\\\n", + "\t 2009-10-17T10:38:00Z & 34.027 & -118.545 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z\\\\\n", + "\t 2009-10-18T08:48:00Z & 34.039 & -118.548 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z\\\\\n", + "\t 2009-10-18T10:26:00Z & 34.031 & -118.541 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z\\\\\n", + "\t 2009-10-18T11:15:00Z & 34.041 & -118.535 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z\\\\\n", + "\t 2009-10-19T10:20:00Z & 34.036 & -118.557 & MachineObservation & A & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-19T10:20:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-19T10:20:00Z\\\\\n", + "\t 2009-10-23T23:52:00Z & 33.999 & -118.612 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z\\\\\n", + "\t 2009-10-24T00:06:00Z & 34.002 & -118.604 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z\\\\\n", + "\t 2009-10-26T10:53:00Z & 34.022 & -118.537 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z\\\\\n", + "\t 2009-10-26T11:22:00Z & 34.021 & -118.570 & MachineObservation & B & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T11:22:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T11:22:00Z\\\\\n", + "\t 2009-10-27T16:21:00Z & 34.010 & -118.524 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z\\\\\n", + "\t 2009-10-27T16:22:00Z & 34.006 & -118.526 & MachineObservation & 2 & 1 & 3 & 1 & 3 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z\\\\\n", + "\t 2009-10-29T11:53:00Z & 33.989 & -118.504 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z\\\\\n", + "\t 2009-10-30T10:03:00Z & 34.021 & -118.557 & MachineObservation & A & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-30T10:03:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-30T10:03:00Z\\\\\n", + "\t 2009-10-31T19:48:00Z & 34.005 & -118.591 & MachineObservation & A & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T19:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T19:48:00Z\\\\\n", + "\t 2009-10-31T21:15:00Z & 34.045 & -118.530 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z\\\\\n", + "\t 2009-11-01T21:04:00Z & 34.043 & -118.541 & MachineObservation & A & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-11-01T21:04:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-11-01T21:04:00Z\\\\\n", + "\t 2009-11-06T17:53:00Z & 34.021 & -118.611 & MachineObservation & B & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-11-06T17:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-11-06T17:53:00Z\\\\\n", + "\t 2009-11-13T18:48:00Z & 33.993 & -118.602 & MachineObservation & A & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-11-13T18:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-11-13T18:48:00Z\\\\\n", + "\t 2009-11-23T05:12:00Z & 33.972 & -118.534 & MachineObservation & B & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-11-23T05:12:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-11-23T05:12:00Z\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A data.frame: 29 × 20\n", + "A tibble: 29 × 20\n", "\n", - "| atn_tbl.location_class <chr> | atn_tbl.qartod_time_flag <int> | atn_tbl.qartod_speed_flag <int> | atn_tbl.qartod_location_flag <int> | atn_tbl.qartod_rollup_flag <int> | basisOfRecord <chr> | organismID <chr> | eventDate <chr> | occurrenceID <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | geodeticDatum <chr> | eventID <chr> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> |\n", + "| eventDate <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | basisOfRecord <chr> | location_class <chr> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | organismID <chr> | occurrenceID <chr> | geodeticDatum <chr> | eventID <chr> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| nan | 1 | 2 | 1 | 1 | HumanObservation | 105838_great_white_shark | 2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 34.030 | -118.560 | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T06:42:00Z | 2009-09-25T06:42:00Z_0_great_white_shark | 23.590 | -166.180 | EPSG:4326 | great_white shark_2009-09-25T06:42:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 1 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:09:00Z | 2009-09-25T11:09:00Z_0_great_white_shark | 34.024 | -118.556 | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:11:00Z | 2009-09-25T11:11:00Z_0_great_white_shark | 34.035 | -118.549 | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-27T17:58:00Z | 2009-09-27T17:58:00Z_0_great_white_shark | 34.033 | -118.547 | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| B | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-30T05:01:00Z | 2009-09-30T05:01:00Z_0_great_white_shark | 33.517 | -119.750 | EPSG:4326 | great_white shark_2009-09-30T05:01:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-08T20:24:00Z | 2009-10-08T20:24:00Z_0_great_white_shark | 34.038 | -118.581 | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-15T11:05:00Z | 2009-10-15T11:05:00Z_0_great_white_shark | 33.995 | -118.678 | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T06:11:00Z | 2009-10-17T06:11:00Z_0_great_white_shark | 34.037 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T09:00:00Z | 2009-10-17T09:00:00Z_0_great_white_shark | 34.026 | -118.534 | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T10:38:00Z | 2009-10-17T10:38:00Z_0_great_white_shark | 34.027 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T08:48:00Z | 2009-10-18T08:48:00Z_0_great_white_shark | 34.039 | -118.548 | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T10:26:00Z | 2009-10-18T10:26:00Z_0_great_white_shark | 34.031 | -118.541 | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T11:15:00Z | 2009-10-18T11:15:00Z_0_great_white_shark | 34.041 | -118.535 | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-19T10:20:00Z | 2009-10-19T10:20:00Z_0_great_white_shark | 34.036 | -118.557 | EPSG:4326 | great_white shark_2009-10-19T10:20:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-23T23:52:00Z | 2009-10-23T23:52:00Z_0_great_white_shark | 33.999 | -118.612 | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-24T00:06:00Z | 2009-10-24T00:06:00Z_0_great_white_shark | 34.002 | -118.604 | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T10:53:00Z | 2009-10-26T10:53:00Z_0_great_white_shark | 34.022 | -118.537 | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| B | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T11:22:00Z | 2009-10-26T11:22:00Z_0_great_white_shark | 34.021 | -118.570 | EPSG:4326 | great_white shark_2009-10-26T11:22:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:21:00Z | 2009-10-27T16:21:00Z_0_great_white_shark | 34.010 | -118.524 | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 3 | 1 | 3 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:22:00Z | 2009-10-27T16:22:00Z_0_great_white_shark | 34.006 | -118.526 | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-29T11:53:00Z | 2009-10-29T11:53:00Z_0_great_white_shark | 33.989 | -118.504 | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-30T10:03:00Z | 2009-10-30T10:03:00Z_0_great_white_shark | 34.021 | -118.557 | EPSG:4326 | great_white shark_2009-10-30T10:03:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T19:48:00Z | 2009-10-31T19:48:00Z_0_great_white_shark | 34.005 | -118.591 | EPSG:4326 | great_white shark_2009-10-31T19:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T21:15:00Z | 2009-10-31T21:15:00Z_0_great_white_shark | 34.045 | -118.530 | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-11-01T21:04:00Z | 2009-11-01T21:04:00Z_0_great_white_shark | 34.043 | -118.541 | EPSG:4326 | great_white shark_2009-11-01T21:04:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| B | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-11-06T17:53:00Z | 2009-11-06T17:53:00Z_0_great_white_shark | 34.021 | -118.611 | EPSG:4326 | great_white shark_2009-11-06T17:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| A | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-11-13T18:48:00Z | 2009-11-13T18:48:00Z_0_great_white_shark | 33.993 | -118.602 | EPSG:4326 | great_white shark_2009-11-13T18:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", - "| B | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-11-23T05:12:00Z | 2009-11-23T05:12:00Z_0_great_white_shark | 33.972 | -118.534 | EPSG:4326 | great_white shark_2009-11-23T05:12:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 |\n", + "| 2009-09-23T00:00:00Z | 34.030 | -118.560 | HumanObservation | nan | 1 | 2 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-23T00:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z |\n", + "| 2009-09-25T06:42:00Z | 23.590 | -166.180 | MachineObservation | A | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T06:42:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T06:42:00Z |\n", + "| 2009-09-25T11:09:00Z | 34.024 | -118.556 | MachineObservation | 1 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:09:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z |\n", + "| 2009-09-25T11:11:00Z | 34.035 | -118.549 | MachineObservation | 0 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z |\n", + "| 2009-09-27T17:58:00Z | 34.033 | -118.547 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-27T17:58:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z |\n", + "| 2009-09-30T05:01:00Z | 33.517 | -119.750 | MachineObservation | B | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-30T05:01:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-30T05:01:00Z |\n", + "| 2009-10-08T20:24:00Z | 34.038 | -118.581 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-08T20:24:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z |\n", + "| 2009-10-15T11:05:00Z | 33.995 | -118.678 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-15T11:05:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z |\n", + "| 2009-10-17T06:11:00Z | 34.037 | -118.545 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T06:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z |\n", + "| 2009-10-17T09:00:00Z | 34.026 | -118.534 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T09:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z |\n", + "| 2009-10-17T10:38:00Z | 34.027 | -118.545 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T10:38:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z |\n", + "| 2009-10-18T08:48:00Z | 34.039 | -118.548 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T08:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z |\n", + "| 2009-10-18T10:26:00Z | 34.031 | -118.541 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T10:26:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z |\n", + "| 2009-10-18T11:15:00Z | 34.041 | -118.535 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T11:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z |\n", + "| 2009-10-19T10:20:00Z | 34.036 | -118.557 | MachineObservation | A | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-19T10:20:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-19T10:20:00Z |\n", + "| 2009-10-23T23:52:00Z | 33.999 | -118.612 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-23T23:52:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z |\n", + "| 2009-10-24T00:06:00Z | 34.002 | -118.604 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-24T00:06:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z |\n", + "| 2009-10-26T10:53:00Z | 34.022 | -118.537 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T10:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z |\n", + "| 2009-10-26T11:22:00Z | 34.021 | -118.570 | MachineObservation | B | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T11:22:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T11:22:00Z |\n", + "| 2009-10-27T16:21:00Z | 34.010 | -118.524 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:21:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z |\n", + "| 2009-10-27T16:22:00Z | 34.006 | -118.526 | MachineObservation | 2 | 1 | 3 | 1 | 3 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:22:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z |\n", + "| 2009-10-29T11:53:00Z | 33.989 | -118.504 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-29T11:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z |\n", + "| 2009-10-30T10:03:00Z | 34.021 | -118.557 | MachineObservation | A | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-30T10:03:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-30T10:03:00Z |\n", + "| 2009-10-31T19:48:00Z | 34.005 | -118.591 | MachineObservation | A | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T19:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T19:48:00Z |\n", + "| 2009-10-31T21:15:00Z | 34.045 | -118.530 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T21:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z |\n", + "| 2009-11-01T21:04:00Z | 34.043 | -118.541 | MachineObservation | A | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-11-01T21:04:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-11-01T21:04:00Z |\n", + "| 2009-11-06T17:53:00Z | 34.021 | -118.611 | MachineObservation | B | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-11-06T17:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-11-06T17:53:00Z |\n", + "| 2009-11-13T18:48:00Z | 33.993 | -118.602 | MachineObservation | A | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-11-13T18:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-11-13T18:48:00Z |\n", + "| 2009-11-23T05:12:00Z | 33.972 | -118.534 | MachineObservation | B | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-11-23T05:12:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-11-23T05:12:00Z |\n", "\n" ], "text/plain": [ - " atn_tbl.location_class atn_tbl.qartod_time_flag atn_tbl.qartod_speed_flag\n", - "1 nan 1 2 \n", - "2 A 1 4 \n", - "3 1 1 4 \n", - "4 0 1 4 \n", - "5 1 1 1 \n", - "6 B 1 1 \n", - "7 2 1 1 \n", - "8 0 1 1 \n", - "9 0 1 1 \n", - "10 2 1 1 \n", - "11 3 1 1 \n", - "12 1 1 1 \n", - "13 2 1 1 \n", - "14 0 1 1 \n", - "15 A 1 1 \n", - "16 2 1 1 \n", - "17 0 1 1 \n", - "18 3 1 1 \n", - "19 B 1 1 \n", - "20 1 1 1 \n", - "21 2 1 3 \n", - "22 2 1 1 \n", - "23 A 1 1 \n", - "24 A 1 1 \n", - "25 0 1 1 \n", - "26 A 1 1 \n", - "27 B 1 1 \n", - "28 A 1 1 \n", - "29 B 1 1 \n", - " atn_tbl.qartod_location_flag atn_tbl.qartod_rollup_flag basisOfRecord \n", - "1 1 1 HumanObservation \n", - "2 1 4 MachineObservation\n", - "3 1 4 MachineObservation\n", - "4 1 4 MachineObservation\n", - "5 1 1 MachineObservation\n", - "6 1 1 MachineObservation\n", - "7 1 1 MachineObservation\n", - "8 1 1 MachineObservation\n", - "9 1 1 MachineObservation\n", - "10 1 1 MachineObservation\n", - "11 1 1 MachineObservation\n", - "12 1 1 MachineObservation\n", - "13 1 1 MachineObservation\n", - "14 1 1 MachineObservation\n", - "15 1 1 MachineObservation\n", - "16 1 1 MachineObservation\n", - "17 1 1 MachineObservation\n", - "18 1 1 MachineObservation\n", - "19 1 1 MachineObservation\n", - "20 1 1 MachineObservation\n", - "21 1 3 MachineObservation\n", - "22 1 1 MachineObservation\n", - "23 1 1 MachineObservation\n", - "24 1 1 MachineObservation\n", - "25 1 1 MachineObservation\n", - "26 1 1 MachineObservation\n", - "27 1 1 MachineObservation\n", - "28 1 1 MachineObservation\n", - "29 1 1 MachineObservation\n", - " organismID eventDate \n", - "1 105838_great_white_shark 2009-09-23T00:00:00Z\n", - "2 105838_great_white_shark 2009-09-25T06:42:00Z\n", - "3 105838_great_white_shark 2009-09-25T11:09:00Z\n", - "4 105838_great_white_shark 2009-09-25T11:11:00Z\n", - "5 105838_great_white_shark 2009-09-27T17:58:00Z\n", - "6 105838_great_white_shark 2009-09-30T05:01:00Z\n", - "7 105838_great_white_shark 2009-10-08T20:24:00Z\n", - "8 105838_great_white_shark 2009-10-15T11:05:00Z\n", - "9 105838_great_white_shark 2009-10-17T06:11:00Z\n", - "10 105838_great_white_shark 2009-10-17T09:00:00Z\n", - "11 105838_great_white_shark 2009-10-17T10:38:00Z\n", - "12 105838_great_white_shark 2009-10-18T08:48:00Z\n", - "13 105838_great_white_shark 2009-10-18T10:26:00Z\n", - "14 105838_great_white_shark 2009-10-18T11:15:00Z\n", - "15 105838_great_white_shark 2009-10-19T10:20:00Z\n", - "16 105838_great_white_shark 2009-10-23T23:52:00Z\n", - "17 105838_great_white_shark 2009-10-24T00:06:00Z\n", - "18 105838_great_white_shark 2009-10-26T10:53:00Z\n", - "19 105838_great_white_shark 2009-10-26T11:22:00Z\n", - "20 105838_great_white_shark 2009-10-27T16:21:00Z\n", - "21 105838_great_white_shark 2009-10-27T16:22:00Z\n", - "22 105838_great_white_shark 2009-10-29T11:53:00Z\n", - "23 105838_great_white_shark 2009-10-30T10:03:00Z\n", - "24 105838_great_white_shark 2009-10-31T19:48:00Z\n", - "25 105838_great_white_shark 2009-10-31T21:15:00Z\n", - "26 105838_great_white_shark 2009-11-01T21:04:00Z\n", - "27 105838_great_white_shark 2009-11-06T17:53:00Z\n", - "28 105838_great_white_shark 2009-11-13T18:48:00Z\n", - "29 105838_great_white_shark 2009-11-23T05:12:00Z\n", - " occurrenceID decimalLatitude decimalLongitude\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 34.030 -118.560 \n", - "2 2009-09-25T06:42:00Z_0_great_white_shark 23.590 -166.180 \n", - "3 2009-09-25T11:09:00Z_0_great_white_shark 34.024 -118.556 \n", - "4 2009-09-25T11:11:00Z_0_great_white_shark 34.035 -118.549 \n", - "5 2009-09-27T17:58:00Z_0_great_white_shark 34.033 -118.547 \n", - "6 2009-09-30T05:01:00Z_0_great_white_shark 33.517 -119.750 \n", - "7 2009-10-08T20:24:00Z_0_great_white_shark 34.038 -118.581 \n", - "8 2009-10-15T11:05:00Z_0_great_white_shark 33.995 -118.678 \n", - "9 2009-10-17T06:11:00Z_0_great_white_shark 34.037 -118.545 \n", - "10 2009-10-17T09:00:00Z_0_great_white_shark 34.026 -118.534 \n", - "11 2009-10-17T10:38:00Z_0_great_white_shark 34.027 -118.545 \n", - "12 2009-10-18T08:48:00Z_0_great_white_shark 34.039 -118.548 \n", - "13 2009-10-18T10:26:00Z_0_great_white_shark 34.031 -118.541 \n", - "14 2009-10-18T11:15:00Z_0_great_white_shark 34.041 -118.535 \n", - "15 2009-10-19T10:20:00Z_0_great_white_shark 34.036 -118.557 \n", - "16 2009-10-23T23:52:00Z_0_great_white_shark 33.999 -118.612 \n", - "17 2009-10-24T00:06:00Z_0_great_white_shark 34.002 -118.604 \n", - "18 2009-10-26T10:53:00Z_0_great_white_shark 34.022 -118.537 \n", - "19 2009-10-26T11:22:00Z_0_great_white_shark 34.021 -118.570 \n", - "20 2009-10-27T16:21:00Z_0_great_white_shark 34.010 -118.524 \n", - "21 2009-10-27T16:22:00Z_0_great_white_shark 34.006 -118.526 \n", - "22 2009-10-29T11:53:00Z_0_great_white_shark 33.989 -118.504 \n", - "23 2009-10-30T10:03:00Z_0_great_white_shark 34.021 -118.557 \n", - "24 2009-10-31T19:48:00Z_0_great_white_shark 34.005 -118.591 \n", - "25 2009-10-31T21:15:00Z_0_great_white_shark 34.045 -118.530 \n", - "26 2009-11-01T21:04:00Z_0_great_white_shark 34.043 -118.541 \n", - "27 2009-11-06T17:53:00Z_0_great_white_shark 34.021 -118.611 \n", - "28 2009-11-13T18:48:00Z_0_great_white_shark 33.993 -118.602 \n", - "29 2009-11-23T05:12:00Z_0_great_white_shark 33.972 -118.534 \n", - " geodeticDatum eventID kingdom taxonRank\n", - "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z Animalia Species \n", - "2 EPSG:4326 great_white shark_2009-09-25T06:42:00Z Animalia Species \n", - "3 EPSG:4326 great_white shark_2009-09-25T11:09:00Z Animalia Species \n", - "4 EPSG:4326 great_white shark_2009-09-25T11:11:00Z Animalia Species \n", - "5 EPSG:4326 great_white shark_2009-09-27T17:58:00Z Animalia Species \n", - "6 EPSG:4326 great_white shark_2009-09-30T05:01:00Z Animalia Species \n", - "7 EPSG:4326 great_white shark_2009-10-08T20:24:00Z Animalia Species \n", - "8 EPSG:4326 great_white shark_2009-10-15T11:05:00Z Animalia Species \n", - "9 EPSG:4326 great_white shark_2009-10-17T06:11:00Z Animalia Species \n", - "10 EPSG:4326 great_white shark_2009-10-17T09:00:00Z Animalia Species \n", - "11 EPSG:4326 great_white shark_2009-10-17T10:38:00Z Animalia Species \n", - "12 EPSG:4326 great_white shark_2009-10-18T08:48:00Z Animalia Species \n", - "13 EPSG:4326 great_white shark_2009-10-18T10:26:00Z Animalia Species \n", - "14 EPSG:4326 great_white shark_2009-10-18T11:15:00Z Animalia Species \n", - "15 EPSG:4326 great_white shark_2009-10-19T10:20:00Z Animalia Species \n", - "16 EPSG:4326 great_white shark_2009-10-23T23:52:00Z Animalia Species \n", - "17 EPSG:4326 great_white shark_2009-10-24T00:06:00Z Animalia Species \n", - "18 EPSG:4326 great_white shark_2009-10-26T10:53:00Z Animalia Species \n", - "19 EPSG:4326 great_white shark_2009-10-26T11:22:00Z Animalia Species \n", - "20 EPSG:4326 great_white shark_2009-10-27T16:21:00Z Animalia Species \n", - "21 EPSG:4326 great_white shark_2009-10-27T16:22:00Z Animalia Species \n", - "22 EPSG:4326 great_white shark_2009-10-29T11:53:00Z Animalia Species \n", - "23 EPSG:4326 great_white shark_2009-10-30T10:03:00Z Animalia Species \n", - "24 EPSG:4326 great_white shark_2009-10-31T19:48:00Z Animalia Species \n", - "25 EPSG:4326 great_white shark_2009-10-31T21:15:00Z Animalia Species \n", - "26 EPSG:4326 great_white shark_2009-11-01T21:04:00Z Animalia Species \n", - "27 EPSG:4326 great_white shark_2009-11-06T17:53:00Z Animalia Species \n", - "28 EPSG:4326 great_white shark_2009-11-13T18:48:00Z Animalia Species \n", - "29 EPSG:4326 great_white shark_2009-11-23T05:12:00Z Animalia Species \n", - " occurrenceStatus sex lifeStage scientificName \n", - "1 present male juvenile Carcharodon carcharias\n", - "2 present male juvenile Carcharodon carcharias\n", - "3 present male juvenile Carcharodon carcharias\n", - "4 present male juvenile Carcharodon carcharias\n", - "5 present male juvenile Carcharodon carcharias\n", - "6 present male juvenile Carcharodon carcharias\n", - "7 present male juvenile Carcharodon carcharias\n", - "8 present male juvenile Carcharodon carcharias\n", - "9 present male juvenile Carcharodon carcharias\n", - "10 present male juvenile Carcharodon carcharias\n", - "11 present male juvenile Carcharodon carcharias\n", - "12 present male juvenile Carcharodon carcharias\n", - "13 present male juvenile Carcharodon carcharias\n", - "14 present male juvenile Carcharodon carcharias\n", - "15 present male juvenile Carcharodon carcharias\n", - "16 present male juvenile Carcharodon carcharias\n", - "17 present male juvenile Carcharodon carcharias\n", - "18 present male juvenile Carcharodon carcharias\n", - "19 present male juvenile Carcharodon carcharias\n", - "20 present male juvenile Carcharodon carcharias\n", - "21 present male juvenile Carcharodon carcharias\n", - "22 present male juvenile Carcharodon carcharias\n", - "23 present male juvenile Carcharodon carcharias\n", - "24 present male juvenile Carcharodon carcharias\n", - "25 present male juvenile Carcharodon carcharias\n", - "26 present male juvenile Carcharodon carcharias\n", - "27 present male juvenile Carcharodon carcharias\n", - "28 present male juvenile Carcharodon carcharias\n", - "29 present male juvenile Carcharodon carcharias\n", - " scientificNameID \n", - "1 urn:lsid:marinespecies.org:taxname:105838\n", - "2 urn:lsid:marinespecies.org:taxname:105838\n", - "3 urn:lsid:marinespecies.org:taxname:105838\n", - "4 urn:lsid:marinespecies.org:taxname:105838\n", - "5 urn:lsid:marinespecies.org:taxname:105838\n", - "6 urn:lsid:marinespecies.org:taxname:105838\n", - "7 urn:lsid:marinespecies.org:taxname:105838\n", - "8 urn:lsid:marinespecies.org:taxname:105838\n", - "9 urn:lsid:marinespecies.org:taxname:105838\n", - "10 urn:lsid:marinespecies.org:taxname:105838\n", - "11 urn:lsid:marinespecies.org:taxname:105838\n", - "12 urn:lsid:marinespecies.org:taxname:105838\n", - "13 urn:lsid:marinespecies.org:taxname:105838\n", - "14 urn:lsid:marinespecies.org:taxname:105838\n", - "15 urn:lsid:marinespecies.org:taxname:105838\n", - "16 urn:lsid:marinespecies.org:taxname:105838\n", - "17 urn:lsid:marinespecies.org:taxname:105838\n", - "18 urn:lsid:marinespecies.org:taxname:105838\n", - "19 urn:lsid:marinespecies.org:taxname:105838\n", - "20 urn:lsid:marinespecies.org:taxname:105838\n", - "21 urn:lsid:marinespecies.org:taxname:105838\n", - "22 urn:lsid:marinespecies.org:taxname:105838\n", - "23 urn:lsid:marinespecies.org:taxname:105838\n", - "24 urn:lsid:marinespecies.org:taxname:105838\n", - "25 urn:lsid:marinespecies.org:taxname:105838\n", - "26 urn:lsid:marinespecies.org:taxname:105838\n", - "27 urn:lsid:marinespecies.org:taxname:105838\n", - "28 urn:lsid:marinespecies.org:taxname:105838\n", - "29 urn:lsid:marinespecies.org:taxname:105838" + " eventDate decimalLatitude decimalLongitude basisOfRecord \n", + "1 2009-09-23T00:00:00Z 34.030 -118.560 HumanObservation \n", + "2 2009-09-25T06:42:00Z 23.590 -166.180 MachineObservation\n", + "3 2009-09-25T11:09:00Z 34.024 -118.556 MachineObservation\n", + "4 2009-09-25T11:11:00Z 34.035 -118.549 MachineObservation\n", + "5 2009-09-27T17:58:00Z 34.033 -118.547 MachineObservation\n", + "6 2009-09-30T05:01:00Z 33.517 -119.750 MachineObservation\n", + "7 2009-10-08T20:24:00Z 34.038 -118.581 MachineObservation\n", + "8 2009-10-15T11:05:00Z 33.995 -118.678 MachineObservation\n", + "9 2009-10-17T06:11:00Z 34.037 -118.545 MachineObservation\n", + "10 2009-10-17T09:00:00Z 34.026 -118.534 MachineObservation\n", + "11 2009-10-17T10:38:00Z 34.027 -118.545 MachineObservation\n", + "12 2009-10-18T08:48:00Z 34.039 -118.548 MachineObservation\n", + "13 2009-10-18T10:26:00Z 34.031 -118.541 MachineObservation\n", + "14 2009-10-18T11:15:00Z 34.041 -118.535 MachineObservation\n", + "15 2009-10-19T10:20:00Z 34.036 -118.557 MachineObservation\n", + "16 2009-10-23T23:52:00Z 33.999 -118.612 MachineObservation\n", + "17 2009-10-24T00:06:00Z 34.002 -118.604 MachineObservation\n", + "18 2009-10-26T10:53:00Z 34.022 -118.537 MachineObservation\n", + "19 2009-10-26T11:22:00Z 34.021 -118.570 MachineObservation\n", + "20 2009-10-27T16:21:00Z 34.010 -118.524 MachineObservation\n", + "21 2009-10-27T16:22:00Z 34.006 -118.526 MachineObservation\n", + "22 2009-10-29T11:53:00Z 33.989 -118.504 MachineObservation\n", + "23 2009-10-30T10:03:00Z 34.021 -118.557 MachineObservation\n", + "24 2009-10-31T19:48:00Z 34.005 -118.591 MachineObservation\n", + "25 2009-10-31T21:15:00Z 34.045 -118.530 MachineObservation\n", + "26 2009-11-01T21:04:00Z 34.043 -118.541 MachineObservation\n", + "27 2009-11-06T17:53:00Z 34.021 -118.611 MachineObservation\n", + "28 2009-11-13T18:48:00Z 33.993 -118.602 MachineObservation\n", + "29 2009-11-23T05:12:00Z 33.972 -118.534 MachineObservation\n", + " location_class qartod_time_flag qartod_speed_flag qartod_location_flag\n", + "1 nan 1 2 1 \n", + "2 A 1 4 1 \n", + "3 1 1 4 1 \n", + "4 0 1 4 1 \n", + "5 1 1 1 1 \n", + "6 B 1 1 1 \n", + "7 2 1 1 1 \n", + "8 0 1 1 1 \n", + "9 0 1 1 1 \n", + "10 2 1 1 1 \n", + "11 3 1 1 1 \n", + "12 1 1 1 1 \n", + "13 2 1 1 1 \n", + "14 0 1 1 1 \n", + "15 A 1 1 1 \n", + "16 2 1 1 1 \n", + "17 0 1 1 1 \n", + "18 3 1 1 1 \n", + "19 B 1 1 1 \n", + "20 1 1 1 1 \n", + "21 2 1 3 1 \n", + "22 2 1 1 1 \n", + "23 A 1 1 1 \n", + "24 A 1 1 1 \n", + "25 0 1 1 1 \n", + "26 A 1 1 1 \n", + "27 B 1 1 1 \n", + "28 A 1 1 1 \n", + "29 B 1 1 1 \n", + " qartod_rollup_flag kingdom taxonRank occurrenceStatus sex lifeStage\n", + "1 1 Animalia Species present male juvenile \n", + "2 4 Animalia Species present male juvenile \n", + "3 4 Animalia Species present male juvenile \n", + "4 4 Animalia Species present male juvenile \n", + "5 1 Animalia Species present male juvenile \n", + "6 1 Animalia Species present male juvenile \n", + "7 1 Animalia Species present male juvenile \n", + "8 1 Animalia Species