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meta_data.txt
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meta_data.txt
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#SampleID gene offset tetracycline knock_down replicate Adapter_1 Adapter_2 path_to_treat_template ForwardFastqGZ ReverseFastqGZ
A6_3B_MRB7260_mintet1 A63B 25 FALSE MRB7260 1 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_MRB7260_mintet1_S1_L001_R1_001.fastq.gz A63B_MRB7260_mintet1_S1_L001_R2_001.fastq.gz
A6_3B_MRB7260_mintet2 A63B 25 FALSE MRB7260 2 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_MRB7260_mintet2_S3_L001_R1_001.fastq.gz A63B_MRB7260_mintet2_S3_L001_R2_001.fastq.gz
A6_3B_MRB7260_plustet1 A63B 25 TRUE MRB7260 1 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_MRB7260_plustet1_S2_L001_R1_001.fastq.gz A63B_MRB7260_plustet1_S2_L001_R2_001.fastq.gz
A6_3B_MRB7260_plustet2 A63B 25 TRUE MRB7260 2 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_MRB7260_plustet2_S4_L001_R1_001.fastq.gz A63B_MRB7260_plustet2_S4_L001_R2_001.fastq.gz
A6_3B_REH1_mintet1 A63B 25 FALSE REH1 1 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_REH1_mintet1_S21_L001_R1_001.fastq.gz A63B_REH1_mintet1_S21_L001_R2_001.fastq.gz
A6_3B_REH1_mintet2 A63B 25 FALSE REH1 2 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_REH1_mintet2_S23_L001_R1_001.fastq.gz A63B_REH1_mintet2_S23_L001_R2_001.fastq.gz
A6_3B_REH1_plustet1 A63B 25 TRUE REH1 1 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_REH1_plustet1_S22_L001_R1_001.fastq.gz A63B_REH1_plustet1_S22_L001_R2_001.fastq.gz
A6_3B_REH1_plustet2 A63B 25 TRUE REH1 2 GAAAACACCCATTTTTAGGAGG GGAGTTATAGAATAAGATCAAATAAG /projects/academic/lread/gene-templates/A63B.fasta A63B_REH1_plustet2_S24_L001_R1_001.fastq.gz A63B_REH1_plustet2_S24_L001_R2_001.fastq.gz
COIII_3B_MRB7260_mintet1 COIII_3B 11 FALSE MRB7260 1 GCAGAAACAAAGGGG GGTAGTTTGTAGGAAGTT /projects/academic/lread/gene-templates/COIII_3B.fasta COIII_3B_MRB7260_mintet1_S5_L001_R1_001.fastq.gz COIII_3B_MRB7260_mintet1_S5_L001_R2_001.fastq.gz
COIII_3B_MRB7260_mintet2 COIII_3B 11 FALSE MRB7260 2 GCAGAAACAAAGGGG GGTAGTTTGTAGGAAGTT /projects/academic/lread/gene-templates/COIII_3B.fasta COIII_3B_MRB7260_mintet2_S7_L001_R1_001.fastq.gz COIII_3B_MRB7260_mintet2_S7_L001_R2_001.fastq.gz
COIII_3B_MRB7260_plustet1 COIII_3B 11 TRUE MRB7260 1 GCAGAAACAAAGGGG GGTAGTTTGTAGGAAGTT /projects/academic/lread/gene-templates/COIII_3B.fasta COIII_3B_MRB7260_plustet1_S6_L001_R1_001.fastq.gz COIII_3B_MRB7260_plustet1_S6_L001_R2_001.fastq.gz
