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Classification table

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AlexanderGress edited this page Apr 2, 2019 · 13 revisions

The classification table is the main output file StructMAn produces. It is a tab-separated table file. Each row represents the computed results around one amino acid position of one queried protein. In the following all its columns are explained:

  1. Uniprot-Ac contains the Uniprot accession ID of the query protein.

  2. Uniprot Id contains the Uniprot entry name of the query protein.

  3. Refseq contains the Refseq-protein-ID of the query protein.

  4. AA pos contains the amino acid in one letter code and the number in the protein sequence of the queried position.

  5. Species contains a short species ID, to which the query protein belongs.

  6. Tag contains the tags given by the input file.

  7. Weighted Surface/Core contains the annotation whether the queried position lies on the solvent accessible surface of the protein or in the solvent unaccessible core of the protein based on all mapped structures.

  8. Class contains the structural classification of the queried position.

\tSimple Class\tConfidence Value\tSecondary Structure\tChemical Distance\tBlosum62 Value\tRecommended Structure\tSequence-ID\tCoverage\tResolution\tMax Seq Id Structure\tMax Sequence-ID\tMax Seq Id Coverage\tMax Seq Id Resolution\tAmount of mapped structures

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