present male juvenile \n", + "9 1 Animalia Species present male juvenile \n", + "10 1 Animalia Species present male juvenile \n", + "11 1 Animalia Species present male juvenile \n", + "12 1 Animalia Species present male juvenile \n", + "13 1 Animalia Species present male juvenile \n", + "14 1 Animalia Species present male juvenile \n", + "15 1 Animalia Species present male juvenile \n", + "16 1 Animalia Species present male juvenile \n", + "17 1 Animalia Species present male juvenile \n", + "18 1 Animalia Species present male juvenile \n", + "19 1 Animalia Species present male juvenile \n", + "20 1 Animalia Species present male juvenile \n", + "21 3 Animalia Species present male juvenile \n", + "22 1 Animalia Species present male juvenile \n", + "23 1 Animalia Species present male juvenile \n", + "24 1 Animalia Species present male juvenile \n", + "25 1 Animalia Species present male juvenile \n", + "26 1 Animalia Species present male juvenile \n", + "27 1 Animalia Species present male juvenile \n", + "28 1 Animalia Species present male juvenile \n", + "29 1 Animalia Species present male juvenile \n", + " scientificName scientificNameID \n", + "1 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "2 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "3 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "4 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "5 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "6 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "7 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "8 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "9 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "10 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "11 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "12 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "13 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "14 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "15 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "16 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "17 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "18 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "19 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "20 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "21 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "22 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "23 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "24 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "25 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "26 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "27 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "28 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "29 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + " organismID occurrenceID \n", + "1 105838_great_white_shark 2009-09-23T00:00:00Z_0_great_white_shark\n", + "2 105838_great_white_shark 2009-09-25T06:42:00Z_0_great_white_shark\n", + "3 105838_great_white_shark 2009-09-25T11:09:00Z_0_great_white_shark\n", + "4 105838_great_white_shark 2009-09-25T11:11:00Z_0_great_white_shark\n", + "5 105838_great_white_shark 2009-09-27T17:58:00Z_0_great_white_shark\n", + "6 105838_great_white_shark 2009-09-30T05:01:00Z_0_great_white_shark\n", + "7 105838_great_white_shark 2009-10-08T20:24:00Z_0_great_white_shark\n", + "8 105838_great_white_shark 2009-10-15T11:05:00Z_0_great_white_shark\n", + "9 105838_great_white_shark 2009-10-17T06:11:00Z_0_great_white_shark\n", + "10 105838_great_white_shark 2009-10-17T09:00:00Z_0_great_white_shark\n", + "11 105838_great_white_shark 2009-10-17T10:38:00Z_0_great_white_shark\n", + "12 105838_great_white_shark 2009-10-18T08:48:00Z_0_great_white_shark\n", + "13 105838_great_white_shark 2009-10-18T10:26:00Z_0_great_white_shark\n", + "14 105838_great_white_shark 2009-10-18T11:15:00Z_0_great_white_shark\n", + "15 105838_great_white_shark 2009-10-19T10:20:00Z_0_great_white_shark\n", + "16 105838_great_white_shark 2009-10-23T23:52:00Z_0_great_white_shark\n", + "17 105838_great_white_shark 2009-10-24T00:06:00Z_0_great_white_shark\n", + "18 105838_great_white_shark 2009-10-26T10:53:00Z_0_great_white_shark\n", + "19 105838_great_white_shark 2009-10-26T11:22:00Z_0_great_white_shark\n", + "20 105838_great_white_shark 2009-10-27T16:21:00Z_0_great_white_shark\n", + "21 105838_great_white_shark 2009-10-27T16:22:00Z_0_great_white_shark\n", + "22 105838_great_white_shark 2009-10-29T11:53:00Z_0_great_white_shark\n", + "23 105838_great_white_shark 2009-10-30T10:03:00Z_0_great_white_shark\n", + "24 105838_great_white_shark 2009-10-31T19:48:00Z_0_great_white_shark\n", + "25 105838_great_white_shark 2009-10-31T21:15:00Z_0_great_white_shark\n", + "26 105838_great_white_shark 2009-11-01T21:04:00Z_0_great_white_shark\n", + "27 105838_great_white_shark 2009-11-06T17:53:00Z_0_great_white_shark\n", + "28 105838_great_white_shark 2009-11-13T18:48:00Z_0_great_white_shark\n", + "29 105838_great_white_shark 2009-11-23T05:12:00Z_0_great_white_shark\n", + " geodeticDatum eventID \n", + "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z\n", + "2 EPSG:4326 great_white shark_2009-09-25T06:42:00Z\n", + "3 EPSG:4326 great_white shark_2009-09-25T11:09:00Z\n", + "4 EPSG:4326 great_white shark_2009-09-25T11:11:00Z\n", + "5 EPSG:4326 great_white shark_2009-09-27T17:58:00Z\n", + "6 EPSG:4326 great_white shark_2009-09-30T05:01:00Z\n", + "7 EPSG:4326 great_white shark_2009-10-08T20:24:00Z\n", + "8 EPSG:4326 great_white shark_2009-10-15T11:05:00Z\n", + "9 EPSG:4326 great_white shark_2009-10-17T06:11:00Z\n", + "10 EPSG:4326 great_white shark_2009-10-17T09:00:00Z\n", + "11 EPSG:4326 great_white shark_2009-10-17T10:38:00Z\n", + "12 EPSG:4326 great_white shark_2009-10-18T08:48:00Z\n", + "13 EPSG:4326 great_white shark_2009-10-18T10:26:00Z\n", + "14 EPSG:4326 great_white shark_2009-10-18T11:15:00Z\n", + "15 EPSG:4326 great_white shark_2009-10-19T10:20:00Z\n", + "16 EPSG:4326 great_white shark_2009-10-23T23:52:00Z\n", + "17 EPSG:4326 great_white shark_2009-10-24T00:06:00Z\n", + "18 EPSG:4326 great_white shark_2009-10-26T10:53:00Z\n", + "19 EPSG:4326 great_white shark_2009-10-26T11:22:00Z\n", + "20 EPSG:4326 great_white shark_2009-10-27T16:21:00Z\n", + "21 EPSG:4326 great_white shark_2009-10-27T16:22:00Z\n", + "22 EPSG:4326 great_white shark_2009-10-29T11:53:00Z\n", + "23 EPSG:4326 great_white shark_2009-10-30T10:03:00Z\n", + "24 EPSG:4326 great_white shark_2009-10-31T19:48:00Z\n", + "25 EPSG:4326 great_white shark_2009-10-31T21:15:00Z\n", + "26 EPSG:4326 great_white shark_2009-11-01T21:04:00Z\n", + "27 EPSG:4326 great_white shark_2009-11-06T17:53:00Z\n", + "28 EPSG:4326 great_white shark_2009-11-13T18:48:00Z\n", + "29 EPSG:4326 great_white shark_2009-11-23T05:12:00Z" ] }, "metadata": {}, @@ -3992,23 +3677,109 @@ ], "source": [ "# occurrence Core/Extension\n", - "occurrencedf <- data.frame( atn_tbl$time, \n", - " atn_tbl$lat, \n", - " atn_tbl$lon, \n", - " atn_tbl$type, \n", - " atn_tbl$location_class, \n", - " atn_tbl$qartod_time_flag,\n", - " atn_tbl$qartod_speed_flag, \n", - " atn_tbl$qartod_location_flag, \n", - " atn_tbl$qartod_rollup_flag\n", - " )\n", + "# occurrencedf <- data.frame( atn_tbl$time, \n", + "# atn_tbl$lat, \n", + "# atn_tbl$lon, \n", + "# atn_tbl$type, \n", + "# atn_tbl$location_class, \n", + "# atn_tbl$qartod_time_flag,\n", + "# atn_tbl$qartod_speed_flag, \n", + "# atn_tbl$qartod_location_flag, \n", + "# atn_tbl$qartod_rollup_flag\n", + "# )\n", + "\n", "\n", "# basisOfRecord\n", - "occurrencedf$basisOfRecord <- occurrencedf$atn_tbl.type\n", - "occurrencedf$atn_tbl.type <- NULL\n", + "#occurrencedf$basisOfRecord <- occurrencedf$atn_tbl.type\n", + "#occurrencedf$atn_tbl.type <- NULL\n", + "\n", + "#occurrencedf <- occurrencedf %>% mutate(across('basisOfRecord', str_replace, 'User', 'HumanObservation')) #%>% dplyr::filter(variable==\"type\")\n", + "#occurrencedf <- occurrencedf %>% mutate(across('basisOfRecord', str_replace, 'Argos', 'MachineObservation'))\n", + "\n", + "# eventDate - see above\n", + "# occurrencedf$eventDate <- format(occurrencedf$atn_tbl.time, '%Y-%m-%dT%H:%M:%SZ')\n", + "# occurrencedf$atn_tbl.time <- NULL\n", + "\n", + "#decimalLatitude\n", + "# occurrencedf$decimalLatitude <- occurrencedf$atn_tbl.lat\n", + "# occurrencedf$atn_tbl.lat <- NULL\n", + "\n", + "#decimalLongitude\n", + "# occurrencedf$decimalLongitude <- occurrencedf$atn_tbl.lon\n", + "# occurrencedf$atn_tbl.lon <- NULL\n", + "\n", + "# kingdom\n", + "# kingdom_tbl <- metadata %>% dplyr::filter(variable == \"animal\") %>% dplyr::filter(name == \"kingdom\")\n", + "# occurrencedf$kingdom <- paste(kingdom_tbl$value)\n", + "\n", + "# taxonRank\n", + "# rank_tbl <- metadata %>% dplyr::filter(variable == \"animal\") %>% dplyr::filter(name == \"rank\")\n", + "# occurrencedf$taxonRank <- paste(rank_tbl$value)\n", + "\n", + "#add occurrenceStatus\n", + "# occurrencedf$occurrenceStatus <- \"present\"\n", + "\n", + "# Use ncdf4 to get other variables\n", + "# library(ncdf4) - loaded above\n", + "\n", + "# nc <- nc_open(fname)\n", + "\n", + "#add sex\n", + "# occurrencedf$sex <- ncvar_get( nc, 'animal_sex')\n", + "\n", + "#add lifeStage\n", + "# occurrencedf$lifeStage <- ncvar_get( nc, 'animal_life_stage')\n", + "\n", + "# scientificName\n", + "# occurrencedf$scientificName <- ncvar_get( nc, 'taxon_name')\n", + "\n", + "# scientificNameId\n", + "# value of taxon_lsid var\n", + "# occurrencedf$scientificNameID <- ncvar_get( nc, \"taxon_lsid\")\n", "\n", - "occurrencedf <- occurrencedf %>% mutate(across('basisOfRecord', str_replace, 'User', 'HumanObservation')) #%>% dplyr::filter(variable==\"type\")\n", - "occurrencedf <- occurrencedf %>% mutate(across('basisOfRecord', str_replace, 'Argos', 'MachineObservation'))\n", + "# sort table by increasing date\n", + "# occurrencedf <- occurrencedf %>% arrange(eventDate)\n", + "\n", + "######### This is a succinct version of everything commented out above. I'm not sure if any important readability is lost. \n", + "# Just thought I'd point it out in case you didn't know these functions well.\n", + "\n", + "# Defined to grab attributes in subsequent code\n", + "nc <- nc_open(fname)\n", + "\n", + "occurrencedf <- atn_tbl %>% \n", + " select( # Select desired columns\n", + " \n", + " time, \n", + " lat,\n", + " lon,\n", + " type,\n", + " location_class,\n", + " qartod_time_flag,\n", + " qartod_speed_flag,\n", + " qartod_location_flag,\n", + " qartod_rollup_flag\n", + " ) %>%\n", + " mutate( # add and mutate columns\n", + " \n", + " type = case_when(type == 'User' ~ 'HumanObservation',\n", + " type == 'Argos' ~ 'MachineObservation'),\n", + " time = format(time, '%Y-%m-%dT%H:%M:%SZ'),\n", + " kingdom = metadata %>% dplyr::filter(variable == \"animal\" & name == \"kingdom\") %>% pull(value) %>% unlist(use.names = FALSE),\n", + " taxonRank = metadata %>% dplyr::filter(variable == \"animal\" & name == \"rank\") %>% pull(value) %>% unlist(use.names = FALSE),\n", + " occurrenceStatus = \"present\",\n", + " sex = ncvar_get( nc, 'animal_sex'),\n", + " lifeStage = ncvar_get( nc, 'animal_life_stage'),\n", + " scientificName = ncvar_get( nc, 'taxon_name'),\n", + " scientificNameID = ncvar_get( nc, \"taxon_lsid\")\n", + " ) %>%\n", + " rename( # rename columns to Darwin Core terms\n", + " \n", + " basisOfRecord = type,\n", + " eventDate = time,\n", + " decimalLatitude = lat,\n", + " decimalLongitude = lon) %>% \n", + "\n", + " arrange(eventDate) #arrange by increasing date\n", "\n", "# organismID\n", "# platformID + common name\n", @@ -4020,30 +3791,16 @@ "\n", "occurrencedf$organismID <- paste(platform_id , common_name, sep = \"_\") # add first date occurrencedf %>% mutate(across('basisOfRecord', str_replace, 'User', 'HumanObservation'))\n", "\n", - "# eventDate\n", - "occurrencedf$eventDate <- format(occurrencedf$atn_tbl.time, '%Y-%m-%dT%H:%M:%SZ')\n", - "occurrencedf$atn_tbl.time <- NULL\n", - "\n", "# occurrenceID\n", "#rank_tbl <- metadata %>% dplyr::filter(variable == \"animal\") %>% dplyr::filter(name == \"rank\")\n", "#rank <- chartr(\" \", \"_\", rank_tbl$value)\n", "\n", "occurrencedf$occurrenceID <- sub(\" \", \"_\", paste(occurrencedf$eventDate, atn_tbl$z, common_name, sep = \"_\"))\n", "\n", - "#decimalLatitude\n", - "occurrencedf$decimalLatitude <- occurrencedf$atn_tbl.lat\n", - "occurrencedf$atn_tbl.lat <- NULL\n", - "\n", - "#decimalLongitude\n", - "occurrencedf$decimalLongitude <- occurrencedf$atn_tbl.lon\n", - "occurrencedf$atn_tbl.lon <- NULL\n", - "\n", "# geodeticDatum\n", "gd_tbl <- metadata %>% dplyr::filter(variable == \"crs\") %>% dplyr::filter(name == \"epsg_code\")\n", "occurrencedf$geodeticDatum <- paste(gd_tbl$value)\n", "\n", - "\n", - "\n", "# eventID\n", "#eventID - {common_name}_{dateTime}\n", "cname = metadata %>% dplyr::filter(variable == \"NC_GLOBAL\") %>% dplyr::filter(name == \"animal_common_name\")\n", @@ -4054,49 +3811,54 @@ "# samplingProtocol\n", "# don't have a mapping yet\n", "\n", - "\n", - "# kingdom\n", - "kingdom_tbl <- metadata %>% dplyr::filter(variable == \"animal\") %>% dplyr::filter(name == \"kingdom\")\n", - "occurrencedf$kingdom <- paste(kingdom_tbl$value)\n", - "\n", - "# taxonRank\n", - "rank_tbl <- metadata %>% dplyr::filter(variable == \"animal\") %>% dplyr::filter(name == \"rank\")\n", - "occurrencedf$taxonRank <- paste(rank_tbl$value)\n", - "\n", "#drop unnecessary cols\n", "#occurrencedf$eventDate <- NULL\n", "#occurrencedf$decimalLatitude <- NULL\n", "#occurrencedf$decimalLongitude <- NULL\n", "#occurrencedf$geodeticDatum <- NULL\n", "\n", - "#add occurrenceStatus\n", - "occurrencedf$occurrenceStatus <- \"present\"\n", - "\n", - "# Use ncdf4 to get other variables\n", - "library(ncdf4)\n", - "nc <- nc_open(fname)\n", - "\n", - "#add sex\n", - "occurrencedf$sex <- ncvar_get( nc, 'animal_sex')\n", - "\n", - "#add lifeStage\n", - "occurrencedf$lifeStage <- ncvar_get( nc, 'animal_life_stage')\n", - "\n", - "# scientificName\n", - "occurrencedf$scientificName <- ncvar_get( nc, 'taxon_name')\n", - "\n", - "# scientificNameId\n", - "# value of taxon_lsid var\n", - "occurrencedf$scientificNameID <- ncvar_get( nc, \"taxon_lsid\")\n", - "\n", - "# sort table by increasing date\n", - "occurrencedf <- occurrencedf %>% arrange(eventDate)\n", - "\n", "#occurrencedf$coordinateUncertaintyInMeters <- pmax(atn_tbl$error_radius, atn_tbl$semi_major_axis, atn_tbl$semi_minor_axis, atn_tbl$offset, na.rm = TRUE)\n", "\n", "occurrencedf" ] }, + { + "cell_type": "code", + "execution_count": 34, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "tibble [29 x 20] (S3: tbl_df/tbl/data.frame)\n", + " $ eventDate : chr [1:29] \"2009-09-23T00:00:00Z\" \"2009-09-25T06:42:00Z\" \"2009-09-25T11:09:00Z\" \"2009-09-25T11:11:00Z\" ...\n", + " $ decimalLatitude : num [1:29] 34 23.6 34 34 34 ...\n", + " $ decimalLongitude : num [1:29] -119 -166 -119 -119 -119 ...\n", + " $ basisOfRecord : chr [1:29] \"HumanObservation\" \"MachineObservation\" \"MachineObservation\" \"MachineObservation\" ...\n", + " $ location_class : chr [1:29] \"nan\" \"A\" \"1\" \"0\" ...\n", + " $ qartod_time_flag : int [1:29] 1 1 1 1 1 1 1 1 1 1 ...\n", + " $ qartod_speed_flag : int [1:29] 2 4 4 4 1 1 1 1 1 1 ...\n", + " $ qartod_location_flag: int [1:29] 1 1 1 1 1 1 1 1 1 1 ...\n", + " $ qartod_rollup_flag : int [1:29] 1 4 4 4 1 1 1 1 1 1 ...\n", + " $ kingdom : chr [1:29] \"Animalia\" \"Animalia\" \"Animalia\" \"Animalia\" ...\n", + " $ taxonRank : chr [1:29] \"Species\" \"Species\" \"Species\" \"Species\" ...\n", + " $ occurrenceStatus : chr [1:29] \"present\" \"present\" \"present\" \"present\" ...\n", + " $ sex : chr [1:29] \"male\" \"male\" \"male\" \"male\" ...\n", + " $ lifeStage : chr [1:29] \"juvenile\" \"juvenile\" \"juvenile\" \"juvenile\" ...\n", + " $ scientificName : chr [1:29] \"Carcharodon carcharias\" \"Carcharodon carcharias\" \"Carcharodon carcharias\" \"Carcharodon carcharias\" ...\n", + " $ scientificNameID : chr [1:29] \"urn:lsid:marinespecies.org:taxname:105838\" \"urn:lsid:marinespecies.org:taxname:105838\" \"urn:lsid:marinespecies.org:taxname:105838\" \"urn:lsid:marinespecies.org:taxname:105838\" ...\n", + " $ organismID : chr [1:29] \"105838_great_white_shark\" \"105838_great_white_shark\" \"105838_great_white_shark\" \"105838_great_white_shark\" ...\n", + " $ occurrenceID : chr [1:29] \"2009-09-23T00:00:00Z_0_great_white_shark\" \"2009-09-25T06:42:00Z_0_great_white_shark\" \"2009-09-25T11:09:00Z_0_great_white_shark\" \"2009-09-25T11:11:00Z_0_great_white_shark\" ...\n", + " $ geodeticDatum : chr [1:29] \"EPSG:4326\" \"EPSG:4326\" \"EPSG:4326\" \"EPSG:4326\" ...\n", + " $ eventID : chr [1:29] \"great_white shark_2009-09-23T00:00:00Z\" \"great_white shark_2009-09-25T06:42:00Z\" \"great_white shark_2009-09-25T11:09:00Z\" \"great_white shark_2009-09-25T11:11:00Z\" ...\n" + ] + } + ], + "source": [ + "str(occurrencedf)" + ] + }, { "cell_type": "markdown", "metadata": {}, @@ -4135,236 +3897,236 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": 35, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", "\n", "
A data.frame: 19 × 21A tibble: 19 × 21
atn_tbl.location_classatn_tbl.qartod_time_flagatn_tbl.qartod_speed_flagatn_tbl.qartod_location_flagatn_tbl.qartod_rollup_flagbasisOfRecordorganismIDeventDateoccurrenceIDdecimalLatitudedecimalLongitudegeodeticDatumeventIDkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDcoordinateUncertaintyInMeters
<chr><int><int><int><int><chr><chr><chr><chr><dbl><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
eventDatedecimalLatitudedecimalLongitudebasisOfRecordlocation_classqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDorganismIDoccurrenceIDgeodeticDatumeventIDcoordinateUncertaintyInMeters
<chr><dbl><dbl><chr><chr><int><int><int><int><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><dbl>
nan1211HumanObservation 105838_great_white_shark2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark34.030-118.560EPSG:4326great_white shark_2009-09-23T00:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058380
1 1414MachineObservation105838_great_white_shark2009-09-25T11:09:00Z2009-09-25T11:09:00Z_0_great_white_shark34.024-118.556EPSG:4326great_white shark_2009-09-25T11:09:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
0 1414MachineObservation105838_great_white_shark2009-09-25T11:11:00Z2009-09-25T11:11:00Z_0_great_white_shark34.035-118.549EPSG:4326great_white shark_2009-09-25T11:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
1 1111MachineObservation105838_great_white_shark2009-09-27T17:58:00Z2009-09-27T17:58:00Z_0_great_white_shark34.033-118.547EPSG:4326great_white shark_2009-09-27T17:58:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-08T20:24:00Z2009-10-08T20:24:00Z_0_great_white_shark34.038-118.581EPSG:4326great_white shark_2009-10-08T20:24:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-15T11:05:00Z2009-10-15T11:05:00Z_0_great_white_shark33.995-118.678EPSG:4326great_white shark_2009-10-15T11:05:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
0 1111MachineObservation105838_great_white_shark2009-10-17T06:11:00Z2009-10-17T06:11:00Z_0_great_white_shark34.037-118.545EPSG:4326great_white shark_2009-10-17T06:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-17T09:00:00Z2009-10-17T09:00:00Z_0_great_white_shark34.026-118.534EPSG:4326great_white shark_2009-10-17T09:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
3 1111MachineObservation105838_great_white_shark2009-10-17T10:38:00Z2009-10-17T10:38:00Z_0_great_white_shark34.027-118.545EPSG:4326great_white shark_2009-10-17T10:38:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-18T08:48:00Z2009-10-18T08:48:00Z_0_great_white_shark34.039-118.548EPSG:4326great_white shark_2009-10-18T08:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-18T10:26:00Z2009-10-18T10:26:00Z_0_great_white_shark34.031-118.541EPSG:4326great_white shark_2009-10-18T10:26:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-18T11:15:00Z2009-10-18T11:15:00Z_0_great_white_shark34.041-118.535EPSG:4326great_white shark_2009-10-18T11:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-23T23:52:00Z2009-10-23T23:52:00Z_0_great_white_shark33.999-118.612EPSG:4326great_white shark_2009-10-23T23:52:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-24T00:06:00Z2009-10-24T00:06:00Z_0_great_white_shark34.002-118.604EPSG:4326great_white shark_2009-10-24T00:06:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
3 1111MachineObservation105838_great_white_shark2009-10-26T10:53:00Z2009-10-26T10:53:00Z_0_great_white_shark34.022-118.537EPSG:4326great_white shark_2009-10-26T10:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-27T16:21:00Z2009-10-27T16:21:00Z_0_great_white_shark34.010-118.524EPSG:4326great_white shark_2009-10-27T16:21:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1313MachineObservation105838_great_white_shark2009-10-27T16:22:00Z2009-10-27T16:22:00Z_0_great_white_shark34.006-118.526EPSG:4326great_white shark_2009-10-27T16:22:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
2 1111MachineObservation105838_great_white_shark2009-10-29T11:53:00Z2009-10-29T11:53:00Z_0_great_white_shark33.989-118.504EPSG:4326great_white shark_2009-10-29T11:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-31T21:15:00Z2009-10-31T21:15:00Z_0_great_white_shark34.045-118.530EPSG:4326great_white shark_2009-10-31T21:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2009-09-23T00:00:00Z34.030-118.560HumanObservation nan1211AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-23T00:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-23T00:00:00Z 0
2009-09-25T11:09:00Z34.024-118.556MachineObservation1 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:09:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:09:00Z 1500
2009-09-25T11:11:00Z34.035-118.549MachineObservation0 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:11:00Z10000
2009-09-27T17:58:00Z34.033-118.547MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-27T17:58:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-27T17:58:00Z 1500
2009-10-08T20:24:00Z34.038-118.581MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-08T20:24:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-08T20:24:00Z 500
2009-10-15T11:05:00Z33.995-118.678MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-15T11:05:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-15T11:05:00Z10000
2009-10-17T06:11:00Z34.037-118.545MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T06:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T06:11:00Z10000
2009-10-17T09:00:00Z34.026-118.534MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T09:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T09:00:00Z 500
2009-10-17T10:38:00Z34.027-118.545MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T10:38:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T10:38:00Z 250
2009-10-18T08:48:00Z34.039-118.548MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T08:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T08:48:00Z 1500
2009-10-18T10:26:00Z34.031-118.541MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T10:26:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T10:26:00Z 500
2009-10-18T11:15:00Z34.041-118.535MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T11:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T11:15:00Z10000
2009-10-23T23:52:00Z33.999-118.612MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-23T23:52:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-23T23:52:00Z 500
2009-10-24T00:06:00Z34.002-118.604MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-24T00:06:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-24T00:06:00Z10000
2009-10-26T10:53:00Z34.022-118.537MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T10:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T10:53:00Z 250
2009-10-27T16:21:00Z34.010-118.524MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:21:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:21:00Z 1500
2009-10-27T16:22:00Z34.006-118.526MachineObservation2 1313AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:22:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:22:00Z 500
2009-10-29T11:53:00Z33.989-118.504MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-29T11:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-29T11:53:00Z 500
2009-10-31T21:15:00Z34.045-118.530MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T21:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T21:15:00Z10000
