Dockerfile.julia

FROM jupyter/scipy-notebook

USER root
RUN apt-get update \
    && apt-get upgrade -y -o Dpkg::Options::="--force-confdef" -o DPkg::Options::="--force-confold" \
    && apt-get install -y \
    man-db \
    libc6 \
    libc6-dev \
    build-essential \
    wget \
    curl \
    file \
    vim \
    screen \
    tmux \
    unzip \
    pkg-config \
    cmake \
    gfortran \
    gettext \
    libreadline-dev \
    libncurses-dev \
    libpcre3-dev \
    libgnutls28 \
    libzmq3-dev \
    libzmq3 \
    python \
    python-yaml \
    python-m2crypto \
    python-crypto \
    msgpack-python \
    python-dev \
    python-setuptools \
    supervisor \
    python-jinja2 \
    python-requests \
    python-isodate \
    python-git \
    python-pip \
    && apt-get clean

RUN pip install --upgrade \
    PyDrive \
    google-api-python-client \
    invoke \
    jsonpointer \
    jsonschema \
    mistune \
    nose \
    pygments \
    pyzmq \
    readline \
    sphinx \
    tornado

RUN pip install 'notebook==4.2'

# Install julia 0.6
RUN mkdir -p /opt/julia-0.6.0-dev && \
    curl -s -L https://status.julialang.org/download/linux-x86_64 | \
    tar -C /opt/julia-0.6.0-dev -x -z --strip-components=1 -f -
RUN ln -fs /opt/julia-0.6.0-dev /opt/julia-0.6

# Make v0.6 default julia
RUN ln -fs /opt/julia-0.6.0-dev /opt/julia

ENV PATH /opt/julia/bin:$PATH

RUN /opt/julia/bin/julia -e 'Pkg.add("IJulia")'
RUN /opt/julia/bin/julia -e 'Pkg.build("IJulia")'

# Install IJulia packages as jovyan and then move the kernelspec out
# to the system share location. Avoids problems with runtime UID change not
# taking effect properly on the .local folder in the jovyan home dir.
RUN mv $HOME/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
    chmod -R go+rx $CONDA_DIR/share/jupyter && \
    rm -rf $HOME/.local
# Update Julia packages
RUN echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" > /home/$NB_USER/.juliarc.jl

USER $NB_USER