This repository contains experiments using the Ontology for Biomedical Investigations (OBI) to model scientific experiments.
This project uses GNU Make and standard Unix tools. If you're on a Unix or Linux system, you probably have all the requirements installed already. If you're on a Mac OS X system, you might be prompted to install XCode. If you're on Windows, then you should use Vagrant to run a virtual machine with a Debian Linux operating system. (Even if you're using Linux or Mac OS X, Vagrant can be a good option.) The Vagrantfile will configure Vagrant for you.
Once Vagrant is installed, these commands will start the virtual machine, log in to it, and switch to the special /vagrant directory which is linked to the project directory on your host operating system:
> vagrant up
> vagrant ssh
$ cd /vagrant
When you're done, log out and either suspend or destroy the virtual machine:
$ exit
> vagrant suspend
> vagrant destroy
Clone this repository and cd into it:
git clone https://github.com/jamesaoverton/obi-experiment.git
cd obi-experiment
To build the whole project (which should be very fast), just run
make
To remove generated files, run
make clean