\n" ], "text/latex": [ - "A data.frame: 19 × 21\n", + "A tibble: 19 × 21\n", "\\begin{tabular}{lllllllllllllllllllll}\n", - " atn\\_tbl.location\\_class & atn\\_tbl.qartod\\_time\\_flag & atn\\_tbl.qartod\\_speed\\_flag & atn\\_tbl.qartod\\_location\\_flag & atn\\_tbl.qartod\\_rollup\\_flag & basisOfRecord & organismID & eventDate & occurrenceID & decimalLatitude & decimalLongitude & geodeticDatum & eventID & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & coordinateUncertaintyInMeters\\\\\n", - " & & & & & & & & & & & & & & & & & & & & \\\\\n", + " eventDate & decimalLatitude & decimalLongitude & basisOfRecord & location\\_class & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & organismID & occurrenceID & geodeticDatum & eventID & coordinateUncertaintyInMeters\\\\\n", + " & & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", - "\t nan & 1 & 2 & 1 & 1 & HumanObservation & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 34.030 & -118.560 & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 0 \\\\\n", - "\t 1 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & 34.024 & -118.556 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 \\\\\n", - "\t 0 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & 34.035 & -118.549 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & 34.033 & -118.547 & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & 34.038 & -118.581 & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & 33.995 & -118.678 & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & 34.037 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & 34.026 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & 34.027 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & 34.039 & -118.548 & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & 34.031 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & 34.041 & -118.535 & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & 33.999 & -118.612 & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & 34.002 & -118.604 & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & 34.022 & -118.537 & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & 34.010 & -118.524 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 \\\\\n", - "\t 2 & 1 & 3 & 1 & 3 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & 34.006 & -118.526 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & 33.989 & -118.504 & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & 34.045 & -118.530 & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500\\\\\n", + "\t 2009-09-23T00:00:00Z & 34.030 & -118.560 & HumanObservation & nan & 1 & 2 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & 0\\\\\n", + "\t 2009-09-25T11:09:00Z & 34.024 & -118.556 & MachineObservation & 1 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & 1500\\\\\n", + "\t 2009-09-25T11:11:00Z & 34.035 & -118.549 & MachineObservation & 0 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z & 10000\\\\\n", + "\t 2009-09-27T17:58:00Z & 34.033 & -118.547 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & 1500\\\\\n", + "\t 2009-10-08T20:24:00Z & 34.038 & -118.581 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & 500\\\\\n", + "\t 2009-10-15T11:05:00Z & 33.995 & -118.678 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & 10000\\\\\n", + "\t 2009-10-17T06:11:00Z & 34.037 & -118.545 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & 10000\\\\\n", + "\t 2009-10-17T09:00:00Z & 34.026 & -118.534 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & 500\\\\\n", + "\t 2009-10-17T10:38:00Z & 34.027 & -118.545 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & 250\\\\\n", + "\t 2009-10-18T08:48:00Z & 34.039 & -118.548 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & 1500\\\\\n", + "\t 2009-10-18T10:26:00Z & 34.031 & -118.541 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & 500\\\\\n", + "\t 2009-10-18T11:15:00Z & 34.041 & -118.535 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & 10000\\\\\n", + "\t 2009-10-23T23:52:00Z & 33.999 & -118.612 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & 500\\\\\n", + "\t 2009-10-24T00:06:00Z & 34.002 & -118.604 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & 10000\\\\\n", + "\t 2009-10-26T10:53:00Z & 34.022 & -118.537 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & 250\\\\\n", + "\t 2009-10-27T16:21:00Z & 34.010 & -118.524 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & 1500\\\\\n", + "\t 2009-10-27T16:22:00Z & 34.006 & -118.526 & MachineObservation & 2 & 1 & 3 & 1 & 3 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z & 500\\\\\n", + "\t 2009-10-29T11:53:00Z & 33.989 & -118.504 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & 500\\\\\n", + "\t 2009-10-31T21:15:00Z & 34.045 & -118.530 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & 10000\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A data.frame: 19 × 21\n", + "A tibble: 19 × 21\n", "\n", - "| atn_tbl.location_class <chr> | atn_tbl.qartod_time_flag <int> | atn_tbl.qartod_speed_flag <int> | atn_tbl.qartod_location_flag <int> | atn_tbl.qartod_rollup_flag <int> | basisOfRecord <chr> | organismID <chr> | eventDate <chr> | occurrenceID <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | geodeticDatum <chr> | eventID <chr> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | coordinateUncertaintyInMeters <chr> |\n", + "| eventDate <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | basisOfRecord <chr> | location_class <chr> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | organismID <chr> | occurrenceID <chr> | geodeticDatum <chr> | eventID <chr> | coordinateUncertaintyInMeters <dbl> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| nan | 1 | 2 | 1 | 1 | HumanObservation | 105838_great_white_shark | 2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 34.030 | -118.560 | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 0 |\n", - "| 1 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:09:00Z | 2009-09-25T11:09:00Z_0_great_white_shark | 34.024 | -118.556 | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 |\n", - "| 0 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:11:00Z | 2009-09-25T11:11:00Z_0_great_white_shark | 34.035 | -118.549 | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-27T17:58:00Z | 2009-09-27T17:58:00Z_0_great_white_shark | 34.033 | -118.547 | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-08T20:24:00Z | 2009-10-08T20:24:00Z_0_great_white_shark | 34.038 | -118.581 | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-15T11:05:00Z | 2009-10-15T11:05:00Z_0_great_white_shark | 33.995 | -118.678 | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T06:11:00Z | 2009-10-17T06:11:00Z_0_great_white_shark | 34.037 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T09:00:00Z | 2009-10-17T09:00:00Z_0_great_white_shark | 34.026 | -118.534 | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T10:38:00Z | 2009-10-17T10:38:00Z_0_great_white_shark | 34.027 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T08:48:00Z | 2009-10-18T08:48:00Z_0_great_white_shark | 34.039 | -118.548 | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T10:26:00Z | 2009-10-18T10:26:00Z_0_great_white_shark | 34.031 | -118.541 | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T11:15:00Z | 2009-10-18T11:15:00Z_0_great_white_shark | 34.041 | -118.535 | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-23T23:52:00Z | 2009-10-23T23:52:00Z_0_great_white_shark | 33.999 | -118.612 | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-24T00:06:00Z | 2009-10-24T00:06:00Z_0_great_white_shark | 34.002 | -118.604 | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T10:53:00Z | 2009-10-26T10:53:00Z_0_great_white_shark | 34.022 | -118.537 | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:21:00Z | 2009-10-27T16:21:00Z_0_great_white_shark | 34.010 | -118.524 | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 |\n", - "| 2 | 1 | 3 | 1 | 3 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:22:00Z | 2009-10-27T16:22:00Z_0_great_white_shark | 34.006 | -118.526 | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-29T11:53:00Z | 2009-10-29T11:53:00Z_0_great_white_shark | 33.989 | -118.504 | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T21:15:00Z | 2009-10-31T21:15:00Z_0_great_white_shark | 34.045 | -118.530 | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 |\n", + "| 2009-09-23T00:00:00Z | 34.030 | -118.560 | HumanObservation | nan | 1 | 2 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-23T00:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | 0 |\n", + "| 2009-09-25T11:09:00Z | 34.024 | -118.556 | MachineObservation | 1 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:09:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | 1500 |\n", + "| 2009-09-25T11:11:00Z | 34.035 | -118.549 | MachineObservation | 0 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z | 10000 |\n", + "| 2009-09-27T17:58:00Z | 34.033 | -118.547 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-27T17:58:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | 1500 |\n", + "| 2009-10-08T20:24:00Z | 34.038 | -118.581 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-08T20:24:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | 500 |\n", + "| 2009-10-15T11:05:00Z | 33.995 | -118.678 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-15T11:05:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | 10000 |\n", + "| 2009-10-17T06:11:00Z | 34.037 | -118.545 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T06:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | 10000 |\n", + "| 2009-10-17T09:00:00Z | 34.026 | -118.534 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T09:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | 500 |\n", + "| 2009-10-17T10:38:00Z | 34.027 | -118.545 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T10:38:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | 250 |\n", + "| 2009-10-18T08:48:00Z | 34.039 | -118.548 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T08:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | 1500 |\n", + "| 2009-10-18T10:26:00Z | 34.031 | -118.541 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T10:26:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | 500 |\n", + "| 2009-10-18T11:15:00Z | 34.041 | -118.535 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T11:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | 10000 |\n", + "| 2009-10-23T23:52:00Z | 33.999 | -118.612 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-23T23:52:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | 500 |\n", + "| 2009-10-24T00:06:00Z | 34.002 | -118.604 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-24T00:06:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | 10000 |\n", + "| 2009-10-26T10:53:00Z | 34.022 | -118.537 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T10:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | 250 |\n", + "| 2009-10-27T16:21:00Z | 34.010 | -118.524 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:21:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | 1500 |\n", + "| 2009-10-27T16:22:00Z | 34.006 | -118.526 | MachineObservation | 2 | 1 | 3 | 1 | 3 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:22:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z | 500 |\n", + "| 2009-10-29T11:53:00Z | 33.989 | -118.504 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-29T11:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | 500 |\n", + "| 2009-10-31T21:15:00Z | 34.045 | -118.530 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T21:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | 10000 |\n", "\n" ], "text/plain": [ - " atn_tbl.location_class atn_tbl.qartod_time_flag atn_tbl.qartod_speed_flag\n", - "1 nan 1 2 \n", - "2 1 1 4 \n", - "3 0 1 4 \n", - "4 1 1 1 \n", - "5 2 1 1 \n", - "6 0 1 1 \n", - "7 0 1 1 \n", - "8 2 1 1 \n", - "9 3 1 1 \n", - "10 1 1 1 \n", - "11 2 1 1 \n", - "12 0 1 1 \n", - "13 2 1 1 \n", - "14 0 1 1 \n", - "15 3 1 1 \n", - "16 1 1 1 \n", - "17 2 1 3 \n", - "18 2 1 1 \n", - "19 0 1 1 \n", - " atn_tbl.qartod_location_flag atn_tbl.qartod_rollup_flag basisOfRecord \n", - "1 1 1 HumanObservation \n", - "2 1 4 MachineObservation\n", - "3 1 4 MachineObservation\n", - "4 1 1 MachineObservation\n", - "5 1 1 MachineObservation\n", - "6 1 1 MachineObservation\n", - "7 1 1 MachineObservation\n", - "8 1 1 MachineObservation\n", - "9 1 1 MachineObservation\n", - "10 1 1 MachineObservation\n", - "11 1 1 MachineObservation\n", - "12 1 1 MachineObservation\n", - "13 1 1 MachineObservation\n", - "14 1 1 MachineObservation\n", - "15 1 1 MachineObservation\n", - "16 1 1 MachineObservation\n", - "17 1 3 MachineObservation\n", - "18 1 1 MachineObservation\n", - "19 1 1 MachineObservation\n", - " organismID eventDate \n", - "1 105838_great_white_shark 2009-09-23T00:00:00Z\n", - "2 105838_great_white_shark 2009-09-25T11:09:00Z\n", - "3 105838_great_white_shark 2009-09-25T11:11:00Z\n", - "4 105838_great_white_shark 2009-09-27T17:58:00Z\n", - "5 105838_great_white_shark 2009-10-08T20:24:00Z\n", - "6 105838_great_white_shark 2009-10-15T11:05:00Z\n", - "7 105838_great_white_shark 2009-10-17T06:11:00Z\n", - "8 105838_great_white_shark 2009-10-17T09:00:00Z\n", - "9 105838_great_white_shark 2009-10-17T10:38:00Z\n", - "10 105838_great_white_shark 2009-10-18T08:48:00Z\n", - "11 105838_great_white_shark 2009-10-18T10:26:00Z\n", - "12 105838_great_white_shark 2009-10-18T11:15:00Z\n", - "13 105838_great_white_shark 2009-10-23T23:52:00Z\n", - "14 105838_great_white_shark 2009-10-24T00:06:00Z\n", - "15 105838_great_white_shark 2009-10-26T10:53:00Z\n", - "16 105838_great_white_shark 2009-10-27T16:21:00Z\n", - "17 105838_great_white_shark 2009-10-27T16:22:00Z\n", - "18 105838_great_white_shark 2009-10-29T11:53:00Z\n", - "19 105838_great_white_shark 2009-10-31T21:15:00Z\n", - " occurrenceID decimalLatitude decimalLongitude\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 34.030 -118.560 \n", - "2 2009-09-25T11:09:00Z_0_great_white_shark 34.024 -118.556 \n", - "3 2009-09-25T11:11:00Z_0_great_white_shark 34.035 -118.549 \n", - "4 2009-09-27T17:58:00Z_0_great_white_shark 34.033 -118.547 \n", - "5 2009-10-08T20:24:00Z_0_great_white_shark 34.038 -118.581 \n", - "6 2009-10-15T11:05:00Z_0_great_white_shark 33.995 -118.678 \n", - "7 2009-10-17T06:11:00Z_0_great_white_shark 34.037 -118.545 \n", - "8 2009-10-17T09:00:00Z_0_great_white_shark 34.026 -118.534 \n", - "9 2009-10-17T10:38:00Z_0_great_white_shark 34.027 -118.545 \n", - "10 2009-10-18T08:48:00Z_0_great_white_shark 34.039 -118.548 \n", - "11 2009-10-18T10:26:00Z_0_great_white_shark 34.031 -118.541 \n", - "12 2009-10-18T11:15:00Z_0_great_white_shark 34.041 -118.535 \n", - "13 2009-10-23T23:52:00Z_0_great_white_shark 33.999 -118.612 \n", - "14 2009-10-24T00:06:00Z_0_great_white_shark 34.002 -118.604 \n", - "15 2009-10-26T10:53:00Z_0_great_white_shark 34.022 -118.537 \n", - "16 2009-10-27T16:21:00Z_0_great_white_shark 34.010 -118.524 \n", - "17 2009-10-27T16:22:00Z_0_great_white_shark 34.006 -118.526 \n", - "18 2009-10-29T11:53:00Z_0_great_white_shark 33.989 -118.504 \n", - "19 2009-10-31T21:15:00Z_0_great_white_shark 34.045 -118.530 \n", - " geodeticDatum eventID kingdom taxonRank\n", - "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z Animalia Species \n", - "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z Animalia Species \n", - "3 EPSG:4326 great_white shark_2009-09-25T11:11:00Z Animalia Species \n", - "4 EPSG:4326 great_white shark_2009-09-27T17:58:00Z Animalia Species \n", - "5 EPSG:4326 great_white shark_2009-10-08T20:24:00Z Animalia Species \n", - "6 EPSG:4326 great_white shark_2009-10-15T11:05:00Z Animalia Species \n", - "7 EPSG:4326 great_white shark_2009-10-17T06:11:00Z Animalia Species \n", - "8 EPSG:4326 great_white shark_2009-10-17T09:00:00Z Animalia Species \n", - "9 EPSG:4326 great_white shark_2009-10-17T10:38:00Z Animalia Species \n", - "10 EPSG:4326 great_white shark_2009-10-18T08:48:00Z Animalia Species \n", - "11 EPSG:4326 great_white shark_2009-10-18T10:26:00Z Animalia Species \n", - "12 EPSG:4326 great_white shark_2009-10-18T11:15:00Z Animalia Species \n", - "13 EPSG:4326 great_white shark_2009-10-23T23:52:00Z Animalia Species \n", - "14 EPSG:4326 great_white shark_2009-10-24T00:06:00Z Animalia Species \n", - "15 EPSG:4326 great_white shark_2009-10-26T10:53:00Z Animalia Species \n", - "16 EPSG:4326 great_white shark_2009-10-27T16:21:00Z Animalia Species \n", - "17 EPSG:4326 great_white shark_2009-10-27T16:22:00Z Animalia Species \n", - "18 EPSG:4326 great_white shark_2009-10-29T11:53:00Z Animalia Species \n", - "19 EPSG:4326 great_white shark_2009-10-31T21:15:00Z Animalia Species \n", - " occurrenceStatus sex lifeStage scientificName \n", - "1 present male juvenile Carcharodon carcharias\n", - "2 present male juvenile Carcharodon carcharias\n", - "3 present male juvenile Carcharodon carcharias\n", - "4 present male juvenile Carcharodon carcharias\n", - "5 present male juvenile Carcharodon carcharias\n", - "6 present male juvenile Carcharodon carcharias\n", - "7 present male juvenile Carcharodon carcharias\n", - "8 present male juvenile Carcharodon carcharias\n", - "9 present male juvenile Carcharodon carcharias\n", - "10 present male juvenile Carcharodon carcharias\n", - "11 present male juvenile Carcharodon carcharias\n", - "12 present male juvenile Carcharodon carcharias\n", - "13 present male juvenile Carcharodon carcharias\n", - "14 present male juvenile Carcharodon carcharias\n", - "15 present male juvenile Carcharodon carcharias\n", - "16 present male juvenile Carcharodon carcharias\n", - "17 present male juvenile Carcharodon carcharias\n", - "18 present male juvenile Carcharodon carcharias\n", - "19 present male juvenile Carcharodon carcharias\n", - " scientificNameID coordinateUncertaintyInMeters\n", - "1 urn:lsid:marinespecies.org:taxname:105838 0 \n", - "2 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "3 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "4 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "5 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "6 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "7 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "8 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "9 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "10 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "11 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "12 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "13 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "14 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "15 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "16 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "17 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "18 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "19 urn:lsid:marinespecies.org:taxname:105838 >1500 " + " eventDate decimalLatitude decimalLongitude basisOfRecord \n", + "1 2009-09-23T00:00:00Z 34.030 -118.560 HumanObservation \n", + "2 2009-09-25T11:09:00Z 34.024 -118.556 MachineObservation\n", + "3 2009-09-25T11:11:00Z 34.035 -118.549 MachineObservation\n", + "4 2009-09-27T17:58:00Z 34.033 -118.547 MachineObservation\n", + "5 2009-10-08T20:24:00Z 34.038 -118.581 MachineObservation\n", + "6 2009-10-15T11:05:00Z 33.995 -118.678 MachineObservation\n", + "7 2009-10-17T06:11:00Z 34.037 -118.545 MachineObservation\n", + "8 2009-10-17T09:00:00Z 34.026 -118.534 MachineObservation\n", + "9 2009-10-17T10:38:00Z 34.027 -118.545 MachineObservation\n", + "10 2009-10-18T08:48:00Z 34.039 -118.548 MachineObservation\n", + "11 2009-10-18T10:26:00Z 34.031 -118.541 MachineObservation\n", + "12 2009-10-18T11:15:00Z 34.041 -118.535 MachineObservation\n", + "13 2009-10-23T23:52:00Z 33.999 -118.612 MachineObservation\n", + "14 2009-10-24T00:06:00Z 34.002 -118.604 MachineObservation\n", + "15 2009-10-26T10:53:00Z 34.022 -118.537 MachineObservation\n", + "16 2009-10-27T16:21:00Z 34.010 -118.524 MachineObservation\n", + "17 2009-10-27T16:22:00Z 34.006 -118.526 MachineObservation\n", + "18 2009-10-29T11:53:00Z 33.989 -118.504 MachineObservation\n", + "19 2009-10-31T21:15:00Z 34.045 -118.530 MachineObservation\n", + " location_class qartod_time_flag qartod_speed_flag qartod_location_flag\n", + "1 nan 1 2 1 \n", + "2 1 1 4 1 \n", + "3 0 1 4 1 \n", + "4 1 1 1 1 \n", + "5 2 1 1 1 \n", + "6 0 1 1 1 \n", + "7 0 1 1 1 \n", + "8 2 1 1 1 \n", + "9 3 1 1 1 \n", + "10 1 1 1 1 \n", + "11 2 1 1 1 \n", + "12 0 1 1 1 \n", + "13 2 1 1 1 \n", + "14 0 1 1 1 \n", + "15 3 1 1 1 \n", + "16 1 1 1 1 \n", + "17 2 1 3 1 \n", + "18 2 1 1 1 \n", + "19 0 1 1 1 \n", + " qartod_rollup_flag kingdom taxonRank occurrenceStatus sex lifeStage\n", + "1 1 Animalia Species present male juvenile \n", + "2 4 Animalia Species present male juvenile \n", + "3 4 Animalia Species present male juvenile \n", + "4 1 Animalia Species present male juvenile \n", + "5 1 Animalia Species present male juvenile \n", + "6 1 Animalia Species present male juvenile \n", + "7 1 Animalia Species present male juvenile \n", + "8 1 Animalia Species present male juvenile \n", + "9 1 Animalia Species present male juvenile \n", + "10 1 Animalia Species present male juvenile \n", + "11 1 Animalia Species present male juvenile \n", + "12 1 Animalia Species present male juvenile \n", + "13 1 Animalia Species present male juvenile \n", + "14 1 Animalia Species present male juvenile \n", + "15 1 Animalia Species present male juvenile \n", + "16 1 Animalia Species present male juvenile \n", + "17 3 Animalia Species present male juvenile \n", + "18 1 Animalia Species present male juvenile \n", + "19 1 Animalia Species present male juvenile \n", + " scientificName scientificNameID \n", + "1 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "2 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "3 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "4 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "5 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "6 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "7 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "8 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "9 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "10 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "11 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "12 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "13 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "14 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "15 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "16 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "17 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "18 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "19 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + " organismID occurrenceID \n", + "1 105838_great_white_shark 2009-09-23T00:00:00Z_0_great_white_shark\n", + "2 105838_great_white_shark 2009-09-25T11:09:00Z_0_great_white_shark\n", + "3 105838_great_white_shark 2009-09-25T11:11:00Z_0_great_white_shark\n", + "4 105838_great_white_shark 2009-09-27T17:58:00Z_0_great_white_shark\n", + "5 105838_great_white_shark 2009-10-08T20:24:00Z_0_great_white_shark\n", + "6 105838_great_white_shark 2009-10-15T11:05:00Z_0_great_white_shark\n", + "7 105838_great_white_shark 2009-10-17T06:11:00Z_0_great_white_shark\n", + "8 105838_great_white_shark 2009-10-17T09:00:00Z_0_great_white_shark\n", + "9 105838_great_white_shark 2009-10-17T10:38:00Z_0_great_white_shark\n", + "10 105838_great_white_shark 2009-10-18T08:48:00Z_0_great_white_shark\n", + "11 105838_great_white_shark 2009-10-18T10:26:00Z_0_great_white_shark\n", + "12 105838_great_white_shark 2009-10-18T11:15:00Z_0_great_white_shark\n", + "13 105838_great_white_shark 2009-10-23T23:52:00Z_0_great_white_shark\n", + "14 105838_great_white_shark 2009-10-24T00:06:00Z_0_great_white_shark\n", + "15 105838_great_white_shark 2009-10-26T10:53:00Z_0_great_white_shark\n", + "16 105838_great_white_shark 2009-10-27T16:21:00Z_0_great_white_shark\n", + "17 105838_great_white_shark 2009-10-27T16:22:00Z_0_great_white_shark\n", + "18 105838_great_white_shark 2009-10-29T11:53:00Z_0_great_white_shark\n", + "19 105838_great_white_shark 2009-10-31T21:15:00Z_0_great_white_shark\n", + " geodeticDatum eventID \n", + "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z\n", + "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z\n", + "3 EPSG:4326 great_white shark_2009-09-25T11:11:00Z\n", + "4 EPSG:4326 great_white shark_2009-09-27T17:58:00Z\n", + "5 EPSG:4326 great_white shark_2009-10-08T20:24:00Z\n", + "6 EPSG:4326 great_white shark_2009-10-15T11:05:00Z\n", + "7 EPSG:4326 great_white shark_2009-10-17T06:11:00Z\n", + "8 EPSG:4326 great_white shark_2009-10-17T09:00:00Z\n", + "9 EPSG:4326 great_white shark_2009-10-17T10:38:00Z\n", + "10 EPSG:4326 great_white shark_2009-10-18T08:48:00Z\n", + "11 EPSG:4326 great_white shark_2009-10-18T10:26:00Z\n", + "12 EPSG:4326 great_white shark_2009-10-18T11:15:00Z\n", + "13 EPSG:4326 great_white shark_2009-10-23T23:52:00Z\n", + "14 EPSG:4326 great_white shark_2009-10-24T00:06:00Z\n", + "15 EPSG:4326 great_white shark_2009-10-26T10:53:00Z\n", + "16 EPSG:4326 great_white shark_2009-10-27T16:21:00Z\n", + "17 EPSG:4326 great_white shark_2009-10-27T16:22:00Z\n", + "18 EPSG:4326 great_white shark_2009-10-29T11:53:00Z\n", + "19 EPSG:4326 great_white shark_2009-10-31T21:15:00Z\n", + " coordinateUncertaintyInMeters\n", + "1 0 \n", + "2 1500 \n", + "3 10000 \n", + "4 1500 \n", + "5 500 \n", + "6 10000 \n", + "7 10000 \n", + "8 500 \n", + "9 250 \n", + "10 1500 \n", + "11 500 \n", + "12 10000 \n", + "13 500 \n", + "14 10000 \n", + "15 250 \n", + "16 1500 \n", + "17 500 \n", + "18 500 \n", + "19 10000 " ] }, "metadata": {}, @@ -4372,15 +4134,28 @@ } ], "source": [ - "lut_uncert <- data.frame(\n", - " atn_tbl.location_class = c('nan','G','3','2','1','0'),\n", - " coordinateUncertaintyInMeters=c(0,100,250,500,1500,'>1500')\n", - ")\n", - "\n", - "occurrencedf <- merge(occurrencedf,lut_uncert,by=\"atn_tbl.location_class\")\n", + "#lut_uncert <- data.frame(\n", + "# atn_tbl.location_class = c('nan','G','3','2','1','0'),\n", + "# #coordinateUncertaintyInMeters=c(0,100,250,500,1500,'>1500') #Based off of Jon Pye's suggestions, changing this to 10K\n", + "# coordinateUncertaintyInMeters=c(0,100,250,500,1500,10000)\n", + "#)\n", "\n", "# sort table by increasing date\n", - "occurrencedf <- occurrencedf %>% arrange(eventDate)\n", + "# occurrencedf <- occurrencedf %>% arrange(eventDate)\n", + "\n", + "# Not necessarily better, but I like the case_when approach. I think it's more readable.\n", + "occurrencedf <- occurrencedf %>%\n", + " filter(location_class %in% c('nan','G','3','2','1','0')) %>%\n", + " mutate( # This returns NA for any other values than those defined below\n", + " coordinateUncertaintyInMeters = case_when(location_class == 'nan' ~ 0,\n", + " location_class == 'G' ~ 200,\n", + " location_class == '3' ~ 250,\n", + " location_class == '2' ~ 500,\n", + " location_class == '1' ~ 1500,\n", + " location_class == '0' ~ 1e4)\n", + " ) %>% \n", + " arrange(eventDate) # arrange by increasing date\n", + "\n", "\n", "occurrencedf" ] @@ -4407,256 +4182,236 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 36, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", "\n", "
A data.frame: 19 × 23A tibble: 19 × 23
atn_tbl.location_classatn_tbl.qartod_time_flagatn_tbl.qartod_speed_flagatn_tbl.qartod_location_flagatn_tbl.qartod_rollup_flagbasisOfRecordorganismIDeventDateoccurrenceIDdecimalLatitudedecimalLongitudegeodeticDatumeventIDkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDcoordinateUncertaintyInMeterseventDateHrsdataGeneralizations
<chr><int><int><int><int><chr><chr><chr><chr><dbl><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
eventDatedecimalLatitudedecimalLongitudebasisOfRecordlocation_classqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDorganismIDoccurrenceIDgeodeticDatumeventIDcoordinateUncertaintyInMeterseventDateHrsdataGeneralizations
<chr><dbl><dbl><chr><chr><int><int><int><int><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><dbl><chr><chr>
nan1211HumanObservation 105838_great_white_shark2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark34.030-118.560EPSG:4326great_white shark_2009-09-23T00:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058380 2009-09-23T00
1 1414MachineObservation105838_great_white_shark2009-09-25T11:09:00Z2009-09-25T11:09:00Z_0_great_white_shark34.024-118.556EPSG:4326great_white shark_2009-09-25T11:09:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 2009-09-25T11first of 2 records
0 1414MachineObservation105838_great_white_shark2009-09-25T11:11:00Z2009-09-25T11:11:00Z_0_great_white_shark34.035-118.549EPSG:4326great_white shark_2009-09-25T11:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-09-25T11first of 2 records
1 1111MachineObservation105838_great_white_shark2009-09-27T17:58:00Z2009-09-27T17:58:00Z_0_great_white_shark34.033-118.547EPSG:4326great_white shark_2009-09-27T17:58:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 2009-09-27T17
2 1111MachineObservation105838_great_white_shark2009-10-08T20:24:00Z2009-10-08T20:24:00Z_0_great_white_shark34.038-118.581EPSG:4326great_white shark_2009-10-08T20:24:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-08T20
0 1111MachineObservation105838_great_white_shark2009-10-15T11:05:00Z2009-10-15T11:05:00Z_0_great_white_shark33.995-118.678EPSG:4326great_white shark_2009-10-15T11:05:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-10-15T11
0 1111MachineObservation105838_great_white_shark2009-10-17T06:11:00Z2009-10-17T06:11:00Z_0_great_white_shark34.037-118.545EPSG:4326great_white shark_2009-10-17T06:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-10-17T06
2 1111MachineObservation105838_great_white_shark2009-10-17T09:00:00Z2009-10-17T09:00:00Z_0_great_white_shark34.026-118.534EPSG:4326great_white shark_2009-10-17T09:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-17T09
3 1111MachineObservation105838_great_white_shark2009-10-17T10:38:00Z2009-10-17T10:38:00Z_0_great_white_shark34.027-118.545EPSG:4326great_white shark_2009-10-17T10:38:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250 2009-10-17T10
