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Update index.md
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Adjusted the "tools" page
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schymane committed Oct 25, 2024
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<h3>Massbank to MetFrag</h3>
<h3>MassBank to MetFrag</h3>

Convert a Massbank record to a MetFrag query file to directly process it with MetFrag.
Convert a MassBank record to a MetFrag query file to directly process it with MetFrag.
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<div class="code">
# java -jar ConvertMassbankToMetFragRecord.jar massbank-input-file metfrag-output-file
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The converter writes information extracted from the Massbank record in the MetFrag query file. This includes among other things the given peak list as well as the precursor mass and if available
the molecular formula and database identifiers of the relating molecule.
The converter writes information extracted from the MassBank record in the MetFrag query file. This includes the given peak list, the precursor mass and if available
the molecular formula and database identifiers of the related molecule.

<h3>SDF to XLS</h3>

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# java -jar ConvertSDFtoXLS.jar sdf-input-file output-folder 1 //with images
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The defined output folder is used to mark the destination for the gernerated XLS output file that will contain the given SDF properties in seperate columns. If the additional third parameter 1 is
The defined output folder is used to mark the destination for the generated XLS output file that will contain the given SDF properties in seperate columns. If the additional third parameter 1 is
given, the converter generates structure images that are displayed in an extra column for each molecule. This option is not recommended if the SDF contains a large number of candidates.
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