COIII_3B_MRB7260_plustet2 COIII_3B 11 TRUE MRB7260 2 GCAGAAACAAAGGGG GGTAGTTTGTAGGAAGTT /projects/academic/lread/gene-templates/COIII_3B.fasta COIII_3B_MRB7260_plustet2_S8_L001_R1_001.fastq.gz COIII_3B_MRB7260_plustet2_S8_L001_R2_001.fastq.gz
CR3_REH1_mintet1 CR3 12 FALSE REH1 1 AGAAATATAAATATGTGTATGATATAT AAGTATGCAAATAATTTTTGT /projects/academic/lread/gene-templates/CR3.fasta CR3_REH1_mintet1_S29_L001_R1_001.fastq.gz CR3_REH1_mintet1_S29_L001_R2_001.fastq.gz
CR3_REH1_mintet2 CR3 12 FALSE REH1 2 AGAAATATAAATATGTGTATGATATAT AAGTATGCAAATAATTTTTGT /projects/academic/lread/gene-templates/CR3.fasta CR3_REH1_mintet2_S31_L001_R1_001.fastq.gz CR3_REH1_mintet2_S31_L001_R2_001.fastq.gz
CR3_REH1_plustet1 CR3 12 TRUE REH1 1 AGAAATATAAATATGTGTATGATATAT AAGTATGCAAATAATTTTTGT /projects/academic/lread/gene-templates/CR3.fasta CR3_REH1_plustet1_S30_L001_R1_001.fastq.gz CR3_REH1_plustet1_S30_L001_R2_001.fastq.gz
CR3_REH1_plustet2 CR3 12 TRUE REH1 2 AGAAATATAAATATGTGTATGATATAT AAGTATGCAAATAATTTTTGT /projects/academic/lread/gene-templates/CR3.fasta CR3_REH1_plustet2_S32_L001_R1_001.fastq.gz CR3_REH1_plustet2_S32_L001_R2_001.fastq.gz
CR4_3B_MRB7260_mintet1 CR4_3B 9 FALSE MRB7260 1 GAGTTTGATTGGGGGGTTTTAGTTGGT TGGTTTTATAAAATGTTTTTTCT /projects/academic/lread/gene-templates/CR4_3B.fasta CR4_3B_MRB7260_mintet1_S9_L001_R1_001.fastq.gz CR4_3B_MRB7260_mintet1_S9_L001_R2_001.fastq.gz
CR4_3B_MRB7260_mintet2 CR4_3B 9 FALSE MRB7260 2 GAGTTTGATTGGGGGGTTTTAGTTGGT TGGTTTTATAAAATGTTTTTTCT /projects/academic/lread/gene-templates/CR4_3B.fasta CR4_3B_MRB7260_mintet2_S11_L001_R1_001.fastq.gz CR4_3B_MRB7260_mintet2_S11_L001_R2_001.fastq.gz
CR4_3B_MRB7260_plustet1 CR4_3B 9 TRUE MRB7260 1 GAGTTTGATTGGGGGGTTTTAGTTGGT TGGTTTTATAAAATGTTTTTTCT /projects/academic/lread/gene-templates/CR4_3B.fasta CR4_3B_MRB7260_plustet1_S10_L001_R1_001.fastq.gz CR4_3B_MRB7260_plustet1_S10_L001_R2_001.fastq.gz
CR4_3B_MRB7260_plustet2 CR4_3B 9 TRUE MRB7260 2 GAGTTTGATTGGGGGGTTTTAGTTGGT TGGTTTTATAAAATGTTTTTTCT /projects/academic/lread/gene-templates/CR4_3B.fasta CR4_3B_MRB7260_plustet2_S12_L001_R1_001.fastq.gz CR4_3B_MRB7260_plustet2_S12_L001_R2_001.fastq.gz
ND8_3B_MRB7260_mintet1 ND8_3B 18 FALSE MRB7260 1 GAGCAGGAGTTTTTCGGGGG CACGGTGAAATTAAATTTTGACTAAAT /projects/academic/lread/gene-templates/ND8_3B.fasta ND8_3B_MRB7260_mintet1_S13_L001_R1_001.fastq.gz ND8_3B_MRB7260_mintet1_S13_L001_R2_001.fastq.gz