1 1111MachineObservation105838_great_white_shark2009-10-18T08:48:00Z2009-10-18T08:48:00Z_0_great_white_shark34.039-118.548EPSG:4326great_white shark_2009-10-18T08:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 2009-10-18T08
2 1111MachineObservation105838_great_white_shark2009-10-18T10:26:00Z2009-10-18T10:26:00Z_0_great_white_shark34.031-118.541EPSG:4326great_white shark_2009-10-18T10:26:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-18T10
0 1111MachineObservation105838_great_white_shark2009-10-18T11:15:00Z2009-10-18T11:15:00Z_0_great_white_shark34.041-118.535EPSG:4326great_white shark_2009-10-18T11:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-10-18T11
2 1111MachineObservation105838_great_white_shark2009-10-23T23:52:00Z2009-10-23T23:52:00Z_0_great_white_shark33.999-118.612EPSG:4326great_white shark_2009-10-23T23:52:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-23T23
0 1111MachineObservation105838_great_white_shark2009-10-24T00:06:00Z2009-10-24T00:06:00Z_0_great_white_shark34.002-118.604EPSG:4326great_white shark_2009-10-24T00:06:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-10-24T00
3 1111MachineObservation105838_great_white_shark2009-10-26T10:53:00Z2009-10-26T10:53:00Z_0_great_white_shark34.022-118.537EPSG:4326great_white shark_2009-10-26T10:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250 2009-10-26T10
1 1111MachineObservation105838_great_white_shark2009-10-27T16:21:00Z2009-10-27T16:21:00Z_0_great_white_shark34.010-118.524EPSG:4326great_white shark_2009-10-27T16:21:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 2009-10-27T16first of 2 records
2 1313MachineObservation105838_great_white_shark2009-10-27T16:22:00Z2009-10-27T16:22:00Z_0_great_white_shark34.006-118.526EPSG:4326great_white shark_2009-10-27T16:22:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-27T16first of 2 records
2 1111MachineObservation105838_great_white_shark2009-10-29T11:53:00Z2009-10-29T11:53:00Z_0_great_white_shark33.989-118.504EPSG:4326great_white shark_2009-10-29T11:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500 2009-10-29T11
0 1111MachineObservation105838_great_white_shark2009-10-31T21:15:00Z2009-10-31T21:15:00Z_0_great_white_shark34.045-118.530EPSG:4326great_white shark_2009-10-31T21:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>15002009-10-31T21
2009-09-23T00:00:00Z34.030-118.560HumanObservation nan1211AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-23T00:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-23T00:00:00Z 02009-09-23T00
2009-09-25T11:09:00Z34.024-118.556MachineObservation1 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:09:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:09:00Z 15002009-09-25T11first of 2 records
2009-09-25T11:11:00Z34.035-118.549MachineObservation0 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:11:00Z100002009-09-25T11first of 2 records
2009-09-27T17:58:00Z34.033-118.547MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-27T17:58:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-27T17:58:00Z 15002009-09-27T17
2009-10-08T20:24:00Z34.038-118.581MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-08T20:24:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-08T20:24:00Z 5002009-10-08T20
2009-10-15T11:05:00Z33.995-118.678MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-15T11:05:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-15T11:05:00Z100002009-10-15T11
2009-10-17T06:11:00Z34.037-118.545MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T06:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T06:11:00Z100002009-10-17T06
2009-10-17T09:00:00Z34.026-118.534MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T09:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T09:00:00Z 5002009-10-17T09
2009-10-17T10:38:00Z34.027-118.545MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T10:38:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T10:38:00Z 2502009-10-17T10
2009-10-18T08:48:00Z34.039-118.548MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T08:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T08:48:00Z 15002009-10-18T08
2009-10-18T10:26:00Z34.031-118.541MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T10:26:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T10:26:00Z 5002009-10-18T10
2009-10-18T11:15:00Z34.041-118.535MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T11:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T11:15:00Z100002009-10-18T11
2009-10-23T23:52:00Z33.999-118.612MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-23T23:52:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-23T23:52:00Z 5002009-10-23T23
2009-10-24T00:06:00Z34.002-118.604MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-24T00:06:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-24T00:06:00Z100002009-10-24T00
2009-10-26T10:53:00Z34.022-118.537MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T10:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T10:53:00Z 2502009-10-26T10
2009-10-27T16:21:00Z34.010-118.524MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:21:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:21:00Z 15002009-10-27T16first of 2 records
2009-10-27T16:22:00Z34.006-118.526MachineObservation2 1313AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:22:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:22:00Z 5002009-10-27T16first of 2 records
2009-10-29T11:53:00Z33.989-118.504MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-29T11:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-29T11:53:00Z 5002009-10-29T11
2009-10-31T21:15:00Z34.045-118.530MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T21:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T21:15:00Z100002009-10-31T21
\n" ], "text/latex": [ - "A data.frame: 19 × 23\n", + "A tibble: 19 × 23\n", "\\begin{tabular}{lllllllllllllllllllllll}\n", - " atn\\_tbl.location\\_class & atn\\_tbl.qartod\\_time\\_flag & atn\\_tbl.qartod\\_speed\\_flag & atn\\_tbl.qartod\\_location\\_flag & atn\\_tbl.qartod\\_rollup\\_flag & basisOfRecord & organismID & eventDate & occurrenceID & decimalLatitude & decimalLongitude & geodeticDatum & eventID & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & coordinateUncertaintyInMeters & eventDateHrs & dataGeneralizations\\\\\n", - " & & & & & & & & & & & & & & & & & & & & & & \\\\\n", + " eventDate & decimalLatitude & decimalLongitude & basisOfRecord & location\\_class & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & organismID & occurrenceID & geodeticDatum & eventID & coordinateUncertaintyInMeters & eventDateHrs & dataGeneralizations\\\\\n", + " & & & & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", - "\t nan & 1 & 2 & 1 & 1 & HumanObservation & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 34.030 & -118.560 & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 0 & 2009-09-23T00 & \\\\\n", - "\t 1 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & 34.024 & -118.556 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & 2009-09-25T11 & first of 2 records\\\\\n", - "\t 0 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & 34.035 & -118.549 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-09-25T11 & first of 2 records\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & 34.033 & -118.547 & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & 2009-09-27T17 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & 34.038 & -118.581 & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-08T20 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & 33.995 & -118.678 & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-10-15T11 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & 34.037 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-10-17T06 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & 34.026 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-17T09 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & 34.027 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & 2009-10-17T10 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & 34.039 & -118.548 & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & 2009-10-18T08 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & 34.031 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-18T10 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & 34.041 & -118.535 & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-10-18T11 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & 33.999 & -118.612 & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-23T23 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & 34.002 & -118.604 & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-10-24T00 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & 34.022 & -118.537 & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & 2009-10-26T10 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & 34.010 & -118.524 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & 2009-10-27T16 & first of 2 records\\\\\n", - "\t 2 & 1 & 3 & 1 & 3 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & 34.006 & -118.526 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-27T16 & first of 2 records\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & 33.989 & -118.504 & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & 2009-10-29T11 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & 34.045 & -118.530 & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & 2009-10-31T21 & \\\\\n", + "\t 2009-09-23T00:00:00Z & 34.030 & -118.560 & HumanObservation & nan & 1 & 2 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & 0 & 2009-09-23T00 & \\\\\n", + "\t 2009-09-25T11:09:00Z & 34.024 & -118.556 & MachineObservation & 1 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & 1500 & 2009-09-25T11 & first of 2 records\\\\\n", + "\t 2009-09-25T11:11:00Z & 34.035 & -118.549 & MachineObservation & 0 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:11:00Z & 10000 & 2009-09-25T11 & first of 2 records\\\\\n", + "\t 2009-09-27T17:58:00Z & 34.033 & -118.547 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & 1500 & 2009-09-27T17 & \\\\\n", + "\t 2009-10-08T20:24:00Z & 34.038 & -118.581 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & 500 & 2009-10-08T20 & \\\\\n", + "\t 2009-10-15T11:05:00Z & 33.995 & -118.678 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & 10000 & 2009-10-15T11 & \\\\\n", + "\t 2009-10-17T06:11:00Z & 34.037 & -118.545 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & 10000 & 2009-10-17T06 & \\\\\n", + "\t 2009-10-17T09:00:00Z & 34.026 & -118.534 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & 500 & 2009-10-17T09 & \\\\\n", + "\t 2009-10-17T10:38:00Z & 34.027 & -118.545 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & 250 & 2009-10-17T10 & \\\\\n", + "\t 2009-10-18T08:48:00Z & 34.039 & -118.548 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & 1500 & 2009-10-18T08 & \\\\\n", + "\t 2009-10-18T10:26:00Z & 34.031 & -118.541 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & 500 & 2009-10-18T10 & \\\\\n", + "\t 2009-10-18T11:15:00Z & 34.041 & -118.535 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & 10000 & 2009-10-18T11 & \\\\\n", + "\t 2009-10-23T23:52:00Z & 33.999 & -118.612 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & 500 & 2009-10-23T23 & \\\\\n", + "\t 2009-10-24T00:06:00Z & 34.002 & -118.604 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & 10000 & 2009-10-24T00 & \\\\\n", + "\t 2009-10-26T10:53:00Z & 34.022 & -118.537 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & 250 & 2009-10-26T10 & \\\\\n", + "\t 2009-10-27T16:21:00Z & 34.010 & -118.524 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & 1500 & 2009-10-27T16 & first of 2 records\\\\\n", + "\t 2009-10-27T16:22:00Z & 34.006 & -118.526 & MachineObservation & 2 & 1 & 3 & 1 & 3 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:22:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:22:00Z & 500 & 2009-10-27T16 & first of 2 records\\\\\n", + "\t 2009-10-29T11:53:00Z & 33.989 & -118.504 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & 500 & 2009-10-29T11 & \\\\\n", + "\t 2009-10-31T21:15:00Z & 34.045 & -118.530 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & 10000 & 2009-10-31T21 & \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A data.frame: 19 × 23\n", + "A tibble: 19 × 23\n", "\n", - "| atn_tbl.location_class <chr> | atn_tbl.qartod_time_flag <int> | atn_tbl.qartod_speed_flag <int> | atn_tbl.qartod_location_flag <int> | atn_tbl.qartod_rollup_flag <int> | basisOfRecord <chr> | organismID <chr> | eventDate <chr> | occurrenceID <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | geodeticDatum <chr> | eventID <chr> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | coordinateUncertaintyInMeters <chr> | eventDateHrs <chr> | dataGeneralizations <chr> |\n", + "| eventDate <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | basisOfRecord <chr> | location_class <chr> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | organismID <chr> | occurrenceID <chr> | geodeticDatum <chr> | eventID <chr> | coordinateUncertaintyInMeters <dbl> | eventDateHrs <chr> | dataGeneralizations <chr> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| nan | 1 | 2 | 1 | 1 | HumanObservation | 105838_great_white_shark | 2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 34.030 | -118.560 | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 0 | 2009-09-23T00 | |\n", - "| 1 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:09:00Z | 2009-09-25T11:09:00Z_0_great_white_shark | 34.024 | -118.556 | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | 2009-09-25T11 | first of 2 records |\n", - "| 0 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:11:00Z | 2009-09-25T11:11:00Z_0_great_white_shark | 34.035 | -118.549 | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-09-25T11 | first of 2 records |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-27T17:58:00Z | 2009-09-27T17:58:00Z_0_great_white_shark | 34.033 | -118.547 | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | 2009-09-27T17 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-08T20:24:00Z | 2009-10-08T20:24:00Z_0_great_white_shark | 34.038 | -118.581 | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-08T20 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-15T11:05:00Z | 2009-10-15T11:05:00Z_0_great_white_shark | 33.995 | -118.678 | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-10-15T11 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T06:11:00Z | 2009-10-17T06:11:00Z_0_great_white_shark | 34.037 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-10-17T06 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T09:00:00Z | 2009-10-17T09:00:00Z_0_great_white_shark | 34.026 | -118.534 | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-17T09 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T10:38:00Z | 2009-10-17T10:38:00Z_0_great_white_shark | 34.027 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | 2009-10-17T10 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T08:48:00Z | 2009-10-18T08:48:00Z_0_great_white_shark | 34.039 | -118.548 | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | 2009-10-18T08 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T10:26:00Z | 2009-10-18T10:26:00Z_0_great_white_shark | 34.031 | -118.541 | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-18T10 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T11:15:00Z | 2009-10-18T11:15:00Z_0_great_white_shark | 34.041 | -118.535 | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-10-18T11 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-23T23:52:00Z | 2009-10-23T23:52:00Z_0_great_white_shark | 33.999 | -118.612 | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-23T23 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-24T00:06:00Z | 2009-10-24T00:06:00Z_0_great_white_shark | 34.002 | -118.604 | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-10-24T00 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T10:53:00Z | 2009-10-26T10:53:00Z_0_great_white_shark | 34.022 | -118.537 | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | 2009-10-26T10 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:21:00Z | 2009-10-27T16:21:00Z_0_great_white_shark | 34.010 | -118.524 | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | 2009-10-27T16 | first of 2 records |\n", - "| 2 | 1 | 3 | 1 | 3 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:22:00Z | 2009-10-27T16:22:00Z_0_great_white_shark | 34.006 | -118.526 | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-27T16 | first of 2 records |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-29T11:53:00Z | 2009-10-29T11:53:00Z_0_great_white_shark | 33.989 | -118.504 | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | 2009-10-29T11 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T21:15:00Z | 2009-10-31T21:15:00Z_0_great_white_shark | 34.045 | -118.530 | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | 2009-10-31T21 | |\n", + "| 2009-09-23T00:00:00Z | 34.030 | -118.560 | HumanObservation | nan | 1 | 2 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-23T00:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | 0 | 2009-09-23T00 | |\n", + "| 2009-09-25T11:09:00Z | 34.024 | -118.556 | MachineObservation | 1 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:09:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | 1500 | 2009-09-25T11 | first of 2 records |\n", + "| 2009-09-25T11:11:00Z | 34.035 | -118.549 | MachineObservation | 0 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:11:00Z | 10000 | 2009-09-25T11 | first of 2 records |\n", + "| 2009-09-27T17:58:00Z | 34.033 | -118.547 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-27T17:58:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | 1500 | 2009-09-27T17 | |\n", + "| 2009-10-08T20:24:00Z | 34.038 | -118.581 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-08T20:24:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | 500 | 2009-10-08T20 | |\n", + "| 2009-10-15T11:05:00Z | 33.995 | -118.678 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-15T11:05:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | 10000 | 2009-10-15T11 | |\n", + "| 2009-10-17T06:11:00Z | 34.037 | -118.545 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T06:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | 10000 | 2009-10-17T06 | |\n", + "| 2009-10-17T09:00:00Z | 34.026 | -118.534 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T09:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | 500 | 2009-10-17T09 | |\n", + "| 2009-10-17T10:38:00Z | 34.027 | -118.545 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T10:38:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | 250 | 2009-10-17T10 | |\n", + "| 2009-10-18T08:48:00Z | 34.039 | -118.548 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T08:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | 1500 | 2009-10-18T08 | |\n", + "| 2009-10-18T10:26:00Z | 34.031 | -118.541 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T10:26:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | 500 | 2009-10-18T10 | |\n", + "| 2009-10-18T11:15:00Z | 34.041 | -118.535 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T11:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | 10000 | 2009-10-18T11 | |\n", + "| 2009-10-23T23:52:00Z | 33.999 | -118.612 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-23T23:52:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | 500 | 2009-10-23T23 | |\n", + "| 2009-10-24T00:06:00Z | 34.002 | -118.604 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-24T00:06:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | 10000 | 2009-10-24T00 | |\n", + "| 2009-10-26T10:53:00Z | 34.022 | -118.537 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T10:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | 250 | 2009-10-26T10 | |\n", + "| 2009-10-27T16:21:00Z | 34.010 | -118.524 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:21:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | 1500 | 2009-10-27T16 | first of 2 records |\n", + "| 2009-10-27T16:22:00Z | 34.006 | -118.526 | MachineObservation | 2 | 1 | 3 | 1 | 3 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:22:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:22:00Z | 500 | 2009-10-27T16 | first of 2 records |\n", + "| 2009-10-29T11:53:00Z | 33.989 | -118.504 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-29T11:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | 500 | 2009-10-29T11 | |\n", + "| 2009-10-31T21:15:00Z | 34.045 | -118.530 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T21:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | 10000 | 2009-10-31T21 | |\n", "\n" ], "text/plain": [ - " atn_tbl.location_class atn_tbl.qartod_time_flag atn_tbl.qartod_speed_flag\n", - "1 nan 1 2 \n", - "2 1 1 4 \n", - "3 0 1 4 \n", - "4 1 1 1 \n", - "5 2 1 1 \n", - "6 0 1 1 \n", - "7 0 1 1 \n", - "8 2 1 1 \n", - "9 3 1 1 \n", - "10 1 1 1 \n", - "11 2 1 1 \n", - "12 0 1 1 \n", - "13 2 1 1 \n", - "14 0 1 1 \n", - "15 3 1 1 \n", - "16 1 1 1 \n", - "17 2 1 3 \n", - "18 2 1 1 \n", - "19 0 1 1 \n", - " atn_tbl.qartod_location_flag atn_tbl.qartod_rollup_flag basisOfRecord \n", - "1 1 1 HumanObservation \n", - "2 1 4 MachineObservation\n", - "3 1 4 MachineObservation\n", - "4 1 1 MachineObservation\n", - "5 1 1 MachineObservation\n", - "6 1 1 MachineObservation\n", - "7 1 1 MachineObservation\n", - "8 1 1 MachineObservation\n", - "9 1 1 MachineObservation\n", - "10 1 1 MachineObservation\n", - "11 1 1 MachineObservation\n", - "12 1 1 MachineObservation\n", - "13 1 1 MachineObservation\n", - "14 1 1 MachineObservation\n", - "15 1 1 MachineObservation\n", - "16 1 1 MachineObservation\n", - "17 1 3 MachineObservation\n", - "18 1 1 MachineObservation\n", - "19 1 1 MachineObservation\n", - " organismID eventDate \n", - "1 105838_great_white_shark 2009-09-23T00:00:00Z\n", - "2 105838_great_white_shark 2009-09-25T11:09:00Z\n", - "3 105838_great_white_shark 2009-09-25T11:11:00Z\n", - "4 105838_great_white_shark 2009-09-27T17:58:00Z\n", - "5 105838_great_white_shark 2009-10-08T20:24:00Z\n", - "6 105838_great_white_shark 2009-10-15T11:05:00Z\n", - "7 105838_great_white_shark 2009-10-17T06:11:00Z\n", - "8 105838_great_white_shark 2009-10-17T09:00:00Z\n", - "9 105838_great_white_shark 2009-10-17T10:38:00Z\n", - "10 105838_great_white_shark 2009-10-18T08:48:00Z\n", - "11 105838_great_white_shark 2009-10-18T10:26:00Z\n", - "12 105838_great_white_shark 2009-10-18T11:15:00Z\n", - "13 105838_great_white_shark 2009-10-23T23:52:00Z\n", - "14 105838_great_white_shark 2009-10-24T00:06:00Z\n", - "15 105838_great_white_shark 2009-10-26T10:53:00Z\n", - "16 105838_great_white_shark 2009-10-27T16:21:00Z\n", - "17 105838_great_white_shark 2009-10-27T16:22:00Z\n", - "18 105838_great_white_shark 2009-10-29T11:53:00Z\n", - "19 105838_great_white_shark 2009-10-31T21:15:00Z\n", - " occurrenceID decimalLatitude decimalLongitude\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 34.030 -118.560 \n", - "2 2009-09-25T11:09:00Z_0_great_white_shark 34.024 -118.556 \n", - "3 2009-09-25T11:11:00Z_0_great_white_shark 34.035 -118.549 \n", - "4 2009-09-27T17:58:00Z_0_great_white_shark 34.033 -118.547 \n", - "5 2009-10-08T20:24:00Z_0_great_white_shark 34.038 -118.581 \n", - "6 2009-10-15T11:05:00Z_0_great_white_shark 33.995 -118.678 \n", - "7 2009-10-17T06:11:00Z_0_great_white_shark 34.037 -118.545 \n", - "8 2009-10-17T09:00:00Z_0_great_white_shark 34.026 -118.534 \n", - "9 2009-10-17T10:38:00Z_0_great_white_shark 34.027 -118.545 \n", - "10 2009-10-18T08:48:00Z_0_great_white_shark 34.039 -118.548 \n", - "11 2009-10-18T10:26:00Z_0_great_white_shark 34.031 -118.541 \n", - "12 2009-10-18T11:15:00Z_0_great_white_shark 34.041 -118.535 \n", - "13 2009-10-23T23:52:00Z_0_great_white_shark 33.999 -118.612 \n", - "14 2009-10-24T00:06:00Z_0_great_white_shark 34.002 -118.604 \n", - "15 2009-10-26T10:53:00Z_0_great_white_shark 34.022 -118.537 \n", - "16 2009-10-27T16:21:00Z_0_great_white_shark 34.010 -118.524 \n", - "17 2009-10-27T16:22:00Z_0_great_white_shark 34.006 -118.526 \n", - "18 2009-10-29T11:53:00Z_0_great_white_shark 33.989 -118.504 \n", - "19 2009-10-31T21:15:00Z_0_great_white_shark 34.045 -118.530 \n", - " geodeticDatum eventID kingdom taxonRank\n", - "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z Animalia Species \n", - "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z Animalia Species \n", - "3 EPSG:4326 great_white shark_2009-09-25T11:11:00Z Animalia Species \n", - "4 EPSG:4326 great_white shark_2009-09-27T17:58:00Z Animalia Species \n", - "5 EPSG:4326 great_white shark_2009-10-08T20:24:00Z Animalia Species \n", - "6 EPSG:4326 great_white shark_2009-10-15T11:05:00Z Animalia Species \n", - "7 EPSG:4326 great_white shark_2009-10-17T06:11:00Z Animalia Species \n", - "8 EPSG:4326 great_white shark_2009-10-17T09:00:00Z Animalia Species \n", - "9 EPSG:4326 great_white shark_2009-10-17T10:38:00Z Animalia Species \n", - "10 EPSG:4326 great_white shark_2009-10-18T08:48:00Z Animalia Species \n", - "11 EPSG:4326 great_white shark_2009-10-18T10:26:00Z Animalia Species \n", - "12 EPSG:4326 great_white shark_2009-10-18T11:15:00Z Animalia Species \n", - "13 EPSG:4326 great_white shark_2009-10-23T23:52:00Z Animalia Species \n", - "14 EPSG:4326 great_white shark_2009-10-24T00:06:00Z Animalia Species \n", - "15 EPSG:4326 great_white shark_2009-10-26T10:53:00Z Animalia Species \n", - "16 EPSG:4326 great_white shark_2009-10-27T16:21:00Z Animalia Species \n", - "17 EPSG:4326 great_white shark_2009-10-27T16:22:00Z Animalia Species \n", - "18 EPSG:4326 great_white shark_2009-10-29T11:53:00Z Animalia Species \n", - "19 EPSG:4326 great_white shark_2009-10-31T21:15:00Z Animalia Species \n", - " occurrenceStatus sex lifeStage scientificName \n", - "1 present male juvenile Carcharodon carcharias\n", - "2 present male juvenile Carcharodon carcharias\n", - "3 present male juvenile Carcharodon carcharias\n", - "4 present male juvenile Carcharodon carcharias\n", - "5 present male juvenile Carcharodon carcharias\n", - "6 present male juvenile Carcharodon carcharias\n", - "7 present male juvenile Carcharodon carcharias\n", - "8 present male juvenile Carcharodon carcharias\n", - "9 present male juvenile Carcharodon carcharias\n", - "10 present male juvenile Carcharodon carcharias\n", - "11 present male juvenile Carcharodon carcharias\n", - "12 present male juvenile Carcharodon carcharias\n", - "13 present male juvenile Carcharodon carcharias\n", - "14 present male juvenile Carcharodon carcharias\n", - "15 present male juvenile Carcharodon carcharias\n", - "16 present male juvenile Carcharodon carcharias\n", - "17 present male juvenile Carcharodon carcharias\n", - "18 present male juvenile Carcharodon carcharias\n", - "19 present male juvenile Carcharodon carcharias\n", - " scientificNameID coordinateUncertaintyInMeters\n", - "1 urn:lsid:marinespecies.org:taxname:105838 0 \n", - "2 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "3 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "4 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "5 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "6 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "7 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "8 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "9 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "10 