Return pixels whose value equals nodata value after scaling #279
Workflow file for this run
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| name: Python package build | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| publish_to_pypi: | |
| description: 'Publish wheels and sdist to PyPI' | |
| required: true | |
| default: 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| build: | |
| name: Build ${{ matrix.os }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest', 'windows-latest'] | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: .github/python_test_env.yml | |
| - name: Set development version number | |
| run: | | |
| COMMIT_NUM=$(git rev-list $(git describe --tags --abbrev=0).. --count) | |
| echo "${COMMIT_NUM} commits since last tag" | |
| sed -i.old "s/-dev/-dev${COMMIT_NUM}/" cmake/VersionSource.cmake | |
| - name: Install | |
| run: python -m pip install . -v | |
| - name: Test | |
| run: python -m pytest --cov exactextract --cov-report lcov python/tests | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| files: coverage.lcov | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Build source distribution | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' | |
| run: python -m build . --sdist | |
| - name: Check source distribution | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' | |
| run: python -m twine check dist/*.gz | |
| - name: Upload distribution(s) | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: release-sdist | |
| path: ./dist/*.tar.gz | |
| # Largely taken from https://github.com/shapely/shapely/blob/main/.github/workflows/release.yml | |
| build_wheels: | |
| name: Build ${{ matrix.arch }} wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| if: startsWith(github.event.ref, 'refs/tags') || github.event_name == 'release' || github.event_name == 'workflow_dispatch' | |
| env: | |
| GEOS_VERSION: "3.12.2" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-20.04 | |
| arch: x86_64 | |
| - os: windows-2019 | |
| arch: x86 | |
| msvc_arch: x86 | |
| - os: windows-2019 | |
| arch: AMD64 | |
| msvc_arch: x64 | |
| - os: macos-13 | |
| arch: x86_64 | |
| cmake_osx_architectures: x86_64 | |
| - os: macos-14 | |
| arch: arm64 | |
| cmake_osx_architectures: arm64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| - name: Cache GEOS build | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ runner.temp }}/geos-${{ env.GEOS_VERSION }} | |
| key: ${{ matrix.os }}-${{ matrix.arch }}-${{ env.GEOS_VERSION }}-${{ hashFiles('ci/*') }} | |
| - name: Add GEOS LICENSE | |
| run: | | |
| cp ci/wheels/licenses/LICENSE_GEOS . | |
| shell: bash | |
| - name: Add MSVC LICENSE | |
| run: | | |
| cp ci/wheels/licenses/LICENSE_win32 . | |
| shell: bash | |
| if: ${{ matrix.os == 'windows-2019' }} | |
| - name: Activate MSVC | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| with: | |
| arch: ${{ matrix.msvc_arch }} | |
| if: ${{ matrix.msvc_arch }} | |
| - name: Set development version number | |
| run: | | |
| COMMIT_NUM=$(git rev-list $(git describe --tags --abbrev=0).. --count) | |
| echo "${COMMIT_NUM} commits since last tag" | |
| sed -i.old "s/-dev/-dev${COMMIT_NUM}/" cmake/VersionSource.cmake | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: ${{ matrix.arch }} | |
| CIBW_SKIP: cp36-* cp37-* cp38-* pp* *musllinux* *-manylinux_i686 | |
| CIBW_TEST_SKIP: "cp38-macosx_arm64" | |
| CIBW_ENVIRONMENT_LINUX: | |
| GEOS_VERSION=${{ env.GEOS_VERSION }} | |
| GEOS_INSTALL=/host${{ runner.temp }}/geos-${{ env.GEOS_VERSION }} | |
| GEOS_DIR=/host${{ runner.temp }}/geos-${{ env.GEOS_VERSION }} | |
| GEOS_CONFIG=/host${{ runner.temp }}/geos-${{ env.GEOS_VERSION }}/bin/geos-config | |
| LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/host${{ runner.temp }}/geos-${{ env.GEOS_VERSION }}/lib | |
| CIBW_ENVIRONMENT_MACOS: | |
| GEOS_INSTALL=${{ runner.temp }}/geos-${{ env.GEOS_VERSION }} | |
| GEOS_DIR=${{ runner.temp }}/geos-${{ env.GEOS_VERSION }} | |
| GEOS_CONFIG=${{ runner.temp }}/geos-${{ env.GEOS_VERSION }}/bin/geos-config | |
| MACOSX_DEPLOYMENT_TARGET=10.9 | |
| CMAKE_OSX_ARCHITECTURES='${{ matrix.cmake_osx_architectures }}' | |
| CIBW_ENVIRONMENT_WINDOWS: | |
| GEOS_INSTALL='${{ runner.temp }}\geos-${{ env.GEOS_VERSION }}' | |
| GEOS_DIR='${{ runner.temp }}\geos-${{ env.GEOS_VERSION }}' | |
| GEOS_LIBRARY_PATH='${{ runner.temp }}\geos-${{ env.GEOS_VERSION }}\lib' | |
| GEOS_INCLUDE_PATH='${{ runner.temp }}\geos-${{ env.GEOS_VERSION }}\include' | |
| CIBW_BEFORE_ALL: ./ci/wheels/install_geos.sh | |
| CIBW_BEFORE_ALL_WINDOWS: ci\wheels\install_geos.cmd | |
| CIBW_BEFORE_BUILD_WINDOWS: | |
| pip install delvewheel | |
| CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: delvewheel repair --add-path ${{ runner.temp }}\geos-${{ env.GEOS_VERSION }}\bin -w {dest_dir} {wheel} | |
| CIBW_BUILD_FRONTEND: "pip; args: -vvv" | |
| CIBW_TEST_REQUIRES: pytest numpy | |
| CIBW_TEST_COMMAND: > | |
| python -c "import exactextract; exactextract.__version__" && | |
| python -m pytest {package}/python/tests/test_exact_extract.py {package}/python/tests/test_operation.py {package}/python/tests/test_processor.py -s -v | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: release-${{ matrix.os }}-${{ strategy.job-index }} | |
| path: ./wheelhouse/*.whl | |
| upload_pypi: | |
| name: Publish on PyPI | |
| needs: [build_wheels, build] | |
| if: (github.event_name == 'push' && startsWith(github.ref, 'refs/tags')) || github.event.inputs.publish_to_pypi == 'true' | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| environment: | |
| name: pypi | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: release-* | |
| merge-multiple: true | |
| path: dist | |
| - name: Upload Release Assets to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| skip-existing: true | |
| repository-url: ${{ github.event_name == 'workflow_dispatch' && 'https://test.pypi.org/legacy/' || 'https://upload.pypi.org/legacy/' }} |