FunctionCheckingWorkflow_Judith.Rmd

---
title: "To-do list for function checking"
author: "Judith Neve"
date: "04/01/2022"
output: html_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```

# Workflow

1. Extensively check function

2. Modify function as per checks

3. Read through function: is there anything (especially regarding errors/warnings) that should still be changed?

4. Discussion with Rebecca about unclear parts

5. Go through the function check process again

6. Modify documentation


# For each function:

## CTmeta

1. How do we deal with Phi that has too many columns?

Can't include an if statement for the case where it has more columns than q since q is defined from Phi.

## Area

1. Why do Phi = myPhi and Phi = outVAR give different results?

-> Rebecca is looking into this

-> also a problem in Gamma.fromVAR




!!! check that ctfit AND vars work for all functions that can take these as arguments





## PhiPlot

Need to account for when there are multiple solutions for Phi and issue a message