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "11 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "12 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "13 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "14 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "15 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "16 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "17 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "18 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "19 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - " eventDateHrs dataGeneralizations\n", - "1 2009-09-23T00 \n", - "2 2009-09-25T11 first of 2 records\n", - "3 2009-09-25T11 first of 2 records\n", - "4 2009-09-27T17 \n", - "5 2009-10-08T20 \n", - "6 2009-10-15T11 \n", - "7 2009-10-17T06 \n", - "8 2009-10-17T09 \n", - "9 2009-10-17T10 \n", - "10 2009-10-18T08 \n", - "11 2009-10-18T10 \n", - "12 2009-10-18T11 \n", - "13 2009-10-23T23 \n", - "14 2009-10-24T00 \n", - "15 2009-10-26T10 \n", - "16 2009-10-27T16 first of 2 records\n", - "17 2009-10-27T16 first of 2 records\n", - "18 2009-10-29T11 \n", - "19 2009-10-31T21 " + " eventDate decimalLatitude decimalLongitude basisOfRecord \n", + "1 2009-09-23T00:00:00Z 34.030 -118.560 HumanObservation \n", + "2 2009-09-25T11:09:00Z 34.024 -118.556 MachineObservation\n", + "3 2009-09-25T11:11:00Z 34.035 -118.549 MachineObservation\n", + "4 2009-09-27T17:58:00Z 34.033 -118.547 MachineObservation\n", + "5 2009-10-08T20:24:00Z 34.038 -118.581 MachineObservation\n", + "6 2009-10-15T11:05:00Z 33.995 -118.678 MachineObservation\n", + "7 2009-10-17T06:11:00Z 34.037 -118.545 MachineObservation\n", + "8 2009-10-17T09:00:00Z 34.026 -118.534 MachineObservation\n", + "9 2009-10-17T10:38:00Z 34.027 -118.545 MachineObservation\n", + "10 2009-10-18T08:48:00Z 34.039 -118.548 MachineObservation\n", + "11 2009-10-18T10:26:00Z 34.031 -118.541 MachineObservation\n", + "12 2009-10-18T11:15:00Z 34.041 -118.535 MachineObservation\n", + "13 2009-10-23T23:52:00Z 33.999 -118.612 MachineObservation\n", + "14 2009-10-24T00:06:00Z 34.002 -118.604 MachineObservation\n", + "15 2009-10-26T10:53:00Z 34.022 -118.537 MachineObservation\n", + "16 2009-10-27T16:21:00Z 34.010 -118.524 MachineObservation\n", + "17 2009-10-27T16:22:00Z 34.006 -118.526 MachineObservation\n", + "18 2009-10-29T11:53:00Z 33.989 -118.504 MachineObservation\n", + "19 2009-10-31T21:15:00Z 34.045 -118.530 MachineObservation\n", + " location_class qartod_time_flag qartod_speed_flag qartod_location_flag\n", + "1 nan 1 2 1 \n", + "2 1 1 4 1 \n", + "3 0 1 4 1 \n", + "4 1 1 1 1 \n", + "5 2 1 1 1 \n", + "6 0 1 1 1 \n", + "7 0 1 1 1 \n", + "8 2 1 1 1 \n", + "9 3 1 1 1 \n", + "10 1 1 1 1 \n", + "11 2 1 1 1 \n", + "12 0 1 1 1 \n", + "13 2 1 1 1 \n", + "14 0 1 1 1 \n", + "15 3 1 1 1 \n", + "16 1 1 1 1 \n", + "17 2 1 3 1 \n", + "18 2 1 1 1 \n", + "19 0 1 1 1 \n", + " qartod_rollup_flag kingdom taxonRank occurrenceStatus sex lifeStage\n", + "1 1 Animalia Species present male juvenile \n", + "2 4 Animalia Species present male juvenile \n", + "3 4 Animalia Species present male juvenile \n", + "4 1 Animalia Species present male juvenile \n", + "5 1 Animalia Species present male juvenile \n", + "6 1 Animalia Species present male juvenile \n", + "7 1 Animalia Species present male juvenile \n", + "8 1 Animalia Species present male juvenile \n", + "9 1 Animalia Species present male juvenile \n", + "10 1 Animalia Species present male juvenile \n", + "11 1 Animalia Species present male juvenile \n", + "12 1 Animalia Species present male juvenile \n", + "13 1 Animalia Species present male juvenile \n", + "14 1 Animalia Species present male juvenile \n", + "15 1 Animalia Species present male juvenile \n", + "16 1 Animalia Species present male juvenile \n", + "17 3 Animalia Species present male juvenile \n", + "18 1 Animalia Species present male juvenile \n", + "19 1 Animalia Species present male juvenile \n", + " scientificName scientificNameID \n", + "1 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "2 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "3 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "4 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "5 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "6 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "7 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "8 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "9 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "10 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "11 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "12 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "13 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "14 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "15 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "16 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "17 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "18 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "19 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + " organismID occurrenceID \n", + "1 105838_great_white_shark 2009-09-23T00:00:00Z_0_great_white_shark\n", + "2 105838_great_white_shark 2009-09-25T11:09:00Z_0_great_white_shark\n", + "3 105838_great_white_shark 2009-09-25T11:11:00Z_0_great_white_shark\n", + "4 105838_great_white_shark 2009-09-27T17:58:00Z_0_great_white_shark\n", + "5 105838_great_white_shark 2009-10-08T20:24:00Z_0_great_white_shark\n", + "6 105838_great_white_shark 2009-10-15T11:05:00Z_0_great_white_shark\n", + "7 105838_great_white_shark 2009-10-17T06:11:00Z_0_great_white_shark\n", + "8 105838_great_white_shark 2009-10-17T09:00:00Z_0_great_white_shark\n", + "9 105838_great_white_shark 2009-10-17T10:38:00Z_0_great_white_shark\n", + "10 105838_great_white_shark 2009-10-18T08:48:00Z_0_great_white_shark\n", + "11 105838_great_white_shark 2009-10-18T10:26:00Z_0_great_white_shark\n", + "12 105838_great_white_shark 2009-10-18T11:15:00Z_0_great_white_shark\n", + "13 105838_great_white_shark 2009-10-23T23:52:00Z_0_great_white_shark\n", + "14 105838_great_white_shark 2009-10-24T00:06:00Z_0_great_white_shark\n", + "15 105838_great_white_shark 2009-10-26T10:53:00Z_0_great_white_shark\n", + "16 105838_great_white_shark 2009-10-27T16:21:00Z_0_great_white_shark\n", + "17 105838_great_white_shark 2009-10-27T16:22:00Z_0_great_white_shark\n", + "18 105838_great_white_shark 2009-10-29T11:53:00Z_0_great_white_shark\n", + "19 105838_great_white_shark 2009-10-31T21:15:00Z_0_great_white_shark\n", + " geodeticDatum eventID \n", + "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z\n", + "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z\n", + "3 EPSG:4326 great_white shark_2009-09-25T11:11:00Z\n", + "4 EPSG:4326 great_white shark_2009-09-27T17:58:00Z\n", + "5 EPSG:4326 great_white shark_2009-10-08T20:24:00Z\n", + "6 EPSG:4326 great_white shark_2009-10-15T11:05:00Z\n", + "7 EPSG:4326 great_white shark_2009-10-17T06:11:00Z\n", + "8 EPSG:4326 great_white shark_2009-10-17T09:00:00Z\n", + "9 EPSG:4326 great_white shark_2009-10-17T10:38:00Z\n", + "10 EPSG:4326 great_white shark_2009-10-18T08:48:00Z\n", + "11 EPSG:4326 great_white shark_2009-10-18T10:26:00Z\n", + "12 EPSG:4326 great_white shark_2009-10-18T11:15:00Z\n", + "13 EPSG:4326 great_white shark_2009-10-23T23:52:00Z\n", + "14 EPSG:4326 great_white shark_2009-10-24T00:06:00Z\n", + "15 EPSG:4326 great_white shark_2009-10-26T10:53:00Z\n", + "16 EPSG:4326 great_white shark_2009-10-27T16:21:00Z\n", + "17 EPSG:4326 great_white shark_2009-10-27T16:22:00Z\n", + "18 EPSG:4326 great_white shark_2009-10-29T11:53:00Z\n", + "19 EPSG:4326 great_white shark_2009-10-31T21:15:00Z\n", + " coordinateUncertaintyInMeters eventDateHrs dataGeneralizations\n", + "1 0 2009-09-23T00 \n", + "2 1500 2009-09-25T11 first of 2 records\n", + "3 10000 2009-09-25T11 first of 2 records\n", + "4 1500 2009-09-27T17 \n", + "5 500 2009-10-08T20 \n", + "6 10000 2009-10-15T11 \n", + "7 10000 2009-10-17T06 \n", + "8 500 2009-10-17T09 \n", + "9 250 2009-10-17T10 \n", + "10 1500 2009-10-18T08 \n", + "11 500 2009-10-18T10 \n", + "12 10000 2009-10-18T11 \n", + "13 500 2009-10-23T23 \n", + "14 10000 2009-10-24T00 \n", + "15 250 2009-10-26T10 \n", + "16 1500 2009-10-27T16 first of 2 records\n", + "17 500 2009-10-27T16 first of 2 records\n", + "18 500 2009-10-29T11 \n", + "19 10000 2009-10-31T21 " ] }, "metadata": {}, @@ -4664,25 +4419,39 @@ } ], "source": [ - "library(lubridate)\n", + "# library(lubridate) - loaded above\n", "\n", "# sort by date\n", "occurrencedf <- occurrencedf %>% arrange(eventDate)\n", "\n", "# create column of date to the hour which will be our decimation strategy\n", - "occurrencedf$eventDateHrs <- format(as.POSIXct(occurrencedf$eventDate, format=\"%Y-%m-%dT%H:%M:%SZ\"),\"%Y-%m-%dT%H\")\n", + "# occurrencedf$eventDateHrs <- format(as.POSIXct(occurrencedf$eventDate, format=\"%Y-%m-%dT%H:%M:%SZ\"),\"%Y-%m-%dT%H\")\n", "\n", - "occurrencedf <- occurrencedf %>%\n", - " add_count(eventDateHrs)\n", + "#occurrencedf <- occurrencedf %>%\n", + "# add_count(eventDateHrs)\n", "\n", "# create dataGeneralizations string\n", - "occurrencedf$dataGeneralizations <- paste(\"first of \", occurrencedf$n ,\"records\")\n", + "# occurrencedf$dataGeneralizations <- paste(\"first of \", occurrencedf$n ,\"records\")\n", "\n", - "occurrencedf[\"dataGeneralizations\"][occurrencedf[\"n\"] == 1] <- \"\"\n", + "# occurrencedf[\"dataGeneralizations\"][occurrencedf[\"n\"] == 1] <- \"\"\n", "\n", "# remove n column\n", "\n", - "occurrencedf$n <- NULL\n", + "# occurrencedf$n <- NULL\n", + "\n", + "# I think using tidy syntax here makes it a little more readable\n", + "\n", + "occurrencedf <- occurrencedf %>%\n", + " mutate(eventDateHrs = format(as.POSIXct(eventDate, format=\"%Y-%m-%dT%H:%M:%SZ\"),\"%Y-%m-%dT%H\")\n", + " ) %>%\n", + " add_count(eventDateHrs) %>%\n", + " mutate(dataGeneralizations = case_when(n == 1 ~ \"\",\n", + " TRUE ~ paste(\"first of \", n ,\"records\")\n", + " )\n", + " ) %>%\n", + " select(-n)\n", + "\n", + "\n", "\n", "occurrencedf" ] @@ -4702,234 +4471,216 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": 37, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", "\n", "
A data.frame: 17 × 22A tibble: 17 × 22
atn_tbl.location_classatn_tbl.qartod_time_flagatn_tbl.qartod_speed_flagatn_tbl.qartod_location_flagatn_tbl.qartod_rollup_flagbasisOfRecordorganismIDeventDateoccurrenceIDdecimalLatitudedecimalLongitudegeodeticDatumeventIDkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDcoordinateUncertaintyInMetersdataGeneralizations
<chr><int><int><int><int><chr><chr><chr><chr><dbl><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
eventDatedecimalLatitudedecimalLongitudebasisOfRecordlocation_classqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDorganismIDoccurrenceIDgeodeticDatumeventIDcoordinateUncertaintyInMetersdataGeneralizations
<chr><dbl><dbl><chr><chr><int><int><int><int><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><dbl><chr>
nan1211HumanObservation 105838_great_white_shark2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark34.030-118.560EPSG:4326great_white shark_2009-09-23T00:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058380
1 1414MachineObservation105838_great_white_shark2009-09-25T11:09:00Z2009-09-25T11:09:00Z_0_great_white_shark34.024-118.556EPSG:4326great_white shark_2009-09-25T11:09:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 first of 2 records
1 1111MachineObservation105838_great_white_shark2009-09-27T17:58:00Z2009-09-27T17:58:00Z_0_great_white_shark34.033-118.547EPSG:4326great_white shark_2009-09-27T17:58:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-08T20:24:00Z2009-10-08T20:24:00Z_0_great_white_shark34.038-118.581EPSG:4326great_white shark_2009-10-08T20:24:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-15T11:05:00Z2009-10-15T11:05:00Z_0_great_white_shark33.995-118.678EPSG:4326great_white shark_2009-10-15T11:05:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
0 1111MachineObservation105838_great_white_shark2009-10-17T06:11:00Z2009-10-17T06:11:00Z_0_great_white_shark34.037-118.545EPSG:4326great_white shark_2009-10-17T06:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-17T09:00:00Z2009-10-17T09:00:00Z_0_great_white_shark34.026-118.534EPSG:4326great_white shark_2009-10-17T09:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
3 1111MachineObservation105838_great_white_shark2009-10-17T10:38:00Z2009-10-17T10:38:00Z_0_great_white_shark34.027-118.545EPSG:4326great_white shark_2009-10-17T10:38:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-18T08:48:00Z2009-10-18T08:48:00Z_0_great_white_shark34.039-118.548EPSG:4326great_white shark_2009-10-18T08:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-18T10:26:00Z2009-10-18T10:26:00Z_0_great_white_shark34.031-118.541EPSG:4326great_white shark_2009-10-18T10:26:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-18T11:15:00Z2009-10-18T11:15:00Z_0_great_white_shark34.041-118.535EPSG:4326great_white shark_2009-10-18T11:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-23T23:52:00Z2009-10-23T23:52:00Z_0_great_white_shark33.999-118.612EPSG:4326great_white shark_2009-10-23T23:52:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-24T00:06:00Z2009-10-24T00:06:00Z_0_great_white_shark34.002-118.604EPSG:4326great_white shark_2009-10-24T00:06:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
3 1111MachineObservation105838_great_white_shark2009-10-26T10:53:00Z2009-10-26T10:53:00Z_0_great_white_shark34.022-118.537EPSG:4326great_white shark_2009-10-26T10:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-27T16:21:00Z2009-10-27T16:21:00Z_0_great_white_shark34.010-118.524EPSG:4326great_white shark_2009-10-27T16:21:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 first of 2 records
2 1111MachineObservation105838_great_white_shark2009-10-29T11:53:00Z2009-10-29T11:53:00Z_0_great_white_shark33.989-118.504EPSG:4326great_white shark_2009-10-29T11:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-31T21:15:00Z2009-10-31T21:15:00Z_0_great_white_shark34.045-118.530EPSG:4326great_white shark_2009-10-31T21:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2009-09-23T00:00:00Z34.030-118.560HumanObservation nan1211AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-23T00:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-23T00:00:00Z 0
2009-09-25T11:09:00Z34.024-118.556MachineObservation1 1414AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-25T11:09:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-25T11:09:00Z 1500first of 2 records
2009-09-27T17:58:00Z34.033-118.547MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-27T17:58:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-27T17:58:00Z 1500
2009-10-08T20:24:00Z34.038-118.581MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-08T20:24:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-08T20:24:00Z 500
2009-10-15T11:05:00Z33.995-118.678MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-15T11:05:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-15T11:05:00Z10000
2009-10-17T06:11:00Z34.037-118.545MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T06:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T06:11:00Z10000
2009-10-17T09:00:00Z34.026-118.534MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T09:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T09:00:00Z 500
2009-10-17T10:38:00Z34.027-118.545MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T10:38:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T10:38:00Z 250
2009-10-18T08:48:00Z34.039-118.548MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T08:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T08:48:00Z 1500
2009-10-18T10:26:00Z34.031-118.541MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T10:26:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T10:26:00Z 500
2009-10-18T11:15:00Z34.041-118.535MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T11:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T11:15:00Z10000
2009-10-23T23:52:00Z33.999-118.612MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-23T23:52:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-23T23:52:00Z 500
2009-10-24T00:06:00Z34.002-118.604MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-24T00:06:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-24T00:06:00Z10000
2009-10-26T10:53:00Z34.022-118.537MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T10:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T10:53:00Z 250
2009-10-27T16:21:00Z34.010-118.524MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:21:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:21:00Z 1500first of 2 records
2009-10-29T11:53:00Z33.989-118.504MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-29T11:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-29T11:53:00Z 500
2009-10-31T21:15:00Z34.045-118.530MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T21:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T21:15:00Z10000
\n" ], "text/latex": [ - "A data.frame: 17 × 22\n", + "A tibble: 17 × 22\n", "\\begin{tabular}{llllllllllllllllllllll}\n", - " atn\\_tbl.location\\_class & atn\\_tbl.qartod\\_time\\_flag & atn\\_tbl.qartod\\_speed\\_flag & atn\\_tbl.qartod\\_location\\_flag & atn\\_tbl.qartod\\_rollup\\_flag & basisOfRecord & organismID & eventDate & occurrenceID & decimalLatitude & decimalLongitude & geodeticDatum & eventID & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & coordinateUncertaintyInMeters & dataGeneralizations\\\\\n", - " & & & & & & & & & & & & & & & & & & & & & \\\\\n", + " eventDate & decimalLatitude & decimalLongitude & basisOfRecord & location\\_class & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & organismID & occurrenceID & geodeticDatum & eventID & coordinateUncertaintyInMeters & dataGeneralizations\\\\\n", + " & & & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", - "\t nan & 1 & 2 & 1 & 1 & HumanObservation & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 34.030 & -118.560 & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 0 & \\\\\n", - "\t 1 & 1 & 4 & 1 & 4 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & 34.024 & -118.556 & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & first of 2 records\\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & 34.033 & -118.547 & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & 34.038 & -118.581 & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & 33.995 & -118.678 & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & 34.037 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & 34.026 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & 34.027 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & 34.039 & -118.548 & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & 34.031 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & 34.041 & -118.535 & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & 33.999 & -118.612 & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & 34.002 & -118.604 & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & 34.022 & -118.537 & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & 34.010 & -118.524 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & first of 2 records\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & 33.989 & -118.504 & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & 34.045 & -118.530 & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", + "\t 2009-09-23T00:00:00Z & 34.030 & -118.560 & HumanObservation & nan & 1 & 2 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & 0 & \\\\\n", + "\t 2009-09-25T11:09:00Z & 34.024 & -118.556 & MachineObservation & 1 & 1 & 4 & 1 & 4 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-25T11:09:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-25T11:09:00Z & 1500 & first of 2 records\\\\\n", + "\t 2009-09-27T17:58:00Z & 34.033 & -118.547 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & 1500 & \\\\\n", + "\t 2009-10-08T20:24:00Z & 34.038 & -118.581 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & 500 & \\\\\n", + "\t 2009-10-15T11:05:00Z & 33.995 & -118.678 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & 10000 & \\\\\n", + "\t 2009-10-17T06:11:00Z & 34.037 & -118.545 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & 10000 & \\\\\n", + "\t 2009-10-17T09:00:00Z & 34.026 & -118.534 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & 500 & \\\\\n", + "\t 2009-10-17T10:38:00Z & 34.027 & -118.545 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & 250 & \\\\\n", + "\t 2009-10-18T08:48:00Z & 34.039 & -118.548 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & 1500 & \\\\\n", + "\t 2009-10-18T10:26:00Z & 34.031 & -118.541 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & 500 & \\\\\n", + "\t 2009-10-18T11:15:00Z & 34.041 & -118.535 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & 10000 & \\\\\n", + "\t 2009-10-23T23:52:00Z & 33.999 & -118.612 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & 500 & \\\\\n", + "\t 2009-10-24T00:06:00Z & 34.002 & -118.604 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & 10000 & \\\\\n", + "\t 2009-10-26T10:53:00Z & 34.022 & -118.537 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & 250 & \\\\\n", + "\t 2009-10-27T16:21:00Z & 34.010 & -118.524 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & 1500 & first of 2 records\\\\\n", + "\t 2009-10-29T11:53:00Z & 33.989 & -118.504 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & 500 & \\\\\n", + "\t 2009-10-31T21:15:00Z & 34.045 & -118.530 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & 10000 & \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A data.frame: 17 × 22\n", + "A tibble: 17 × 22\n", "\n", - "| atn_tbl.location_class <chr> | atn_tbl.qartod_time_flag <int> | atn_tbl.qartod_speed_flag <int> | atn_tbl.qartod_location_flag <int> | atn_tbl.qartod_rollup_flag <int> | basisOfRecord <chr> | organismID <chr> | eventDate <chr> | occurrenceID <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | geodeticDatum <chr> | eventID <chr> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | coordinateUncertaintyInMeters <chr> | dataGeneralizations <chr> |\n", + "| eventDate <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | basisOfRecord <chr> | location_class <chr> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | organismID <chr> | occurrenceID <chr> | geodeticDatum <chr> | eventID <chr> | coordinateUncertaintyInMeters <dbl> | dataGeneralizations <chr> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| nan | 1 | 2 | 1 | 1 | HumanObservation | 105838_great_white_shark | 2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 34.030 | -118.560 | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 0 | |\n", - "| 1 | 1 | 4 | 1 | 4 | MachineObservation | 105838_great_white_shark | 2009-09-25T11:09:00Z | 2009-09-25T11:09:00Z_0_great_white_shark | 34.024 | -118.556 | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | first of 2 records |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-27T17:58:00Z | 2009-09-27T17:58:00Z_0_great_white_shark | 34.033 | -118.547 | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-08T20:24:00Z | 2009-10-08T20:24:00Z_0_great_white_shark | 34.038 | -118.581 | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-15T11:05:00Z | 2009-10-15T11:05:00Z_0_great_white_shark | 33.995 | -118.678 | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T06:11:00Z | 2009-10-17T06:11:00Z_0_great_white_shark | 34.037 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T09:00:00Z | 2009-10-17T09:00:00Z_0_great_white_shark | 34.026 | -118.534 | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T10:38:00Z | 2009-10-17T10:38:00Z_0_great_white_shark | 34.027 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T08:48:00Z | 2009-10-18T08:48:00Z_0_great_white_shark | 34.039 | -118.548 | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T10:26:00Z | 2009-10-18T10:26:00Z_0_great_white_shark | 34.031 | -118.541 | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T11:15:00Z | 2009-10-18T11:15:00Z_0_great_white_shark | 34.041 | -118.535 | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-23T23:52:00Z | 2009-10-23T23:52:00Z_0_great_white_shark | 33.999 | -118.612 | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-24T00:06:00Z | 2009-10-24T00:06:00Z_0_great_white_shark | 34.002 | -118.604 | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T10:53:00Z | 2009-10-26T10:53:00Z_0_great_white_shark | 34.022 | -118.537 | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:21:00Z | 2009-10-27T16:21:00Z_0_great_white_shark | 34.010 | -118.524 | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | first of 2 records |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-29T11:53:00Z | 2009-10-29T11:53:00Z_0_great_white_shark | 33.989 | -118.504 | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T21:15:00Z | 2009-10-31T21:15:00Z_0_great_white_shark | 34.045 | -118.530 | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", + "| 2009-09-23T00:00:00Z | 34.030 | -118.560 | HumanObservation | nan | 1 | 2 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-23T00:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | 0 | |\n", + "| 2009-09-25T11:09:00Z | 34.024 | -118.556 | MachineObservation | 1 | 1 | 4 | 1 | 4 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-25T11:09:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-25T11:09:00Z | 1500 | first of 2 records |\n", + "| 2009-09-27T17:58:00Z | 34.033 | -118.547 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-27T17:58:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | 1500 | |\n", + "| 2009-10-08T20:24:00Z | 34.038 | -118.581 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-08T20:24:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | 500 | |\n", + "| 2009-10-15T11:05:00Z | 33.995 | -118.678 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-15T11:05:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | 10000 | |\n", + "| 2009-10-17T06:11:00Z | 34.037 | -118.545 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T06:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | 10000 | |\n", + "| 2009-10-17T09:00:00Z | 34.026 | -118.534 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T09:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | 500 | |\n", + "| 2009-10-17T10:38:00Z | 34.027 | -118.545 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T10:38:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | 250 | |\n", + "| 2009-10-18T08:48:00Z | 34.039 | -118.548 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T08:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | 1500 | |\n", + "| 2009-10-18T10:26:00Z | 34.031 | -118.541 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T10:26:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | 500 | |\n", + "| 2009-10-18T11:15:00Z | 34.041 | -118.535 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T11:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | 10000 | |\n", + "| 2009-10-23T23:52:00Z | 33.999 | -118.612 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-23T23:52:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | 500 | |\n", + "| 2009-10-24T00:06:00Z | 34.002 | -118.604 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-24T00:06:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | 10000 | |\n", + "| 2009-10-26T10:53:00Z | 34.022 | -118.537 