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Biology and biochemistry

Components

Teselagen's Open Source Vector Editor Component: <mol:openVectorEditor>

Sequence data is passed between the OpenVectorEditor (OVE) JavaScript plugin and the JSF backing bean as JSON object in the data model described by sequenceData in OVE's editorState documentation. For security reasons, please consider sanitizing incoming and outgoing JSON data, for instance with a JSF converter based on OWASP's JSON Sanitizer.

Teselagen's Open Source Vector/Plasmid Editor Component is licensed under the MIT License.

Supported attributes

  • converter (java.faces.convert.Converter, no default): FacesConverter for the component
  • readonly (boolean, default: false): sets the readOnly flag in the editor state; do not decode the submitted component value if set to true
  • widgetVar (String, no default): client-side variable name of a Promise object that embeds the editor's JavaScript instance

Protein sequence mode

When starting the OVE with no sequence data, the user cannot switch from DNA/RNA sequence mode to protein sequence mode. This can be achieved by using the JSON string OpenVectorEditorCore.EMPTY_PROTEIN_SEQUENCE_JSON as the initial bean property.

Resource configuration (optional)

All resource dependencies (open-vector-editor.min.js and main.css) are included in the jar build pipeline. Note: Font files are not included for license reasons.

Context-params:

  • de.ipb_halle.molecularfaces.OPENVECTOREDITOR_BASE_URL (optional): location of OVE's standalone (UMD) installation relative to the application's context root

Known issues

  • Blueprint, a dependency of OVE, declares global CSS (see OVE issue #604). This will for instance override some CSS declarations of BootsFaces. At the moment the workaround embeds OVE into an <iframe> and a too restrictive content security policy (CSP) may block some of OVE's functionalities.