ND8_3B_MRB7260_mintet2 ND8_3B 18 FALSE MRB7260 2 GAGCAGGAGTTTTTCGGGGG CACGGTGAAATTAAATTTTGACTAAAT /projects/academic/lread/gene-templates/ND8_3B.fasta ND8_3B_MRB7260_mintet2_S15_L001_R1_001.fastq.gz ND8_3B_MRB7260_mintet2_S15_L001_R2_001.fastq.gz
ND8_3B_MRB7260_plustet1 ND8_3B 18 TRUE MRB7260 1 GAGCAGGAGTTTTTCGGGGG CACGGTGAAATTAAATTTTGACTAAAT /projects/academic/lread/gene-templates/ND8_3B.fasta ND8_3B_MRB7260_plustet1_S14_L001_R1_001.fastq.gz ND8_3B_MRB7260_plustet1_S14_L001_R2_001.fastq.gz
ND8_3B_MRB7260_plustet2 ND8_3B 18 TRUE MRB7260 2 GAGCAGGAGTTTTTCGGGGG CACGGTGAAATTAAATTTTGACTAAAT /projects/academic/lread/gene-templates/ND8_3B.fasta ND8_3B_MRB7260_plustet2_S16_L001_R1_001.fastq.gz ND8_3B_MRB7260_plustet2_S16_L001_R2_001.fastq.gz
ND9_3B_MRB7260_mintet1 ND9_3B 18 FALSE MRB7260 1 TTGGTAGGAGGATGATTGGG CACCGTTGTAATTCTAAATTTC /projects/academic/lread/gene-templates/ND9_3B.fasta ND9_3B_MRB7260_mintet1_S17_L001_R1_001.fastq.gz ND9_3B_MRB7260_mintet1_S17_L001_R2_001.fastq.gz
ND9_3B_MRB7260_mintet2 ND9_3B 18 FALSE MRB7260 2 TTGGTAGGAGGATGATTGGG CACCGTTGTAATTCTAAATTTC /projects/academic/lread/gene-templates/ND9_3B.fasta ND9_3B_MRB7260_mintet2_S19_L001_R1_001.fastq.gz ND9_3B_MRB7260_mintet2_S19_L001_R2_001.fastq.gz
ND9_3B_MRB7260_plustet1 ND9_3B 18 TRUE MRB7260 1 TTGGTAGGAGGATGATTGGG CACCGTTGTAATTCTAAATTTC /projects/academic/lread/gene-templates/ND9_3B.fasta ND9_3B_MRB7260_plustet1_S18_L001_R1_001.fastq.gz ND9_3B_MRB7260_plustet1_S18_L001_R2_001.fastq.gz
ND9_3B_MRB7260_plustet2 ND9_3B 18 TRUE MRB7260 2 TTGGTAGGAGGATGATTGGG CACCGTTGTAATTCTAAATTTC /projects/academic/lread/gene-templates/ND9_3B.fasta ND9_3B_MRB7260_plustet2_S20_L001_R1_001.fastq.gz ND9_3B_MRB7260_plustet2_S20_L001_R2_001.fastq.gz
RPS12_REH1_mintet1 RPS12 10 FALSE REH1 1 CTAATACACTTTTGATAACAAAC AGATATAAGATATGTTTTT /projects/academic/lread/gene-templates/rps12.fasta RPS12_REH1_mintet1_S25_L001_R1_001.fastq.gz RPS12_REH1_mintet1_S25_L001_R2_001.fastq.gz
RPS12_REH1_mintet2 RPS12 10 FALSE REH1 2 CTAATACACTTTTGATAACAAAC AGATATAAGATATGTTTTT /projects/academic/lread/gene-templates/rps12.fasta RPS12_REH1_mintet2_S27_L001_R1_001.fastq.gz RPS12_REH1_mintet2_S27_L001_R2_001.fastq.gz
RPS12_REH1_plustet1 RPS12 10 TRUE REH1 1 CTAATACACTTTTGATAACAAAC AGATATAAGATATGTTTTT /projects/academic/lread/gene-templates/rps12.fasta RPS12_REH1_plustet1_S26_L001_R1_001.fastq.gz RPS12_REH1_plustet1_S26_L001_R2_001.fastq.gz
RPS12_REH1_plustet2 RPS12 10 TRUE REH1 2 CTAATACACTTTTGATAACAAAC AGATATAAGATATGTTTTT /projects/academic/lread/gene-templates/rps12.fasta RPS12_REH1_plustet2_S28_L001_R1_001.fastq.gz RPS12_REH1_plustet2_S28_L001_R2_001.fastq.gz