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T10:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | 250 | |\n", + "| 2009-10-27T16:21:00Z | 34.010 | -118.524 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:21:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | 1500 | first of 2 records |\n", + "| 2009-10-29T11:53:00Z | 33.989 | -118.504 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-29T11:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | 500 | |\n", + "| 2009-10-31T21:15:00Z | 34.045 | -118.530 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T21:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | 10000 | |\n", "\n" ], "text/plain": [ - " atn_tbl.location_class atn_tbl.qartod_time_flag atn_tbl.qartod_speed_flag\n", - "1 nan 1 2 \n", - "2 1 1 4 \n", - "3 1 1 1 \n", - "4 2 1 1 \n", - "5 0 1 1 \n", - "6 0 1 1 \n", - "7 2 1 1 \n", - "8 3 1 1 \n", - "9 1 1 1 \n", - "10 2 1 1 \n", - "11 0 1 1 \n", - "12 2 1 1 \n", - "13 0 1 1 \n", - "14 3 1 1 \n", - "15 1 1 1 \n", - "16 2 1 1 \n", - "17 0 1 1 \n", - " atn_tbl.qartod_location_flag atn_tbl.qartod_rollup_flag basisOfRecord \n", - "1 1 1 HumanObservation \n", - "2 1 4 MachineObservation\n", - "3 1 1 MachineObservation\n", - "4 1 1 MachineObservation\n", - "5 1 1 MachineObservation\n", - "6 1 1 MachineObservation\n", - "7 1 1 MachineObservation\n", - "8 1 1 MachineObservation\n", - "9 1 1 MachineObservation\n", - "10 1 1 MachineObservation\n", - "11 1 1 MachineObservation\n", - "12 1 1 MachineObservation\n", - "13 1 1 MachineObservation\n", - "14 1 1 MachineObservation\n", - "15 1 1 MachineObservation\n", - "16 1 1 MachineObservation\n", - "17 1 1 MachineObservation\n", - " organismID eventDate \n", - "1 105838_great_white_shark 2009-09-23T00:00:00Z\n", - "2 105838_great_white_shark 2009-09-25T11:09:00Z\n", - "3 105838_great_white_shark 2009-09-27T17:58:00Z\n", - "4 105838_great_white_shark 2009-10-08T20:24:00Z\n", - "5 105838_great_white_shark 2009-10-15T11:05:00Z\n", - "6 105838_great_white_shark 2009-10-17T06:11:00Z\n", - "7 105838_great_white_shark 2009-10-17T09:00:00Z\n", - "8 105838_great_white_shark 2009-10-17T10:38:00Z\n", - "9 105838_great_white_shark 2009-10-18T08:48:00Z\n", - "10 105838_great_white_shark 2009-10-18T10:26:00Z\n", - "11 105838_great_white_shark 2009-10-18T11:15:00Z\n", - "12 105838_great_white_shark 2009-10-23T23:52:00Z\n", - "13 105838_great_white_shark 2009-10-24T00:06:00Z\n", - "14 105838_great_white_shark 2009-10-26T10:53:00Z\n", - "15 105838_great_white_shark 2009-10-27T16:21:00Z\n", - "16 105838_great_white_shark 2009-10-29T11:53:00Z\n", - "17 105838_great_white_shark 2009-10-31T21:15:00Z\n", - " occurrenceID decimalLatitude decimalLongitude\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 34.030 -118.560 \n", - "2 2009-09-25T11:09:00Z_0_great_white_shark 34.024 -118.556 \n", - "3 2009-09-27T17:58:00Z_0_great_white_shark 34.033 -118.547 \n", - "4 2009-10-08T20:24:00Z_0_great_white_shark 34.038 -118.581 \n", - "5 2009-10-15T11:05:00Z_0_great_white_shark 33.995 -118.678 \n", - "6 2009-10-17T06:11:00Z_0_great_white_shark 34.037 -118.545 \n", - "7 2009-10-17T09:00:00Z_0_great_white_shark 34.026 -118.534 \n", - "8 2009-10-17T10:38:00Z_0_great_white_shark 34.027 -118.545 \n", - "9 2009-10-18T08:48:00Z_0_great_white_shark 34.039 -118.548 \n", - "10 2009-10-18T10:26:00Z_0_great_white_shark 34.031 -118.541 \n", - "11 2009-10-18T11:15:00Z_0_great_white_shark 34.041 -118.535 \n", - "12 2009-10-23T23:52:00Z_0_great_white_shark 33.999 -118.612 \n", - "13 2009-10-24T00:06:00Z_0_great_white_shark 34.002 -118.604 \n", - "14 2009-10-26T10:53:00Z_0_great_white_shark 34.022 -118.537 \n", - "15 2009-10-27T16:21:00Z_0_great_white_shark 34.010 -118.524 \n", - "16 2009-10-29T11:53:00Z_0_great_white_shark 33.989 -118.504 \n", - "17 2009-10-31T21:15:00Z_0_great_white_shark 34.045 -118.530 \n", - " geodeticDatum eventID kingdom taxonRank\n", - "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z Animalia Species \n", - "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z Animalia Species \n", - "3 EPSG:4326 great_white shark_2009-09-27T17:58:00Z Animalia Species \n", - "4 EPSG:4326 great_white shark_2009-10-08T20:24:00Z Animalia Species \n", - "5 EPSG:4326 great_white shark_2009-10-15T11:05:00Z Animalia Species \n", - "6 EPSG:4326 great_white shark_2009-10-17T06:11:00Z Animalia Species \n", - "7 EPSG:4326 great_white shark_2009-10-17T09:00:00Z Animalia Species \n", - "8 EPSG:4326 great_white shark_2009-10-17T10:38:00Z Animalia Species \n", - "9 EPSG:4326 great_white shark_2009-10-18T08:48:00Z Animalia Species \n", - "10 EPSG:4326 great_white shark_2009-10-18T10:26:00Z Animalia Species \n", - "11 EPSG:4326 great_white shark_2009-10-18T11:15:00Z Animalia Species \n", - "12 EPSG:4326 great_white shark_2009-10-23T23:52:00Z Animalia Species \n", - "13 EPSG:4326 great_white shark_2009-10-24T00:06:00Z Animalia Species \n", - "14 EPSG:4326 great_white shark_2009-10-26T10:53:00Z Animalia Species \n", - "15 EPSG:4326 great_white shark_2009-10-27T16:21:00Z Animalia Species \n", - "16 EPSG:4326 great_white shark_2009-10-29T11:53:00Z Animalia Species \n", - "17 EPSG:4326 great_white shark_2009-10-31T21:15:00Z Animalia Species \n", - " occurrenceStatus sex lifeStage scientificName \n", - "1 present male juvenile Carcharodon carcharias\n", - "2 present male juvenile Carcharodon carcharias\n", - "3 present male juvenile Carcharodon carcharias\n", - "4 present male juvenile Carcharodon carcharias\n", - "5 present male juvenile Carcharodon carcharias\n", - "6 present male juvenile Carcharodon carcharias\n", - "7 present male juvenile Carcharodon carcharias\n", - "8 present male juvenile Carcharodon carcharias\n", - "9 present male juvenile Carcharodon carcharias\n", - "10 present male juvenile Carcharodon carcharias\n", - "11 present male juvenile Carcharodon carcharias\n", - "12 present male juvenile Carcharodon carcharias\n", - "13 present male juvenile Carcharodon carcharias\n", - "14 present male juvenile Carcharodon carcharias\n", - "15 present male juvenile Carcharodon carcharias\n", - "16 present male juvenile Carcharodon carcharias\n", - "17 present male juvenile Carcharodon carcharias\n", - " scientificNameID coordinateUncertaintyInMeters\n", - "1 urn:lsid:marinespecies.org:taxname:105838 0 \n", - "2 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "3 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "4 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "5 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "6 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "7 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "8 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "9 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "10 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "11 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "12 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "13 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "14 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "15 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "16 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "17 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - " dataGeneralizations\n", - "1 \n", - "2 first of 2 records\n", - "3 \n", - "4 \n", - "5 \n", - "6 \n", - "7 \n", - "8 \n", - "9 \n", - "10 \n", - "11 \n", - "12 \n", - "13 \n", - "14 \n", - "15 first of 2 records\n", - "16 \n", - "17 " + " eventDate decimalLatitude decimalLongitude basisOfRecord \n", + "1 2009-09-23T00:00:00Z 34.030 -118.560 HumanObservation \n", + "2 2009-09-25T11:09:00Z 34.024 -118.556 MachineObservation\n", + "3 2009-09-27T17:58:00Z 34.033 -118.547 MachineObservation\n", + "4 2009-10-08T20:24:00Z 34.038 -118.581 MachineObservation\n", + "5 2009-10-15T11:05:00Z 33.995 -118.678 MachineObservation\n", + "6 2009-10-17T06:11:00Z 34.037 -118.545 MachineObservation\n", + "7 2009-10-17T09:00:00Z 34.026 -118.534 MachineObservation\n", + "8 2009-10-17T10:38:00Z 34.027 -118.545 MachineObservation\n", + "9 2009-10-18T08:48:00Z 34.039 -118.548 MachineObservation\n", + "10 2009-10-18T10:26:00Z 34.031 -118.541 MachineObservation\n", + "11 2009-10-18T11:15:00Z 34.041 -118.535 MachineObservation\n", + "12 2009-10-23T23:52:00Z 33.999 -118.612 MachineObservation\n", + "13 2009-10-24T00:06:00Z 34.002 -118.604 MachineObservation\n", + "14 2009-10-26T10:53:00Z 34.022 -118.537 MachineObservation\n", + "15 2009-10-27T16:21:00Z 34.010 -118.524 MachineObservation\n", + "16 2009-10-29T11:53:00Z 33.989 -118.504 MachineObservation\n", + "17 2009-10-31T21:15:00Z 34.045 -118.530 MachineObservation\n", + " location_class qartod_time_flag qartod_speed_flag qartod_location_flag\n", + "1 nan 1 2 1 \n", + "2 1 1 4 1 \n", + "3 1 1 1 1 \n", + "4 2 1 1 1 \n", + "5 0 1 1 1 \n", + "6 0 1 1 1 \n", + "7 2 1 1 1 \n", + "8 3 1 1 1 \n", + "9 1 1 1 1 \n", + "10 2 1 1 1 \n", + "11 0 1 1 1 \n", + "12 2 1 1 1 \n", + "13 0 1 1 1 \n", + "14 3 1 1 1 \n", + "15 1 1 1 1 \n", + "16 2 1 1 1 \n", + "17 0 1 1 1 \n", + " qartod_rollup_flag kingdom taxonRank occurrenceStatus sex lifeStage\n", + "1 1 Animalia Species present male juvenile \n", + "2 4 Animalia Species present male juvenile \n", + "3 1 Animalia Species present male juvenile \n", + "4 1 Animalia Species present male juvenile \n", + "5 1 Animalia Species present male juvenile \n", + "6 1 Animalia Species present male juvenile \n", + "7 1 Animalia Species present male juvenile \n", + "8 1 Animalia Species present male juvenile \n", + "9 1 Animalia Species present male juvenile \n", + "10 1 Animalia Species present male juvenile \n", + "11 1 Animalia Species present male juvenile \n", + "12 1 Animalia Species present male juvenile \n", + "13 1 Animalia Species present male juvenile \n", + "14 1 Animalia Species present male juvenile \n", + "15 1 Animalia Species present male juvenile \n", + "16 1 Animalia Species present male juvenile \n", + "17 1 Animalia Species present male juvenile \n", + " scientificName scientificNameID \n", + "1 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "2 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "3 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "4 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "5 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "6 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "7 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "8 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "9 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "10 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "11 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "12 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "13 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "14 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "15 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "16 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "17 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + " organismID occurrenceID \n", + "1 105838_great_white_shark 2009-09-23T00:00:00Z_0_great_white_shark\n", + "2 105838_great_white_shark 2009-09-25T11:09:00Z_0_great_white_shark\n", + "3 105838_great_white_shark 2009-09-27T17:58:00Z_0_great_white_shark\n", + "4 105838_great_white_shark 2009-10-08T20:24:00Z_0_great_white_shark\n", + "5 105838_great_white_shark 2009-10-15T11:05:00Z_0_great_white_shark\n", + "6 105838_great_white_shark 2009-10-17T06:11:00Z_0_great_white_shark\n", + "7 105838_great_white_shark 2009-10-17T09:00:00Z_0_great_white_shark\n", + "8 105838_great_white_shark 2009-10-17T10:38:00Z_0_great_white_shark\n", + "9 105838_great_white_shark 2009-10-18T08:48:00Z_0_great_white_shark\n", + "10 105838_great_white_shark 2009-10-18T10:26:00Z_0_great_white_shark\n", + "11 105838_great_white_shark 2009-10-18T11:15:00Z_0_great_white_shark\n", + "12 105838_great_white_shark 2009-10-23T23:52:00Z_0_great_white_shark\n", + "13 105838_great_white_shark 2009-10-24T00:06:00Z_0_great_white_shark\n", + "14 105838_great_white_shark 2009-10-26T10:53:00Z_0_great_white_shark\n", + "15 105838_great_white_shark 2009-10-27T16:21:00Z_0_great_white_shark\n", + "16 105838_great_white_shark 2009-10-29T11:53:00Z_0_great_white_shark\n", + "17 105838_great_white_shark 2009-10-31T21:15:00Z_0_great_white_shark\n", + " geodeticDatum eventID \n", + "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z\n", + "2 EPSG:4326 great_white shark_2009-09-25T11:09:00Z\n", + "3 EPSG:4326 great_white shark_2009-09-27T17:58:00Z\n", + "4 EPSG:4326 great_white shark_2009-10-08T20:24:00Z\n", + "5 EPSG:4326 great_white shark_2009-10-15T11:05:00Z\n", + "6 EPSG:4326 great_white shark_2009-10-17T06:11:00Z\n", + "7 EPSG:4326 great_white shark_2009-10-17T09:00:00Z\n", + "8 EPSG:4326 great_white shark_2009-10-17T10:38:00Z\n", + "9 EPSG:4326 great_white shark_2009-10-18T08:48:00Z\n", + "10 EPSG:4326 great_white shark_2009-10-18T10:26:00Z\n", + "11 EPSG:4326 great_white shark_2009-10-18T11:15:00Z\n", + "12 EPSG:4326 great_white shark_2009-10-23T23:52:00Z\n", + "13 EPSG:4326 great_white shark_2009-10-24T00:06:00Z\n", + "14 EPSG:4326 great_white shark_2009-10-26T10:53:00Z\n", + "15 EPSG:4326 great_white shark_2009-10-27T16:21:00Z\n", + "16 EPSG:4326 great_white shark_2009-10-29T11:53:00Z\n", + "17 EPSG:4326 great_white shark_2009-10-31T21:15:00Z\n", + " coordinateUncertaintyInMeters dataGeneralizations\n", + "1 0 \n", + "2 1500 first of 2 records\n", + "3 1500 \n", + "4 500 \n", + "5 10000 \n", + "6 10000 \n", + "7 500 \n", + "8 250 \n", + "9 1500 \n", + "10 500 \n", + "11 10000 \n", + "12 500 \n", + "13 10000 \n", + "14 250 \n", + "15 1500 first of 2 records\n", + "16 500 \n", + "17 10000 " ] }, "metadata": {}, @@ -4937,20 +4688,21 @@ } ], "source": [ - "library(lubridate)\n", + "# library(lubridate) - loaded above\n", "\n", "# sort by date\n", "occurrencedf_dec <- occurrencedf %>% arrange(eventDate)\n", "\n", "# create column of date to the hour which will be our decimation strategy\n", - "occurrencedf_dec$eventDateHrs <- format(as.POSIXct(occurrencedf_dec$eventDate, format=\"%Y-%m-%dT%H:%M:%SZ\"),\"%Y-%m-%dT%H\")\n", + "# occurrencedf_dec$eventDateHrs <- format(as.POSIXct(occurrencedf_dec$eventDate, format=\"%Y-%m-%dT%H:%M:%SZ\"),\"%Y-%m-%dT%H\")\n", "\n", "# occurrencedf %>% duplicated(occurrencedf$eventDateHrs)\n", "\n", "# filter table to only unique date + hour and pick the first row.\n", - "occurrencedf_dec <- distinct(occurrencedf_dec,eventDateHrs,.keep_all = TRUE)\n", + "occurrencedf_dec <- distinct(occurrencedf_dec,eventDateHrs,.keep_all = TRUE) %>%\n", + " select(-eventDateHrs)\n", "\n", - "occurrencedf_dec$eventDateHrs <- NULL\n", + "# occurrencedf_dec$eventDateHrs <- NULL - added as pipe above\n", "\n", "occurrencedf_dec" ] @@ -4992,223 +4744,206 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": 38, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", "\n", "
A data.frame: 16 × 22A tibble: 16 × 22
atn_tbl.location_classatn_tbl.qartod_time_flagatn_tbl.qartod_speed_flagatn_tbl.qartod_location_flagatn_tbl.qartod_rollup_flagbasisOfRecordorganismIDeventDateoccurrenceIDdecimalLatitudedecimalLongitudegeodeticDatumeventIDkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDcoordinateUncertaintyInMetersdataGeneralizations
<chr><int><int><int><int><chr><chr><chr><chr><dbl><dbl><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr>
eventDatedecimalLatitudedecimalLongitudebasisOfRecordlocation_classqartod_time_flagqartod_speed_flagqartod_location_flagqartod_rollup_flagkingdomtaxonRankoccurrenceStatussexlifeStagescientificNamescientificNameIDorganismIDoccurrenceIDgeodeticDatumeventIDcoordinateUncertaintyInMetersdataGeneralizations
<chr><dbl><dbl><chr><chr><int><int><int><int><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><chr><dbl><chr>
nan1211HumanObservation 105838_great_white_shark2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark34.030-118.560EPSG:4326great_white shark_2009-09-23T00:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058380
1 1111MachineObservation105838_great_white_shark2009-09-27T17:58:00Z2009-09-27T17:58:00Z_0_great_white_shark34.033-118.547EPSG:4326great_white shark_2009-09-27T17:58:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-08T20:24:00Z2009-10-08T20:24:00Z_0_great_white_shark34.038-118.581EPSG:4326great_white shark_2009-10-08T20:24:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-15T11:05:00Z2009-10-15T11:05:00Z_0_great_white_shark33.995-118.678EPSG:4326great_white shark_2009-10-15T11:05:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
0 1111MachineObservation105838_great_white_shark2009-10-17T06:11:00Z2009-10-17T06:11:00Z_0_great_white_shark34.037-118.545EPSG:4326great_white shark_2009-10-17T06:11:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-17T09:00:00Z2009-10-17T09:00:00Z_0_great_white_shark34.026-118.534EPSG:4326great_white shark_2009-10-17T09:00:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
3 1111MachineObservation105838_great_white_shark2009-10-17T10:38:00Z2009-10-17T10:38:00Z_0_great_white_shark34.027-118.545EPSG:4326great_white shark_2009-10-17T10:38:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-18T08:48:00Z2009-10-18T08:48:00Z_0_great_white_shark34.039-118.548EPSG:4326great_white shark_2009-10-18T08:48:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500
2 1111MachineObservation105838_great_white_shark2009-10-18T10:26:00Z2009-10-18T10:26:00Z_0_great_white_shark34.031-118.541EPSG:4326great_white shark_2009-10-18T10:26:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-18T11:15:00Z2009-10-18T11:15:00Z_0_great_white_shark34.041-118.535EPSG:4326great_white shark_2009-10-18T11:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2 1111MachineObservation105838_great_white_shark2009-10-23T23:52:00Z2009-10-23T23:52:00Z_0_great_white_shark33.999-118.612EPSG:4326great_white shark_2009-10-23T23:52:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-24T00:06:00Z2009-10-24T00:06:00Z_0_great_white_shark34.002-118.604EPSG:4326great_white shark_2009-10-24T00:06:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
3 1111MachineObservation105838_great_white_shark2009-10-26T10:53:00Z2009-10-26T10:53:00Z_0_great_white_shark34.022-118.537EPSG:4326great_white shark_2009-10-26T10:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838250
1 1111MachineObservation105838_great_white_shark2009-10-27T16:21:00Z2009-10-27T16:21:00Z_0_great_white_shark34.010-118.524EPSG:4326great_white shark_2009-10-27T16:21:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:1058381500 first of 2 records
2 1111MachineObservation105838_great_white_shark2009-10-29T11:53:00Z2009-10-29T11:53:00Z_0_great_white_shark33.989-118.504EPSG:4326great_white shark_2009-10-29T11:53:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838500
0 1111MachineObservation105838_great_white_shark2009-10-31T21:15:00Z2009-10-31T21:15:00Z_0_great_white_shark34.045-118.530EPSG:4326great_white shark_2009-10-31T21:15:00ZAnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838>1500
2009-09-23T00:00:00Z34.030-118.560HumanObservation nan1211AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-23T00:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-23T00:00:00Z 0
2009-09-27T17:58:00Z34.033-118.547MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-09-27T17:58:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-09-27T17:58:00Z 1500
2009-10-08T20:24:00Z34.038-118.581MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-08T20:24:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-08T20:24:00Z 500
2009-10-15T11:05:00Z33.995-118.678MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-15T11:05:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-15T11:05:00Z10000
2009-10-17T06:11:00Z34.037-118.545MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T06:11:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T06:11:00Z10000
2009-10-17T09:00:00Z34.026-118.534MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T09:00:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T09:00:00Z 500
2009-10-17T10:38:00Z34.027-118.545MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-17T10:38:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-17T10:38:00Z 250
2009-10-18T08:48:00Z34.039-118.548MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T08:48:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T08:48:00Z 1500
2009-10-18T10:26:00Z34.031-118.541MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T10:26:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T10:26:00Z 500
2009-10-18T11:15:00Z34.041-118.535MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-18T11:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-18T11:15:00Z10000
2009-10-23T23:52:00Z33.999-118.612MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-23T23:52:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-23T23:52:00Z 500
2009-10-24T00:06:00Z34.002-118.604MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-24T00:06:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-24T00:06:00Z10000
2009-10-26T10:53:00Z34.022-118.537MachineObservation3 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-26T10:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-26T10:53:00Z 250
2009-10-27T16:21:00Z34.010-118.524MachineObservation1 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-27T16:21:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-27T16:21:00Z 1500first of 2 records
2009-10-29T11:53:00Z33.989-118.504MachineObservation2 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-29T11:53:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-29T11:53:00Z 500
2009-10-31T21:15:00Z34.045-118.530MachineObservation0 1111AnimaliaSpeciespresentmalejuvenileCarcharodon carchariasurn:lsid:marinespecies.org:taxname:105838105838_great_white_shark2009-10-31T21:15:00Z_0_great_white_sharkEPSG:4326great_white shark_2009-10-31T21:15:00Z10000
\n" ], "text/latex": [ - "A data.frame: 16 × 22\n", + "A tibble: 16 × 22\n", "\\begin{tabular}{llllllllllllllllllllll}\n", - " atn\\_tbl.location\\_class & atn\\_tbl.qartod\\_time\\_flag & atn\\_tbl.qartod\\_speed\\_flag & atn\\_tbl.qartod\\_location\\_flag & atn\\_tbl.qartod\\_rollup\\_flag & basisOfRecord & organismID & eventDate & occurrenceID & decimalLatitude & decimalLongitude & geodeticDatum & eventID & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & coordinateUncertaintyInMeters & dataGeneralizations\\\\\n", - " & & & & & & & & & & & & & & & & & & & & & \\\\\n", + " eventDate & decimalLatitude & decimalLongitude & basisOfRecord & location\\_class & qartod\\_time\\_flag & qartod\\_speed\\_flag & qartod\\_location\\_flag & qartod\\_rollup\\_flag & kingdom & taxonRank & occurrenceStatus & sex & lifeStage & scientificName & scientificNameID & organismID & occurrenceID & geodeticDatum & eventID & coordinateUncertaintyInMeters & dataGeneralizations\\\\\n", + " & & & & & & & & & & & & & & & & & & & & & \\\\\n", "\\hline\n", - "\t nan & 1 & 2 & 1 & 1 & HumanObservation & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 34.030 & -118.560 & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 0 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & 34.033 & -118.547 & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & 34.038 & -118.581 & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & 33.995 & -118.678 & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & 34.037 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & 34.026 & -118.534 & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & 34.027 & -118.545 & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & 34.039 & -118.548 & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & 34.031 & -118.541 & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & 34.041 & -118.535 & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & 33.999 & -118.612 & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & 34.002 & -118.604 & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", - "\t 3 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & 34.022 & -118.537 & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 250 & \\\\\n", - "\t 1 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & 34.010 & -118.524 & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 1500 & first of 2 records\\\\\n", - "\t 2 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & 33.989 & -118.504 & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 500 & \\\\\n", - "\t 0 & 1 & 1 & 1 & 1 & MachineObservation & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & 34.045 & -118.530 & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & >1500 & \\\\\n", + "\t 2009-09-23T00:00:00Z & 34.030 & -118.560 & HumanObservation & nan & 1 & 2 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-23T00:00:00Z & 0 & \\\\\n", + "\t 2009-09-27T17:58:00Z & 34.033 & -118.547 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-09-27T17:58:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-09-27T17:58:00Z & 1500 & \\\\\n", + "\t 2009-10-08T20:24:00Z & 34.038 & -118.581 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-08T20:24:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-08T20:24:00Z & 500 & \\\\\n", + "\t 2009-10-15T11:05:00Z & 33.995 & -118.678 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-15T11:05:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-15T11:05:00Z & 10000 & \\\\\n", + "\t 2009-10-17T06:11:00Z & 34.037 & -118.545 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T06:11:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T06:11:00Z & 10000 & \\\\\n", + "\t 2009-10-17T09:00:00Z & 34.026 & -118.534 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T09:00:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T09:00:00Z & 500 & \\\\\n", + "\t 2009-10-17T10:38:00Z & 34.027 & -118.545 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-17T10:38:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-17T10:38:00Z & 250 & \\\\\n", + "\t 2009-10-18T08:48:00Z & 34.039 & -118.548 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T08:48:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T08:48:00Z & 1500 & \\\\\n", + "\t 2009-10-18T10:26:00Z & 34.031 & -118.541 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T10:26:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T10:26:00Z & 500 & \\\\\n", + "\t 2009-10-18T11:15:00Z & 34.041 & -118.535 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-18T11:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-18T11:15:00Z & 10000 & \\\\\n", + "\t 2009-10-23T23:52:00Z & 33.999 & -118.612 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-23T23:52:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-23T23:52:00Z & 500 & \\\\\n", + "\t 2009-10-24T00:06:00Z & 34.002 & -118.604 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-24T00:06:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-24T00:06:00Z & 10000 & \\\\\n", + "\t 2009-10-26T10:53:00Z & 34.022 & -118.537 & MachineObservation & 3 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-26T10:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-26T10:53:00Z & 250 & \\\\\n", + "\t 2009-10-27T16:21:00Z & 34.010 & -118.524 & MachineObservation & 1 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-27T16:21:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-27T16:21:00Z & 1500 & first of 2 records\\\\\n", + "\t 2009-10-29T11:53:00Z & 33.989 & -118.504 & MachineObservation & 2 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-29T11:53:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-29T11:53:00Z & 500 & \\\\\n", + "\t 2009-10-31T21:15:00Z & 34.045 & -118.530 & MachineObservation & 0 & 1 & 1 & 1 & 1 & Animalia & Species & present & male & juvenile & Carcharodon carcharias & urn:lsid:marinespecies.org:taxname:105838 & 105838\\_great\\_white\\_shark & 2009-10-31T21:15:00Z\\_0\\_great\\_white\\_shark & EPSG:4326 & great\\_white shark\\_2009-10-31T21:15:00Z & 10000 & \\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A data.frame: 16 × 22\n", + "A tibble: 16 × 22\n", "\n", - "| atn_tbl.location_class <chr> | atn_tbl.qartod_time_flag <int> | atn_tbl.qartod_speed_flag <int> | atn_tbl.qartod_location_flag <int> | atn_tbl.qartod_rollup_flag <int> | basisOfRecord <chr> | organismID <chr> | eventDate <chr> | occurrenceID <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | geodeticDatum <chr> | eventID <chr> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | coordinateUncertaintyInMeters <chr> | dataGeneralizations <chr> |\n", + "| eventDate <chr> | decimalLatitude <dbl> | decimalLongitude <dbl> | basisOfRecord <chr> | location_class <chr> | qartod_time_flag <int> | qartod_speed_flag <int> | qartod_location_flag <int> | qartod_rollup_flag <int> | kingdom <chr> | taxonRank <chr> | occurrenceStatus <chr> | sex <chr> | lifeStage <chr> | scientificName <chr> | scientificNameID <chr> | organismID <chr> | occurrenceID <chr> | geodeticDatum <chr> | eventID <chr> | coordinateUncertaintyInMeters <dbl> | dataGeneralizations <chr> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", - "| nan | 1 | 2 | 1 | 1 | HumanObservation | 105838_great_white_shark | 2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 34.030 | -118.560 | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 0 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-09-27T17:58:00Z | 2009-09-27T17:58:00Z_0_great_white_shark | 34.033 | -118.547 | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-08T20:24:00Z | 2009-10-08T20:24:00Z_0_great_white_shark | 34.038 | -118.581 | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-15T11:05:00Z | 2009-10-15T11:05:00Z_0_great_white_shark | 33.995 | -118.678 | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T06:11:00Z | 2009-10-17T06:11:00Z_0_great_white_shark | 34.037 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T09:00:00Z | 2009-10-17T09:00:00Z_0_great_white_shark | 34.026 | -118.534 | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-17T10:38:00Z | 2009-10-17T10:38:00Z_0_great_white_shark | 34.027 | -118.545 | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T08:48:00Z | 2009-10-18T08:48:00Z_0_great_white_shark | 34.039 | -118.548 | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T10:26:00Z | 2009-10-18T10:26:00Z_0_great_white_shark | 34.031 | -118.541 | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-18T11:15:00Z | 2009-10-18T11:15:00Z_0_great_white_shark | 34.041 | -118.535 | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-23T23:52:00Z | 2009-10-23T23:52:00Z_0_great_white_shark | 33.999 | -118.612 | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-24T00:06:00Z | 2009-10-24T00:06:00Z_0_great_white_shark | 34.002 | -118.604 | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", - "| 3 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-26T10:53:00Z | 2009-10-26T10:53:00Z_0_great_white_shark | 34.022 | -118.537 | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 250 | |\n", - "| 1 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-27T16:21:00Z | 2009-10-27T16:21:00Z_0_great_white_shark | 34.010 | -118.524 | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 1500 | first of 2 records |\n", - "| 2 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-29T11:53:00Z | 2009-10-29T11:53:00Z_0_great_white_shark | 33.989 | -118.504 | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 500 | |\n", - "| 0 | 1 | 1 | 1 | 1 | MachineObservation | 105838_great_white_shark | 2009-10-31T21:15:00Z | 2009-10-31T21:15:00Z_0_great_white_shark | 34.045 | -118.530 | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | >1500 | |\n", + "| 2009-09-23T00:00:00Z | 34.030 | -118.560 | HumanObservation | nan | 1 | 2 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-23T00:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-23T00:00:00Z | 0 | |\n", + "| 2009-09-27T17:58:00Z | 34.033 | -118.547 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-09-27T17:58:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-09-27T17:58:00Z | 1500 | |\n", + "| 2009-10-08T20:24:00Z | 34.038 | -118.581 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-08T20:24:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-08T20:24:00Z | 500 | |\n", + "| 2009-10-15T11:05:00Z | 33.995 | -118.678 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-15T11:05:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-15T11:05:00Z | 10000 | |\n", + "| 2009-10-17T06:11:00Z | 34.037 | -118.545 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T06:11:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T06:11:00Z | 10000 | |\n", + "| 2009-10-17T09:00:00Z | 34.026 | -118.534 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T09:00:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T09:00:00Z | 500 | |\n", + "| 2009-10-17T10:38:00Z | 34.027 | -118.545 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-17T10:38:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-17T10:38:00Z | 250 | |\n", + "| 2009-10-18T08:48:00Z | 34.039 | -118.548 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T08:48:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T08:48:00Z | 1500 | |\n", + "| 2009-10-18T10:26:00Z | 34.031 | -118.541 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T10:26:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T10:26:00Z | 500 | |\n", + "| 2009-10-18T11:15:00Z | 34.041 | -118.535 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-18T11:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-18T11:15:00Z | 10000 | |\n", + "| 2009-10-23T23:52:00Z | 33.999 | -118.612 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-23T23:52:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-23T23:52:00Z | 500 | |\n", + "| 2009-10-24T00:06:00Z | 34.002 | -118.604 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-24T00:06:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-24T00:06:00Z | 10000 | |\n", + "| 2009-10-26T10:53:00Z | 34.022 | -118.537 | MachineObservation | 3 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-26T10:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-26T10:53:00Z | 250 | |\n", + "| 2009-10-27T16:21:00Z | 34.010 | -118.524 | MachineObservation | 1 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-27T16:21:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-27T16:21:00Z | 1500 | first of 2 records |\n", + "| 2009-10-29T11:53:00Z | 33.989 | -118.504 | MachineObservation | 2 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-29T11:53:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-29T11:53:00Z | 500 | |\n", + "| 2009-10-31T21:15:00Z | 34.045 | -118.530 | MachineObservation | 0 | 1 | 1 | 1 | 1 | Animalia | Species | present | male | juvenile | Carcharodon carcharias | urn:lsid:marinespecies.org:taxname:105838 | 105838_great_white_shark | 2009-10-31T21:15:00Z_0_great_white_shark | EPSG:4326 | great_white shark_2009-10-31T21:15:00Z | 10000 | |\n", "\n" ], "text/plain": [ - " atn_tbl.location_class atn_tbl.qartod_time_flag atn_tbl.qartod_speed_flag\n", - "1 nan 1 2 \n", - "2 1 1 1 \n", - "3 2 1 1 \n", - "4 0 1 1 \n", - "5 0 1 1 \n", - "6 2 1 1 \n", - "7 3 1 1 \n", - "8 1 1 1 \n", - "9 2 1 1 \n", - "10 0 1 1 \n", - "11 2 1 1 \n", - "12 0 1 1 \n", - "13 3 1 1 \n", - "14 1 1 1 \n", - "15 2 1 1 \n", - "16 0 1 1 \n", - " atn_tbl.qartod_location_flag atn_tbl.qartod_rollup_flag basisOfRecord \n", - "1 1 1 HumanObservation \n", - "2 1 1 MachineObservation\n", - "3 1 1 MachineObservation\n", - "4 1 1 MachineObservation\n", - "5 1 1 MachineObservation\n", - "6 1 1 MachineObservation\n", - "7 1 1 MachineObservation\n", - "8 1 1 MachineObservation\n", - "9 1 1 MachineObservation\n", - "10 1 1 MachineObservation\n", - "11 1 1 MachineObservation\n", - "12 1 1 MachineObservation\n", - "13 1 1 MachineObservation\n", - "14 1 1 MachineObservation\n", - "15 1 1 MachineObservation\n", - "16 1 1 MachineObservation\n", - " organismID eventDate \n", - "1 105838_great_white_shark 2009-09-23T00:00:00Z\n", - "2 105838_great_white_shark 2009-09-27T17:58:00Z\n", - "3 105838_great_white_shark 2009-10-08T20:24:00Z\n", - "4 105838_great_white_shark 2009-10-15T11:05:00Z\n", - "5 105838_great_white_shark 2009-10-17T06:11:00Z\n", - "6 105838_great_white_shark 2009-10-17T09:00:00Z\n", - "7 105838_great_white_shark 2009-10-17T10:38:00Z\n", - "8 105838_great_white_shark 2009-10-18T08:48:00Z\n", - "9 105838_great_white_shark 2009-10-18T10:26:00Z\n", - "10 105838_great_white_shark 2009-10-18T11:15:00Z\n", - "11 105838_great_white_shark 2009-10-23T23:52:00Z\n", - "12 105838_great_white_shark 2009-10-24T00:06:00Z\n", - "13 105838_great_white_shark 2009-10-26T10:53:00Z\n", - "14 105838_great_white_shark 2009-10-27T16:21:00Z\n", - "15 105838_great_white_shark 2009-10-29T11:53:00Z\n", - "16 105838_great_white_shark 2009-10-31T21:15:00Z\n", - " occurrenceID decimalLatitude decimalLongitude\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 34.030 -118.560 \n", - "2 2009-09-27T17:58:00Z_0_great_white_shark 34.033 -118.547 \n", - "3 2009-10-08T20:24:00Z_0_great_white_shark 34.038 -118.581 \n", - "4 2009-10-15T11:05:00Z_0_great_white_shark 33.995 -118.678 \n", - "5 2009-10-17T06:11:00Z_0_great_white_shark 34.037 -118.545 \n", - "6 2009-10-17T09:00:00Z_0_great_white_shark 34.026 -118.534 \n", - "7 2009-10-17T10:38:00Z_0_great_white_shark 34.027 -118.545 \n", - "8 2009-10-18T08:48:00Z_0_great_white_shark 34.039 -118.548 \n", - "9 2009-10-18T10:26:00Z_0_great_white_shark 34.031 -118.541 \n", - "10 2009-10-18T11:15:00Z_0_great_white_shark 34.041 -118.535 \n", - "11 2009-10-23T23:52:00Z_0_great_white_shark 33.999 -118.612 \n", - "12 2009-10-24T00:06:00Z_0_great_white_shark 34.002 -118.604 \n", - "13 2009-10-26T10:53:00Z_0_great_white_shark 34.022 -118.537 \n", - "14 2009-10-27T16:21:00Z_0_great_white_shark 34.010 -118.524 \n", - "15 2009-10-29T11:53:00Z_0_great_white_shark 33.989 -118.504 \n", - "16 2009-10-31T21:15:00Z_0_great_white_shark 34.045 -118.530 \n", - " geodeticDatum eventID kingdom taxonRank\n", - "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z Animalia Species \n", - "2 EPSG:4326 great_white shark_2009-09-27T17:58:00Z Animalia Species \n", - "3 EPSG:4326 great_white shark_2009-10-08T20:24:00Z Animalia Species \n", - "4 EPSG:4326 great_white shark_2009-10-15T11:05:00Z Animalia Species \n", - "5 EPSG:4326 great_white shark_2009-10-17T06:11:00Z Animalia Species \n", - "6 EPSG:4326 great_white shark_2009-10-17T09:00:00Z Animalia Species \n", - "7 EPSG:4326 great_white shark_2009-10-17T10:38:00Z Animalia Species \n", - "8 EPSG:4326 great_white shark_2009-10-18T08:48:00Z Animalia Species \n", - "9 EPSG:4326 great_white shark_2009-10-18T10:26:00Z Animalia Species \n", - "10 EPSG:4326 great_white shark_2009-10-18T11:15:00Z Animalia Species \n", - "11 EPSG:4326 great_white shark_2009-10-23T23:52:00Z Animalia Species \n", - "12 EPSG:4326 great_white shark_2009-10-24T00:06:00Z Animalia Species \n", - "13 EPSG:4326 great_white shark_2009-10-26T10:53:00Z Animalia Species \n", - "14 EPSG:4326 great_white shark_2009-10-27T16:21:00Z Animalia Species \n", - "15 EPSG:4326 great_white shark_2009-10-29T11:53:00Z Animalia Species \n", - "16 EPSG:4326 great_white shark_2009-10-31T21:15:00Z Animalia Species \n", - " occurrenceStatus sex lifeStage scientificName \n", - "1 present male juvenile Carcharodon carcharias\n", - "2 present male juvenile Carcharodon carcharias\n", - "3 present male juvenile Carcharodon carcharias\n", - "4 present male juvenile Carcharodon carcharias\n", - "5 present male juvenile Carcharodon carcharias\n", - "6 present male juvenile Carcharodon carcharias\n", - "7 present male juvenile Carcharodon carcharias\n", - "8 present male juvenile Carcharodon carcharias\n", - "9 present male juvenile Carcharodon carcharias\n", - "10 present male juvenile Carcharodon carcharias\n", - "11 present male juvenile Carcharodon carcharias\n", - "12 present male juvenile Carcharodon carcharias\n", - "13 present male juvenile Carcharodon carcharias\n", - "14 present male juvenile Carcharodon carcharias\n", - "15 present male juvenile Carcharodon carcharias\n", - "16 present male juvenile Carcharodon carcharias\n", - " scientificNameID coordinateUncertaintyInMeters\n", - "1 urn:lsid:marinespecies.org:taxname:105838 0 \n", - "2 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "3 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "4 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "5 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "6 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "7 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "8 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "9 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "10 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "11 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "12 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - "13 urn:lsid:marinespecies.org:taxname:105838 250 \n", - "14 urn:lsid:marinespecies.org:taxname:105838 1500 \n", - "15 urn:lsid:marinespecies.org:taxname:105838 500 \n", - "16 urn:lsid:marinespecies.org:taxname:105838 >1500 \n", - " dataGeneralizations\n", - "1 \n", - "2 \n", - "3 \n", - "4 \n", - "5 \n", - "6 \n", - "7 \n", - "8 \n", - "9 \n", - "10 \n", - "11 \n", - "12 \n", - "13 \n", - "14 first of 2 records\n", - "15 \n", - "16 " + " eventDate decimalLatitude decimalLongitude basisOfRecord \n", + "1 2009-09-23T00:00:00Z 34.030 -118.560 HumanObservation \n", + "2 2009-09-27T17:58:00Z 34.033 -118.547 MachineObservation\n", + "3 2009-10-08T20:24:00Z 34.038 -118.581 MachineObservation\n", + "4 2009-10-15T11:05:00Z 33.995 -118.678 MachineObservation\n", + "5 2009-10-17T06:11:00Z 34.037 -118.545 MachineObservation\n", + "6 2009-10-17T09:00:00Z 34.026 -118.534 MachineObservation\n", + "7 2009-10-17T10:38:00Z 34.027 -118.545 MachineObservation\n", + "8 2009-10-18T08:48:00Z 34.039 -118.548 MachineObservation\n", + "9 2009-10-18T10:26:00Z 34.031 -118.541 MachineObservation\n", + "10 2009-10-18T11:15:00Z 34.041 -118.535 MachineObservation\n", + "11 2009-10-23T23:52:00Z 33.999 -118.612 MachineObservation\n", + "12 2009-10-24T00:06:00Z 34.002 -118.604 MachineObservation\n", + "13 2009-10-26T10:53:00Z 34.022 -118.537 MachineObservation\n", + "14 2009-10-27T16:21:00Z 34.010 -118.524 MachineObservation\n", + "15 2009-10-29T11:53:00Z 33.989 -118.504 MachineObservation\n", + "16 2009-10-31T21:15:00Z 34.045 -118.530 MachineObservation\n", + " location_class qartod_time_flag qartod_speed_flag qartod_location_flag\n", + "1 nan 1 2 1 \n", + "2 1 1 1 1 \n", + "3 2 1 1 1 \n", + "4 0 1 1 1 \n", + "5 0 1 1 1 \n", + "6 2 1 1 1 \n", + "7 3 1 1 1 \n", + "8 1 1 1 1 \n", + "9 2 1 1 1 \n", + "10 0 1 1 1 \n", + "11 2 1 1 1 \n", + "12 0 1 1 1 \n", + "13 3 1 1 1 \n", + "14 1 1 1 1 \n", + "15 2 1 1 1 \n", + "16 0 1 1 1 \n", + " qartod_rollup_flag kingdom taxonRank occurrenceStatus sex lifeStage\n", + "1 1 Animalia Species present male juvenile \n", + "2 1 Animalia Species present male juvenile \n", + "3 1 Animalia Species present male juvenile \n", + "4 1 Animalia Species present male juvenile \n", + "5 1 Animalia Species present male juvenile \n", + "6 1 Animalia Species present male juvenile \n", + "7 1 Animalia Species present male juvenile \n", + "8 1 Animalia Species present male juvenile \n", + "9 1 Animalia Species present male juvenile \n", + "10 1 Animalia Species present male juvenile \n", + "11 1 Animalia Species present male juvenile \n", + "12 1 Animalia Species present male juvenile \n", + "13 1 Animalia Species present male juvenile \n", + "14 1 Animalia Species present male juvenile \n", + "15 1 Animalia Species present male juvenile \n", + "16 1 Animalia Species present male juvenile \n", + " scientificName scientificNameID \n", + "1 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "2 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "3 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "4 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "5 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "6 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "7 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "8 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "9 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "10 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "11 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "12 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "13 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "14 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "15 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + "16 Carcharodon carcharias urn:lsid:marinespecies.org:taxname:105838\n", + " organismID occurrenceID \n", + "1 105838_great_white_shark 2009-09-23T00:00:00Z_0_great_white_shark\n", + "2 105838_great_white_shark 2009-09-27T17:58:00Z_0_great_white_shark\n", + "3 105838_great_white_shark 2009-10-08T20:24:00Z_0_great_white_shark\n", + "4 105838_great_white_shark 2009-10-15T11:05:00Z_0_great_white_shark\n", + "5 105838_great_white_shark 2009-10-17T06:11:00Z_0_great_white_shark\n", + "6 105838_great_white_shark 2009-10-17T09:00:00Z_0_great_white_shark\n", + "7 105838_great_white_shark 2009-10-17T10:38:00Z_0_great_white_shark\n", + "8 105838_great_white_shark 2009-10-18T08:48:00Z_0_great_white_shark\n", + "9 105838_great_white_shark 2009-10-18T10:26:00Z_0_great_white_shark\n", + "10 105838_great_white_shark 2009-10-18T11:15:00Z_0_great_white_shark\n", + "11 105838_great_white_shark 2009-10-23T23:52:00Z_0_great_white_shark\n", + "12 105838_great_white_shark 2009-10-24T00:06:00Z_0_great_white_shark\n", + "13 105838_great_white_shark 2009-10-26T10:53:00Z_0_great_white_shark\n", + "14 105838_great_white_shark 2009-10-27T16:21:00Z_0_great_white_shark\n", + "15 105838_great_white_shark 2009-10-29T11:53:00Z_0_great_white_shark\n", + "16 105838_great_white_shark 2009-10-31T21:15:00Z_0_great_white_shark\n", + " geodeticDatum eventID \n", + "1 EPSG:4326 great_white shark_2009-09-23T00:00:00Z\n", + "2 EPSG:4326 great_white shark_2009-09-27T17:58:00Z\n", + "3 EPSG:4326 great_white shark_2009-10-08T20:24:00Z\n", + "4 EPSG:4326 great_white shark_2009-10-15T11:05:00Z\n", + "5 EPSG:4326 great_white shark_2009-10-17T06:11:00Z\n", + "6 EPSG:4326 great_white shark_2009-10-17T09:00:00Z\n", + "7 EPSG:4326 great_white shark_2009-10-17T10:38:00Z\n", + "8 EPSG:4326 great_white shark_2009-10-18T08:48:00Z\n", + "9 EPSG:4326 great_white shark_2009-10-18T10:26:00Z\n", + "10 EPSG:4326 great_white shark_2009-10-18T11:15:00Z\n", + "11 EPSG:4326 great_white shark_2009-10-23T23:52:00Z\n", + "12 EPSG:4326 great_white shark_2009-10-24T00:06:00Z\n", + "13 EPSG:4326 great_white shark_2009-10-26T10:53:00Z\n", + "14 EPSG:4326 great_white shark_2009-10-27T16:21:00Z\n", + "15 EPSG:4326 great_white shark_2009-10-29T11:53:00Z\n", + "16 EPSG:4326 great_white shark_2009-10-31T21:15:00Z\n", + " coordinateUncertaintyInMeters dataGeneralizations\n", + "1 0 \n", + "2 1500 \n", + "3 500 \n", + "4 10000 \n", + "5 10000 \n", + "6 500 \n", + "7 250 \n", + "8 1500 \n", + "9 500 \n", + "10 10000 \n", + "11 500 \n", + "12 10000 \n", + "13 250 \n", + "14 1500 first of 2 records\n", + "15 500 \n", + "16 10000 " ] }, "metadata": {}, @@ -5217,7 +4952,7 @@ ], "source": [ "# perform filter but don't save it.\n", - "filter(occurrencedf_dec, atn_tbl.qartod_rollup_flag == 1)\n", + "filter(occurrencedf_dec, qartod_rollup_flag == 1)\n", "\n", "#occurrencedf_dec <- filter(occurrencedf_dec, atn_tbl.qartod_rollup_flag == 1)\n", "\n", @@ -5233,7 +4968,7 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": 39, "metadata": {}, "outputs": [ { @@ -5253,8 +4988,8 @@ } ], "source": [ - "library('maps')\n", - "library('mapdata')\n", + "# library('maps') - loaded up top\n", + "# library('mapdata')\n", "\n", "# collect title from global attributes\n", "title <- metadata %>% dplyr::filter(variable == \"NC_GLOBAL\") %>% dplyr::filter(name == \"title\")\n", @@ -5268,13 +5003,14 @@ "w <- map_data( 'worldHires', ylim = ylim, xlim = xlim )\n", "\n", "z <- ggplot(occurrencedf_dec, aes( x = decimalLongitude, y = decimalLatitude )) +\n", - " geom_point( aes(colour = eventDate), size = 2.0) +\n", + " geom_point( aes(colour = eventDate), size = 2.0) + #SF: because of the changes I made above, eventDate is being seen as continuous here. Not sure if that's a problem.\n", " scale_shape_manual( values = c(19, 1) )\n", "\n", "z + geom_polygon(data = w, aes(x = long, y = lat, group = group), fill = 'grey80') + \n", " theme_bw() +\n", " coord_fixed(1.3, xlim = xlim, ylim = ylim) + \n", - " ggtitle( paste( strwrap(title$value, width = 150), collapse = \"\\n\") )" + " #ggtitle( paste( strwrap(title$value, width = 150), collapse = \"\\n\") ) - labs is a more mature and flexible function\n", + " labs(title = paste( strwrap(title$value, width = 150), collapse = \"\\n\"))" ] }, { @@ -5286,7 +5022,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": 40, "metadata": {}, "outputs": [ { @@ -5297,18 +5033,14 @@ ".list-inline>li {display: inline-block}\n", ".list-inline>li:not(:last-child)::after {content: \"\\00b7\"; padding: 0 .5ex}\n", "\n", - "
  1. 'basisOfRecord'
  2. 'organismID'
  3. 'eventDate'
  4. 'occurrenceID'
  5. 'decimalLatitude'
  6. 'decimalLongitude'
  7. 'geodeticDatum'
  8. 'eventID'
  9. 'kingdom'
  10. 'taxonRank'
  11. 'occurrenceStatus'
  12. 'sex'
  13. 'lifeStage'
  14. 'scientificName'
  15. 'scientificNameID'
  16. 'coordinateUncertaintyInMeters'
  17. 'dataGeneralizations'
\n" + "
  1. 'eventDate'
  2. 'decimalLatitude'
  3. 'decimalLongitude'
  4. 'basisOfRecord'
  5. 'kingdom'
  6. 'taxonRank'
  7. 'occurrenceStatus'
  8. 'sex'
  9. 'lifeStage'
  10. 'scientificName'
  11. 'scientificNameID'
  12. 'organismID'
  13. 'occurrenceID'
  14. 'geodeticDatum'
  15. 'eventID'
  16. 'coordinateUncertaintyInMeters'
  17. 'dataGeneralizations'
\n" ], "text/latex": [ "\\begin{enumerate*}\n", - "\\item 'basisOfRecord'\n", - "\\item 'organismID'\n", "\\item 'eventDate'\n", - "\\item 'occurrenceID'\n", "\\item 'decimalLatitude'\n", "\\item 'decimalLongitude'\n", - "\\item 'geodeticDatum'\n", - "\\item 'eventID'\n", + "\\item 'basisOfRecord'\n", "\\item 'kingdom'\n", "\\item 'taxonRank'\n", "\\item 'occurrenceStatus'\n", @@ -5316,40 +5048,44 @@ "\\item 'lifeStage'\n", "\\item 'scientificName'\n", "\\item 'scientificNameID'\n", + "\\item 'organismID'\n", + "\\item 'occurrenceID'\n", + "\\item 'geodeticDatum'\n", + "\\item 'eventID'\n", "\\item 'coordinateUncertaintyInMeters'\n", "\\item 'dataGeneralizations'\n", "\\end{enumerate*}\n" ], "text/markdown": [ - "1. 'basisOfRecord'\n", - "2. 'organismID'\n", - "3. 'eventDate'\n", - "4. 'occurrenceID'\n", - "5. 'decimalLatitude'\n", - "6. 'decimalLongitude'\n", - "7. 'geodeticDatum'\n", - "8. 'eventID'\n", - "9. 'kingdom'\n", - "10. 'taxonRank'\n", - "11. 'occurrenceStatus'\n", - "12. 'sex'\n", - "13. 'lifeStage'\n", - "14. 'scientificName'\n", - "15. 'scientificNameID'\n", + "1. 'eventDate'\n", + "2. 'decimalLatitude'\n", + "3. 'decimalLongitude'\n", + "4. 'basisOfRecord'\n", + "5. 'kingdom'\n", + "6. 'taxonRank'\n", + "7. 'occurrenceStatus'\n", + "8. 'sex'\n", + "9. 'lifeStage'\n", + "10. 'scientificName'\n", + "11. 'scientificNameID'\n", + "12. 'organismID'\n", + "13. 'occurrenceID'\n", + "14. 'geodeticDatum'\n", + "15. 'eventID'\n", "16. 'coordinateUncertaintyInMeters'\n", "17. 'dataGeneralizations'\n", "\n", "\n" ], "text/plain": [ - " [1] \"basisOfRecord\" \"organismID\" \n", - " [3] \"eventDate\" \"occurrenceID\" \n", - " [5] \"decimalLatitude\" \"decimalLongitude\" \n", - " [7] \"geodeticDatum\" \"eventID\" \n", - " [9] \"kingdom\" \"taxonRank\" \n", - "[11] \"occurrenceStatus\" \"sex\" \n", - "[13] \"lifeStage\" \"scientificName\" \n", - "[15] \"scientificNameID\" \"coordinateUncertaintyInMeters\"\n", + " [1] \"eventDate\" \"decimalLatitude\" \n", + " [3] \"decimalLongitude\" \"basisOfRecord\" \n", + " [5] \"kingdom\" \"taxonRank\" \n", + " [7] \"occurrenceStatus\" \"sex\" \n", + " [9] \"lifeStage\" \"scientificName\" \n", + "[11] \"scientificNameID\" \"organismID\" \n", + "[13] \"occurrenceID\" \"geodeticDatum\" \n", + "[15] \"eventID\" \"coordinateUncertaintyInMeters\"\n", "[17] \"dataGeneralizations\" " ] }, @@ -5358,12 +5094,21 @@ } ], "source": [ - "occurrencedf_dec$atn_tbl.location_class <- NULL\n", - "occurrencedf_dec$atn_tbl.qartod_time_flag <- NULL\n", - "occurrencedf_dec$atn_tbl.qartod_speed_flag <- NULL\n", - "occurrencedf_dec$atn_tbl.qartod_location_flag <- NULL\n", - "occurrencedf_dec$atn_tbl.qartod_rollup_flag <- NULL\n", - "\n", + "#occurrencedf_dec$atn_tbl.location_class <- NULL\n", + "#occurrencedf_dec$atn_tbl.qartod_time_flag <- NULL\n", + "#occurrencedf_dec$atn_tbl.qartod_speed_flag <- NULL\n", + "#occurrencedf_dec$atn_tbl.qartod_location_flag <- NULL\n", + "#occurrencedf_dec$atn_tbl.qartod_rollup_flag <- NULL\n", + "\n", + "occurrencedf_dec <- occurrencedf_dec %>%\n", + " select(\n", + " -c(location_class,\n", + " qartod_time_flag,\n", + " qartod_speed_flag,\n", + " qartod_location_flag,\n", + " qartod_rollup_flag\n", + " ))\n", + " \n", "names(occurrencedf_dec)" ] }, @@ -5376,11 +5121,11 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": 41, "metadata": {}, "outputs": [], "source": [ - "tag_id <- metadata %>% dplyr::filter(variable == \"NC_GLOBAL\") %>% dplyr::filter(name == \"ptt_id\")\n", + "tag_id <- metadata %>% dplyr::filter(variable == \"NC_GLOBAL\" & name == \"ptt_id\")\n", "\n", "file_name_occur <- paste('atn_',tag_id$value,'_occurrence.csv', sep = \"\")\n", "\n", @@ -5418,7 +5163,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": 42, "metadata": {}, "outputs": [ { @@ -5574,10 +5319,10 @@ ], "source": [ "# Use ncdf4 to get other variables\n", - "library(ncdf4)\n", - "library(tidyverse)\n", + "# library(ncdf4) - loaded above\n", + "# library(tidyverse)\n", "\n", - "nc <- nc_open(fname)\n", + "#nc <- nc_open(fname) - opened above\n", "\n", "var_names <- tibble(name = attributes(nc$var)$names)\n", "\n", @@ -5587,7 +5332,7 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": 43, "metadata": {}, "outputs": [ { @@ -5778,76 +5523,7 @@ }, { "cell_type": "code", - "execution_count": 30, - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
\n", - "\t
$`_FillValue`
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NaN
\n", - "\t
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\n", - "\t
$long_name
\n", - "\t\t
'mass of the animal as measured or estimated at deployment'
\n", - "\t
$animal_weight
\n", - "\t\t
'Not provided'
\n", - "\t
$coverage_content_type
\n", - "\t\t
'referenceInformation'
\n", - "
\n" - ], - "text/latex": [ - "\\begin{description}\n", - "\\item[\\$`\\_FillValue`] NaN\n", - "\\item[\\$units] 'kg'\n", - "\\item[\\$long\\_name] 'mass of the animal as measured or estimated at deployment'\n", - "\\item[\\$animal\\_weight] 'Not provided'\n", - "\\item[\\$coverage\\_content\\_type] 'referenceInformation'\n", - "\\end{description}\n" - ], - "text/markdown": [ - "$`_FillValue`\n", - ": NaN\n", - "$units\n", - ": 'kg'\n", - "$long_name\n", - ": 'mass of the animal as measured or estimated at deployment'\n", - "$animal_weight\n", - ": 'Not provided'\n", - "$coverage_content_type\n", - ": 'referenceInformation'\n", - "\n", - "\n" - ], - "text/plain": [ - "$`_FillValue`\n", - "[1] NaN\n", - "\n", - "$units\n", - "[1] \"kg\"\n", - "\n", - "$long_name\n", - "[1] \"mass of the animal as measured or estimated at deployment\"\n", - "\n", - "$animal_weight\n", - "[1] \"Not provided\"\n", - "\n", - "$coverage_content_type\n", - "[1] \"referenceInformation\"\n" - ] - }, - "metadata": {}, - "output_type": "display_data" - } - ], - "source": [ - "ncatt_get(nc, 'animal_weight')" - ] - }, - { - "cell_type": "code", - "execution_count": 31, + "execution_count": 44, "metadata": {}, "outputs": [ { @@ -5875,64 +5551,50 @@ }, { "cell_type": "code", - "execution_count": 32, + "execution_count": 47, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\n", - "\n", + "\n", "\n", - "\t\n", - "\t\n", + "\t\n", + "\t\n", "\n", "\n", - "\t\n", - "\t\n", - "\t\n", + "\t\n", "\n", "
A tibble: 3 × 7A data.frame: 1 × 7
organismIDmeasurementValuemeasurementTypemeasurementUnitmeasurementMethodeventIDoccurrenceID
<chr><dbl><chr><chr><chr><chr><chr>
organismIDeventIDoccurrenceIDmeasurementValuemeasurementTypemeasurementUnitmeasurementMethod
<chr><chr><chr><dbl><chr><chr><chr>
105838_great_white_sharkNaNmass of the animal as measured or estimated at deployment kgNA great_white shark_2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark
105838_great_white_shark213length of the animal as measured or estimated at deploymentcmtotal lengthgreat_white shark_2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark
105838_great_white_sharkNaNlength of the animal as measured or estimated at deployment Not providedgreat_white shark_2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark
105838_great_white_sharkgreat_white shark_2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark213length of the animal as measured or estimated at deploymentcmtotal length
\n" ], "text/latex": [ - "A tibble: 3 × 7\n", + "A data.frame: 1 × 7\n", "\\begin{tabular}{lllllll}\n", - " organismID & measurementValue & measurementType & measurementUnit & measurementMethod & eventID & occurrenceID\\\\\n", - " & & & & & & \\\\\n", + " organismID & eventID & occurrenceID & measurementValue & measurementType & measurementUnit & measurementMethod\\\\\n", + " & & & & & & \\\\\n", "\\hline\n", - "\t 105838\\_great\\_white\\_shark & NaN & mass of the animal as measured or estimated at deployment & kg & NA & great\\_white shark\\_2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark\\\\\n", - "\t 105838\\_great\\_white\\_shark & 213 & length of the animal as measured or estimated at deployment & cm & total length & great\\_white shark\\_2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark\\\\\n", - "\t 105838\\_great\\_white\\_shark & NaN & length of the animal as measured or estimated at deployment & & Not provided & great\\_white shark\\_2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark\\\\\n", + "\t 105838\\_great\\_white\\_shark & great\\_white shark\\_2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 213 & length of the animal as measured or estimated at deployment & cm & total length\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", - "A tibble: 3 × 7\n", + "A data.frame: 1 × 7\n", "\n", - "| organismID <chr> | measurementValue <dbl> | measurementType <chr> | measurementUnit <chr> | measurementMethod <chr> | eventID <chr> | occurrenceID <chr> |\n", + "| organismID <chr> | eventID <chr> | occurrenceID <chr> | measurementValue <dbl> | measurementType <chr> | measurementUnit <chr> | measurementMethod <chr> |\n", "|---|---|---|---|---|---|---|\n", - "| 105838_great_white_shark | NaN | mass of the animal as measured or estimated at deployment | kg | NA | great_white shark_2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark |\n", - "| 105838_great_white_shark | 213 | length of the animal as measured or estimated at deployment | cm | total length | great_white shark_2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark |\n", - "| 105838_great_white_shark | NaN | length of the animal as measured or estimated at deployment | | Not provided | great_white shark_2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark |\n", + "| 105838_great_white_shark | great_white shark_2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 213 | length of the animal as measured or estimated at deployment | cm | total length |\n", "\n" ], "text/plain": [ - " organismID measurementValue\n", - "1 105838_great_white_shark NaN \n", - "2 105838_great_white_shark 213 \n", - "3 105838_great_white_shark NaN \n", + " organismID eventID \n", + "1 105838_great_white_shark great_white shark_2009-09-23T00:00:00Z\n", + " occurrenceID measurementValue\n", + "1 2009-09-23T00:00:00Z_0_great_white_shark 213 \n", " measurementType measurementUnit\n", - "1 mass of the animal as measured or estimated at deployment kg \n", - "2 length of the animal as measured or estimated at deployment cm \n", - "3 length of the animal as measured or estimated at deployment \n", - " measurementMethod eventID \n", - "1 NA great_white shark_2009-09-23T00:00:00Z\n", - "2 total length great_white shark_2009-09-23T00:00:00Z\n", - "3 Not provided great_white shark_2009-09-23T00:00:00Z\n", - " occurrenceID \n", - "1 2009-09-23T00:00:00Z_0_great_white_shark\n", - "2 2009-09-23T00:00:00Z_0_great_white_shark\n", - "3 2009-09-23T00:00:00Z_0_great_white_shark" + "1 length of the animal as measured or estimated at deployment cm \n", + " measurementMethod\n", + "1 total length " ] }, "metadata": {}, @@ -5940,44 +5602,71 @@ } ], "source": [ - "# Measurement or Fact extension\n", - "# Need to find the occurrence where basisOfRecord == HumanObservation, then pull the organism.\n", - "#filter(occurrecedf, basisOfRecord == 'HumanObservation')\n", - "\n", - "# eMoF will only contain records when basis of record is a human observation. \n", - "# In other words, when someone saw and took measurements of the animal we want\n", - "# to preserve those observations in the emof extension.\n", - "emofdf <- tibble('organismID' = filter(occurrencedf, basisOfRecord == 'HumanObservation')$organismID)\n", - "\n", - "\n", - "# add animal_age, animal_length, animal_leng_2\n", - "emofdf$measurementValue <- ncvar_get( nc, 'animal_weight')\n", - "emofdf$measurementType <- ncatt_get( nc, 'animal_weight')$long_name\n", - "emofdf$measurementUnit <- ncatt_get( nc, 'animal_weight')$units\n", - "emofdf$measurementMethod <- NA #ncatt_get( nc, 'animal_weight')$long_name\n", - "\n", - "# length\n", - "emofdf2 <- tibble('organismID' = unique(occurrencedf$organismID))\n", - "emofdf2$measurementValue <- ncvar_get( nc, 'animal_length')\n", - "emofdf2$measurementType <- ncatt_get( nc, 'animal_length')$long_name\n", - "emofdf2$measurementUnit <- ncatt_get( nc, 'animal_length')$units\n", - "emofdf2$measurementMethod <- ncatt_get( nc, 'animal_length')$animal_length_type\n", - "\n", - "# length2\n", - "emofdf3 <- tibble('organismID' = unique(occurrencedf$organismID))\n", - "emofdf3$measurementValue <- ncvar_get( nc, 'animal_length_2')\n", - "emofdf3$measurementType <- ncatt_get( nc, 'animal_length_2')$long_name\n", - "emofdf3$measurementUnit <- ncatt_get( nc, 'animal_length_2')$units\n", - "emofdf3$measurementMethod <- ncatt_get( nc, 'animal_length_2')$animal_length_2_type\n", - "\n", - "emofdf <- bind_rows(emofdf, emofdf2, emofdf3)\n", - "# mofdf$measurementValue <- ncvar_get( nc, 'animal_length')\n", - "# mofdf$measurementType <- ncatt_get( nc, 'animal_length')$animal_length_type\n", - "# mofdf$measurementUnit <- ncatt_get( nc, 'animal_length')$units\n", - "# mofdf$measurementMethod <- ncatt_get( nc, 'animal_length')$long_name\n", - "\n", - "emofdf$eventID <- filter(occurrencedf, basisOfRecord == 'HumanObservation')$eventID # HumanObservation is the emof\n", - "emofdf$occurrenceID <- filter(occurrencedf, basisOfRecord == 'HumanObservation')$occurrenceID # HumanObservation is the emof observations\n", + "# # Measurement or Fact extension\n", + "# # Need to find the occurrence where basisOfRecord == HumanObservation, then pull the organism.\n", + "# #filter(occurrecedf, basisOfRecord == 'HumanObservation')\n", + "# \n", + "# # eMoF will only contain records when basis of record is a human observation. \n", + "# # In other words, when someone saw and took measurements of the animal we want\n", + "# # to preserve those observations in the emof extension.\n", + "# emofdf <- tibble('organismID' = filter(occurrencedf, basisOfRecord == 'HumanObservation')$organismID)\n", + "# \n", + "# \n", + "# # add animal_age, animal_length, animal_leng_2\n", + "# emofdf$measurementValue <- ncvar_get( nc, 'animal_weight')\n", + "# emofdf$measurementType <- ncatt_get( nc, 'animal_weight')$long_name\n", + "# emofdf$measurementUnit <- ncatt_get( nc, 'animal_weight')$units\n", + "# emofdf$measurementMethod <- NA #ncatt_get( nc, 'animal_weight')$long_name\n", + "# \n", + "# # length\n", + "# emofdf2 <- tibble('organismID' = unique(occurrencedf$organismID))\n", + "# emofdf2$measurementValue <- ncvar_get( nc, 'animal_length')\n", + "# emofdf2$measurementType <- ncatt_get( nc, 'animal_length')$long_name\n", + "# emofdf2$measurementUnit <- ncatt_get( nc, 'animal_length')$units\n", + "# emofdf2$measurementMethod <- ncatt_get( nc, 'animal_length')$animal_length_type\n", + "# \n", + "# # length2\n", + "# emofdf3 <- tibble('organismID' = unique(occurrencedf$organismID))\n", + "# emofdf3$measurementValue <- ncvar_get( nc, 'animal_length_2')\n", + "# emofdf3$measurementType <- ncatt_get( nc, 'animal_length_2')$long_name\n", + "# emofdf3$measurementUnit <- ncatt_get( nc, 'animal_length_2')$units\n", + "# emofdf3$measurementMethod <- ncatt_get( nc, 'animal_length_2')$animal_length_2_type\n", + "# \n", + "# emofdf <- bind_rows(emofdf, emofdf2, emofdf3)\n", + "# # mofdf$measurementValue <- ncvar_get( nc, 'animal_length')\n", + "# # mofdf$measurementType <- ncatt_get( nc, 'animal_length')$animal_length_type\n", + "# # mofdf$measurementUnit <- ncatt_get( nc, 'animal_length')$units\n", + "# # mofdf$measurementMethod <- ncatt_get( nc, 'animal_length')$long_name\n", + "# \n", + "# emofdf$eventID <- filter(occurrencedf, basisOfRecord == 'HumanObservation')$eventID # HumanObservation is the emof\n", + "# emofdf$occurrenceID <- filter(occurrencedf, basisOfRecord == 'HumanObservation')$occurrenceID # HumanObservation is the emof observations\n", + "# \n", + "# emofdf\n", + "\n", + "#### The above works fine. Here is a slightly more succint way, where you could also make more efficient by parsing patterns if they exist. \n", + "# In this case it's overkill, but it's a good chance to demonstrate it.\n", + "\n", + "emof_data <- var_names %>%\n", + " filter(str_starts(name, pattern = \"animal_[lw]e\")) %>%\n", + " pull(name) %>%\n", + " purrr::map_df(function(x) {\n", + "\n", + " method <- str_detect(names(ncatt_get( nc, x)),\n", + " paste0(x,'_type'))\n", + " \n", + " list(measurementValue = ncvar_get( nc, x),\n", + " measurementType = ncatt_get( nc, x)$long_name,\n", + " measurementUnit = ncatt_get( nc, x)$units,\n", + " measurementMethod = ncatt_get( nc, x)[[paste0(x,'_type')]])\n", + " }) %>%\n", + " \n", + " filter(measurementValue != \"NaN\")\n", + "\n", + "\n", + "emofdf <- occurrencedf %>%\n", + " filter(basisOfRecord == 'HumanObservation') %>%\n", + " select(organismID, eventID, occurrenceID) %>%\n", + " cbind(emof_data)\n", "\n", "emofdf" ] @@ -6042,7 +5731,7 @@ } ], "source": [ - "emofdf <- filter(emofdf, measurementValue != \"NaN\")\n", + "emofdf <- \n", "\n", "emofdf" ] @@ -6340,9 +6029,7 @@ { "cell_type": "code", "execution_count": 48, - "metadata": { - "scrolled": false - }, + "metadata": {}, "outputs": [ { "ename": "ERROR", @@ -6903,5 +6590,5 @@ } }, "nbformat": 4, - "nbformat_minor": 1 + "nbformat_minor": 4 } diff --git a/jupyterbook/content/code_gallery/data_management_notebooks/atn_45866_occurrence.csv b/jupyterbook/content/code_gallery/data_management_notebooks/atn_45866_occurrence.csv index d0e4a456..b4262e8e 100644 --- a/jupyterbook/content/code_gallery/data_management_notebooks/atn_45866_occurrence.csv +++ b/jupyterbook/content/code_gallery/data_management_notebooks/atn_45866_occurrence.csv @@ -1,18 +1,18 @@ -"basisOfRecord","organismID","eventDate","occurrenceID","decimalLatitude","decimalLongitude","geodeticDatum","eventID","kingdom","taxonRank","occurrenceStatus","sex","lifeStage","scientificName","scientificNameID","coordinateUncertaintyInMeters","dataGeneralizations" -"HumanObservation","105838_great_white_shark","2009-09-23T00:00:00Z","2009-09-23T00:00:00Z_0_great_white_shark",34.03,-118.56,"EPSG:4326","great_white shark_2009-09-23T00:00:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","0","" -"MachineObservation","105838_great_white_shark","2009-09-25T11:09:00Z","2009-09-25T11:09:00Z_0_great_white_shark",34.024,-118.556,"EPSG:4326","great_white shark_2009-09-25T11:09:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","1500","first of 2 records" -"MachineObservation","105838_great_white_shark","2009-09-27T17:58:00Z","2009-09-27T17:58:00Z_0_great_white_shark",34.033,-118.547,"EPSG:4326","great_white shark_2009-09-27T17:58:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","1500","" -"MachineObservation","105838_great_white_shark","2009-10-08T20:24:00Z","2009-10-08T20:24:00Z_0_great_white_shark",34.038,-118.581,"EPSG:4326","great_white shark_2009-10-08T20:24:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","500","" -"MachineObservation","105838_great_white_shark","2009-10-15T11:05:00Z","2009-10-15T11:05:00Z_0_great_white_shark",33.995,-118.678,"EPSG:4326","great_white shark_2009-10-15T11:05:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",">1500","" -"MachineObservation","105838_great_white_shark","2009-10-17T06:11:00Z","2009-10-17T06:11:00Z_0_great_white_shark",34.037,-118.545,"EPSG:4326","great_white shark_2009-10-17T06:11:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",">1500","" -"MachineObservation","105838_great_white_shark","2009-10-17T09:00:00Z","2009-10-17T09:00:00Z_0_great_white_shark",34.026,-118.534,"EPSG:4326","great_white shark_2009-10-17T09:00:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","500","" -"MachineObservation","105838_great_white_shark","2009-10-17T10:38:00Z","2009-10-17T10:38:00Z_0_great_white_shark",34.027,-118.545,"EPSG:4326","great_white shark_2009-10-17T10:38:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","250","" -"MachineObservation","105838_great_white_shark","2009-10-18T08:48:00Z","2009-10-18T08:48:00Z_0_great_white_shark",34.039,-118.548,"EPSG:4326","great_white shark_2009-10-18T08:48:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","1500","" -"MachineObservation","105838_great_white_shark","2009-10-18T10:26:00Z","2009-10-18T10:26:00Z_0_great_white_shark",34.031,-118.541,"EPSG:4326","great_white shark_2009-10-18T10:26:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","500","" -"MachineObservation","105838_great_white_shark","2009-10-18T11:15:00Z","2009-10-18T11:15:00Z_0_great_white_shark",34.041,-118.535,"EPSG:4326","great_white shark_2009-10-18T11:15:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",">1500","" -"MachineObservation","105838_great_white_shark","2009-10-23T23:52:00Z","2009-10-23T23:52:00Z_0_great_white_shark",33.999,-118.612,"EPSG:4326","great_white shark_2009-10-23T23:52:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","500","" -"MachineObservation","105838_great_white_shark","2009-10-24T00:06:00Z","2009-10-24T00:06:00Z_0_great_white_shark",34.002,-118.604,"EPSG:4326","great_white shark_2009-10-24T00:06:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",">1500","" -"MachineObservation","105838_great_white_shark","2009-10-26T10:53:00Z","2009-10-26T10:53:00Z_0_great_white_shark",34.022,-118.537,"EPSG:4326","great_white shark_2009-10-26T10:53:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","250","" -"MachineObservation","105838_great_white_shark","2009-10-27T16:21:00Z","2009-10-27T16:21:00Z_0_great_white_shark",34.01,-118.524,"EPSG:4326","great_white shark_2009-10-27T16:21:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","1500","first of 2 records" -"MachineObservation","105838_great_white_shark","2009-10-29T11:53:00Z","2009-10-29T11:53:00Z_0_great_white_shark",33.989,-118.504,"EPSG:4326","great_white shark_2009-10-29T11:53:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","500","" -"MachineObservation","105838_great_white_shark","2009-10-31T21:15:00Z","2009-10-31T21:15:00Z_0_great_white_shark",34.045,-118.53,"EPSG:4326","great_white shark_2009-10-31T21:15:00Z","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",">1500","" +"eventDate","decimalLatitude","decimalLongitude","basisOfRecord","kingdom","taxonRank","occurrenceStatus","sex","lifeStage","scientificName","scientificNameID","organismID","occurrenceID","geodeticDatum","eventID","coordinateUncertaintyInMeters","dataGeneralizations" +"2009-09-23T00:00:00Z",34.03,-118.56,"HumanObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-09-23T00:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-23T00:00:00Z",0,"" +"2009-09-25T11:09:00Z",34.024,-118.556,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-09-25T11:09:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-25T11:09:00Z",1500,"first of 2 records" +"2009-09-27T17:58:00Z",34.033,-118.547,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-09-27T17:58:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-27T17:58:00Z",1500,"" +"2009-10-08T20:24:00Z",34.038,-118.581,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-08T20:24:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-08T20:24:00Z",500,"" +"2009-10-15T11:05:00Z",33.995,-118.678,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-15T11:05:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-15T11:05:00Z",10000,"" +"2009-10-17T06:11:00Z",34.037,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-17T06:11:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T06:11:00Z",10000,"" +"2009-10-17T09:00:00Z",34.026,-118.534,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-17T09:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T09:00:00Z",500,"" +"2009-10-17T10:38:00Z",34.027,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-17T10:38:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T10:38:00Z",250,"" +"2009-10-18T08:48:00Z",34.039,-118.548,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-18T08:48:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T08:48:00Z",1500,"" +"2009-10-18T10:26:00Z",34.031,-118.541,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-18T10:26:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T10:26:00Z",500,"" +"2009-10-18T11:15:00Z",34.041,-118.535,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-18T11:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T11:15:00Z",10000,"" +"2009-10-23T23:52:00Z",33.999,-118.612,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-23T23:52:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-23T23:52:00Z",500,"" +"2009-10-24T00:06:00Z",34.002,-118.604,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-24T00:06:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-24T00:06:00Z",10000,"" +"2009-10-26T10:53:00Z",34.022,-118.537,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-26T10:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-26T10:53:00Z",250,"" +"2009-10-27T16:21:00Z",34.01,-118.524,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-27T16:21:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-27T16:21:00Z",1500,"first of 2 records" +"2009-10-29T11:53:00Z",33.989,-118.504,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-29T11:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-29T11:53:00Z",500,"" +"2009-10-31T21:15:00Z",34.045,-118.53,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838","105838_great_white_shark","2009-10-31T21:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-31T21:15:00Z",10000,"" From ef3b1a3e1d28e9c7cad2d08eebb77836f27c95a6 Mon Sep 17 00:00:00 2001 From: "Formel, Stephen Killfoile" Date: Mon, 13 Nov 2023 15:43:07 -0600 Subject: [PATCH 2/2] code cleanup and commenting of great white R notebook --- .../DRAFT-R-netCDF2DwC.ipynb | 107 +++++++++--------- 1 file changed, 51 insertions(+), 56 deletions(-) diff --git a/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb b/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb index 61709c7a..2c3f62db 100644 --- a/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb +++ b/jupyterbook/content/code_gallery/data_management_notebooks/DRAFT-R-netCDF2DwC.ipynb @@ -3364,7 +3364,10 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now start working through the crosswalk." + "Now start working through the crosswalk. A few thoughts about some of the functions we use:\n", + "\n", + "1. `case_when` is a [function from dplyr](https://dplyr.tidyverse.org/reference/case_when.html) that is essentially a 'vectorized' ifelse function. The take-home is that it plays nice with other `tidyverse` functions, like `mutate` and IMO is a bit more readable than a complex ifelse statement.\n", + "2. `rename` is another nice dplyr function for renaming columns. It workes well following `mutate` because you can see the mutation applied to a column and then the column renamed, rather than a complex creation of a new column and dropping of the old column." ] }, { @@ -3759,10 +3762,10 @@ " qartod_location_flag,\n", " qartod_rollup_flag\n", " ) %>%\n", - " mutate( # add and mutate columns\n", + " mutate( # add and mutate columns.\n", " \n", " type = case_when(type == 'User' ~ 'HumanObservation',\n", - " type == 'Argos' ~ 'MachineObservation'),\n", + " type == 'Argos' ~ 'MachineObservation'),\n", " time = format(time, '%Y-%m-%dT%H:%M:%SZ'),\n", " kingdom = metadata %>% dplyr::filter(variable == \"animal\" & name == \"kingdom\") %>% pull(value) %>% unlist(use.names = FALSE),\n", " taxonRank = metadata %>% dplyr::filter(variable == \"animal\" & name == \"rank\") %>% pull(value) %>% unlist(use.names = FALSE),\n", @@ -4152,7 +4155,7 @@ " location_class == '3' ~ 250,\n", " location_class == '2' ~ 500,\n", " location_class == '1' ~ 1500,\n", - " location_class == '0' ~ 1e4)\n", + " location_class == '0' ~ 1e4) # https://github.com/ioos/bio_data_guide/issues/145#issuecomment-1805739244\n", " ) %>% \n", " arrange(eventDate) # arrange by increasing date\n", "\n", @@ -5549,56 +5552,47 @@ "filter(occurrencedf, basisOfRecord == 'HumanObservation')$organismID" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### Extracting variables for Extended Measurement Or Fact (eMOF)\n", + "\n", + "Here there are two approaches to transforming a variable to the eMOF Darwin Core extension. The goal is to collapse the measurement name, value, unit, related identifiers and remarks into a generalized long format that can be linked to occurrences and events. For more info see:\n", + "\n", + "1. [The OBIS manual](https://manual.obis.org/format_emof.html)\n", + "2. The [Marine Biological Data Mobilization Workshop 2023](https://ioos.github.io/bio_mobilization_workshop/04-create-schema/index.html) (SF:Not sure if it's cool to reference the workshop like this)\n", + "\n", + "The first several lines of the below code show an example of pulling out the variable attributes and individually mapping them to the eMOF terms. However, this can be done more efficiently (although less readable) via this chunk of code:\n", + "\n", + "```\n", + "# Supply vector of variable names\n", + "c(\"animal_length\",\n", + " \"animal_length_2\",\n", + " \"animal_weight\") %>%\n", + "\n", + " # Create a named list of the variable attributes and convert it into a data frame, for each name in the above vector.\n", + " purrr::map_df(function(x) {\n", + " list(measurementValue = ncvar_get( nc, x),\n", + " measurementType = ncatt_get( nc, x)$long_name,\n", + " measurementUnit = ncatt_get( nc, x)$units,\n", + " measurementMethod = ncatt_get( nc, x)[[paste0(x,'_type')]])\n", + " })\n", + "```" + ] + }, { "cell_type": "code", - "execution_count": 47, + "execution_count": 3, "metadata": {}, "outputs": [ { - "data": { - "text/html": [ - "\n", - "\n", - "\n", - "\t\n", - "\t\n", - "\n", - "\n", - "\t\n", - "\n", - "
A data.frame: 1 × 7
organismIDeventIDoccurrenceIDmeasurementValuemeasurementTypemeasurementUnitmeasurementMethod
<chr><chr><chr><dbl><chr><chr><chr>
105838_great_white_sharkgreat_white shark_2009-09-23T00:00:00Z2009-09-23T00:00:00Z_0_great_white_shark213length of the animal as measured or estimated at deploymentcmtotal length
\n" - ], - "text/latex": [ - "A data.frame: 1 × 7\n", - "\\begin{tabular}{lllllll}\n", - " organismID & eventID & occurrenceID & measurementValue & measurementType & measurementUnit & measurementMethod\\\\\n", - " & & & & & & \\\\\n", - "\\hline\n", - "\t 105838\\_great\\_white\\_shark & great\\_white shark\\_2009-09-23T00:00:00Z & 2009-09-23T00:00:00Z\\_0\\_great\\_white\\_shark & 213 & length of the animal as measured or estimated at deployment & cm & total length\\\\\n", - "\\end{tabular}\n" - ], - "text/markdown": [ - "\n", - "A data.frame: 1 × 7\n", - "\n", - "| organismID <chr> | eventID <chr> | occurrenceID <chr> | measurementValue <dbl> | measurementType <chr> | measurementUnit <chr> | measurementMethod <chr> |\n", - "|---|---|---|---|---|---|---|\n", - "| 105838_great_white_shark | great_white shark_2009-09-23T00:00:00Z | 2009-09-23T00:00:00Z_0_great_white_shark | 213 | length of the animal as measured or estimated at deployment | cm | total length |\n", - "\n" - ], - "text/plain": [ - " organismID eventID \n", - "1 105838_great_white_shark great_white shark_2009-09-23T00:00:00Z\n", - " occurrenceID measurementValue\n", - "1 2009-09-23T00:00:00Z_0_great_white_shark 213 \n", - " measurementType measurementUnit\n", - "1 length of the animal as measured or estimated at deployment cm \n", - " measurementMethod\n", - "1 total length " - ] - }, - "metadata": {}, - "output_type": "display_data" + "ename": "ERROR", + "evalue": "Error in var_names %>% filter(str_starts(name, pattern = \"animal_[lw]e\")) %>% : could not find function \"%>%\"\n", + "output_type": "error", + "traceback": [ + "Error in var_names %>% filter(str_starts(name, pattern = \"animal_[lw]e\")) %>% : could not find function \"%>%\"\nTraceback:\n" + ] } ], "source": [ @@ -5646,14 +5640,15 @@ "#### The above works fine. Here is a slightly more succint way, where you could also make more efficient by parsing patterns if they exist. \n", "# In this case it's overkill, but it's a good chance to demonstrate it.\n", "\n", - "emof_data <- var_names %>%\n", - " filter(str_starts(name, pattern = \"animal_[lw]e\")) %>%\n", - " pull(name) %>%\n", - " purrr::map_df(function(x) {\n", + "emof_data <- #var_names %>%\n", + " #filter(str_starts(name, pattern = \"animal_[lw]e\")) %>% #example using regex to parse names\n", + " # pull(name) %>%\n", "\n", - " method <- str_detect(names(ncatt_get( nc, x)),\n", - " paste0(x,'_type'))\n", - " \n", + " # Example using vector of variables\n", + " c(\"animal_length\",\n", + " \"animal_length_2\",\n", + " \"animal_weight\") %>%\n", + " purrr::map_df(function(x) {\n", " list(measurementValue = ncvar_get( nc, x),\n", " measurementType = ncatt_get( nc, x)$long_name,\n", " measurementUnit = ncatt_get( nc, x)$units,\n",